data_7RCW # _model_server_result.job_id UlK0hvWbf2DEvzSpbWI-NA _model_server_result.datetime_utc '2024-11-22 04:35:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 7RCW # _exptl.entry_id 7RCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.11 _cell.angle_gamma 90 _cell.entry_id 7RCW _cell.length_a 62.91 _cell.length_b 200.19 _cell.length_c 70.68 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 457 A SER 492 1_555 E C15 ZZ7 . A ZZ7 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD2 ASP 480 A ASP 515 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A OD2 ASP 493 A ASP 528 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc3 A ND1 HIS 503 A HIS 538 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc4 A SG CYS 516 A CYS 551 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 7RCW _atom_sites.fract_transf_matrix[1][1] 0.015896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002834 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 1001 1134 PEG PEG . C 3 ACT A 1 1002 1334 ACT ACT . D 4 GOL A 1 1003 1635 GOL GOL . E 5 ZZ7 A 1 1004 1701 ZZ7 LIG . F 6 ZN A 1 1005 1 ZN ZN . G 7 HOH A 1 1101 133 HOH HOH . G 7 HOH A 2 1102 40 HOH HOH . G 7 HOH A 3 1103 72 HOH HOH . G 7 HOH A 4 1104 206 HOH HOH . G 7 HOH A 5 1105 11 HOH HOH . G 7 HOH A 6 1106 108 HOH HOH . G 7 HOH A 7 1107 45 HOH HOH . G 7 HOH A 8 1108 58 HOH HOH . G 7 HOH A 9 1109 214 HOH HOH . G 7 HOH A 10 1110 98 HOH HOH . G 7 HOH A 11 1111 31 HOH HOH . G 7 HOH A 12 1112 215 HOH HOH . G 7 HOH A 13 1113 216 HOH HOH . G 7 HOH A 14 1114 207 HOH HOH . G 7 HOH A 15 1115 217 HOH HOH . G 7 HOH A 16 1116 202 HOH HOH . G 7 HOH A 17 1117 65 HOH HOH . G 7 HOH A 18 1118 210 HOH HOH . G 7 HOH A 19 1119 19 HOH HOH . G 7 HOH A 20 1120 4 HOH HOH . G 7 HOH A 21 1121 27 HOH HOH . G 7 HOH A 22 1122 208 HOH HOH . G 7 HOH A 23 1123 213 HOH HOH . G 7 HOH A 24 1124 212 HOH HOH . G 7 HOH A 25 1125 203 HOH HOH . G 7 HOH A 26 1126 201 HOH HOH . G 7 HOH A 27 1127 204 HOH HOH . G 7 HOH A 28 1128 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 72.078 75.897 39.653 1 41.37 ? C1 GOL 1003 A 1 HETATM 2 O O1 GOL . . . D 4 73.277 75.293 39.142 1 38.65 ? O1 GOL 1003 A 1 HETATM 3 C C2 GOL . . . D 4 71.964 75.804 41.19 1 45.49 ? C2 GOL 1003 A 1 HETATM 4 O O2 GOL . . . D 4 73.257 75.918 41.847 1 41.06 ? O2 GOL 1003 A 1 HETATM 5 C C3 GOL . . . D 4 70.966 76.796 41.83 1 42.78 ? C3 GOL 1003 A 1 HETATM 6 O O3 GOL . . . D 4 69.709 76.951 41.148 1 41.23 ? O3 GOL 1003 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 607 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #