data_7RCW # _model_server_result.job_id BgWFMUHNai0FfYPbD81frg _model_server_result.datetime_utc '2024-11-22 04:10:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 7RCW # _exptl.entry_id 7RCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.42 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.11 _cell.angle_gamma 90 _cell.entry_id 7RCW _cell.length_a 62.91 _cell.length_b 200.19 _cell.length_c 70.68 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 457 A SER 492 1_555 E C15 ZZ7 . A ZZ7 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD2 ASP 480 A ASP 515 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 A OD2 ASP 493 A ASP 528 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc3 A ND1 HIS 503 A HIS 538 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.702 ? metalc ? metalc4 A SG CYS 516 A CYS 551 1_555 F ZN ZN . A ZN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C16 H21 N3 O5 S' _chem_comp.formula_weight 367.42 _chem_comp.id ZZ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 ZZ7 doub 411 n n C2 O2 ZZ7 sing 412 n n C2 C12 ZZ7 sing 413 n n C12 C6 ZZ7 sing 414 n n C12 N3 ZZ7 sing 415 n n C6 C1 ZZ7 sing 416 n n C6 C16 ZZ7 sing 417 n n C6 S1 ZZ7 sing 418 n n S1 C13 ZZ7 sing 419 n n N3 C13 ZZ7 sing 420 n n C13 C14 ZZ7 sing 421 n n C14 C15 ZZ7 sing 422 n n C14 N1 ZZ7 sing 423 n n C15 O4 ZZ7 doub 424 n n C15 OXT ZZ7 sing 425 n n N1 C3 ZZ7 sing 426 n n C3 O3 ZZ7 doub 427 n n C3 C4 ZZ7 sing 428 n n C4 N2 ZZ7 sing 429 n n C4 C5 ZZ7 sing 430 n n C5 C7 ZZ7 sing 431 n y C5 C11 ZZ7 doub 432 n y C7 C8 ZZ7 doub 433 n y C8 C9 ZZ7 sing 434 n y C9 C10 ZZ7 doub 435 n y C10 C11 ZZ7 sing 436 n y O2 H2 ZZ7 sing 437 n n C12 H12 ZZ7 sing 438 n n N3 H3 ZZ7 sing 439 n n C1 H11C ZZ7 sing 440 n n C1 H12C ZZ7 sing 441 n n C1 H13C ZZ7 sing 442 n n C16 H161 ZZ7 sing 443 n n C16 H162 ZZ7 sing 444 n n C16 H163 ZZ7 sing 445 n n C13 H13 ZZ7 sing 446 n n C14 H14 ZZ7 sing 447 n n N1 H1 ZZ7 sing 448 n n OXT HXT ZZ7 sing 449 n n C4 H4 ZZ7 sing 450 n n N2 H21N ZZ7 sing 451 n n N2 H22N ZZ7 sing 452 n n C7 H7 ZZ7 sing 453 n n C11 H11 ZZ7 sing 454 n n C8 H8 ZZ7 sing 455 n n C9 H9 ZZ7 sing 456 n n C10 H10 ZZ7 sing 457 n n # _atom_sites.entry_id 7RCW _atom_sites.fract_transf_matrix[1][1] 0.015896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002834 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 1001 1134 PEG PEG . C 3 ACT A 1 1002 1334 ACT ACT . D 4 GOL A 1 1003 1635 GOL GOL . E 5 ZZ7 A 1 1004 1701 ZZ7 LIG . F 6 ZN A 1 1005 1 ZN ZN . G 7 HOH A 1 1101 133 HOH HOH . G 7 HOH A 2 1102 40 HOH HOH . G 7 HOH A 3 1103 72 HOH HOH . G 7 HOH A 4 1104 206 HOH HOH . G 7 HOH A 5 1105 11 HOH HOH . G 7 HOH A 6 1106 108 HOH HOH . G 7 HOH A 7 1107 45 HOH HOH . G 7 HOH A 8 1108 58 HOH HOH . G 7 HOH A 9 1109 214 HOH HOH . G 7 HOH A 10 1110 98 HOH HOH . G 7 HOH A 11 1111 31 HOH HOH . G 7 HOH A 12 1112 215 HOH HOH . G 7 HOH A 13 1113 216 HOH HOH . G 7 HOH A 14 1114 207 HOH HOH . G 7 HOH A 15 1115 217 HOH HOH . G 7 HOH A 16 1116 202 HOH HOH . G 7 HOH A 17 1117 65 HOH HOH . G 7 HOH A 18 1118 210 HOH HOH . G 7 HOH A 19 1119 19 HOH HOH . G 7 HOH A 20 1120 4 HOH HOH . G 7 HOH A 21 1121 27 HOH HOH . G 7 HOH A 22 1122 208 HOH HOH . G 7 HOH A 23 1123 213 HOH HOH . G 7 HOH A 24 1124 212 HOH HOH . G 7 HOH A 25 1125 203 HOH HOH . G 7 HOH A 26 1126 201 HOH HOH . G 7 HOH A 27 1127 204 HOH HOH . G 7 HOH A 28 1128 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 ZZ7 . . . E 5 42.653 113.234 50.284 1 72.92 -1 O1 ZZ7 1004 A 1 HETATM 2 C C2 ZZ7 . . . E 5 41.578 112.555 50.184 1 74.89 ? C2 ZZ7 1004 A 1 HETATM 3 O O2 ZZ7 . . . E 5 41.216 111.592 50.869 1 73.93 ? O2 ZZ7 1004 A 1 HETATM 4 C C12 ZZ7 . . . E 5 40.563 113.031 48.946 1 65.54 ? C12 ZZ7 1004 A 1 HETATM 5 C C6 ZZ7 . . . E 5 39.186 113.511 49.486 1 56.43 ? C6 ZZ7 1004 A 1 HETATM 6 C C1 ZZ7 . . . E 5 38.252 112.411 49.917 1 55.09 ? C1 ZZ7 1004 A 1 HETATM 7 C C16 ZZ7 . . . E 5 39.275 114.664 50.479 1 50.29 ? C16 ZZ7 1004 A 1 HETATM 8 S S1 ZZ7 . . . E 5 38.484 114.304 47.915 1 65.75 ? S1 ZZ7 1004 A 1 HETATM 9 N N3 ZZ7 . . . E 5 41.066 114.207 48.121 1 61.65 ? N3 ZZ7 1004 A 1 HETATM 10 C C13 ZZ7 . . . E 5 40.09 114.78 47.229 1 57.34 ? C13 ZZ7 1004 A 1 HETATM 11 C C14 ZZ7 . . . E 5 40.034 114.338 45.745 1 57.63 ? C14 ZZ7 1004 A 1 HETATM 12 C C15 ZZ7 . . . E 5 41.392 113.885 45.268 1 57.79 ? C15 ZZ7 1004 A 1 HETATM 13 O O4 ZZ7 . . . E 5 41.591 112.721 45.034 1 58.85 ? O4 ZZ7 1004 A 1 HETATM 14 N N1 ZZ7 . . . E 5 39.151 113.195 45.39 1 58.24 ? N1 ZZ7 1004 A 1 HETATM 15 C C3 ZZ7 . . . E 5 38.133 113.33 44.495 1 64.73 ? C3 ZZ7 1004 A 1 HETATM 16 O O3 ZZ7 . . . E 5 38.006 114.477 44.056 1 66.34 ? O3 ZZ7 1004 A 1 HETATM 17 C C4 ZZ7 . . . E 5 37.097 112.156 43.898 1 66.26 ? C4 ZZ7 1004 A 1 HETATM 18 N N2 ZZ7 . . . E 5 36.051 112.768 43.023 1 69.51 ? N2 ZZ7 1004 A 1 HETATM 19 C C5 ZZ7 . . . E 5 36.521 111.283 44.954 1 67.48 ? C5 ZZ7 1004 A 1 HETATM 20 C C7 ZZ7 . . . E 5 36.482 109.862 44.781 1 73.98 ? C7 ZZ7 1004 A 1 HETATM 21 C C8 ZZ7 . . . E 5 35.956 108.978 45.798 1 73.53 ? C8 ZZ7 1004 A 1 HETATM 22 C C9 ZZ7 . . . E 5 35.46 109.511 47.012 1 64.01 ? C9 ZZ7 1004 A 1 HETATM 23 C C10 ZZ7 . . . E 5 35.475 110.919 47.178 1 66.07 ? C10 ZZ7 1004 A 1 HETATM 24 C C11 ZZ7 . . . E 5 36.009 111.787 46.172 1 64.38 ? C11 ZZ7 1004 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #