data_7RD0 # _model_server_result.job_id R64tukRsQ6aYv42pXIY6cA _model_server_result.datetime_utc '2024-10-11 05:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7RD0 # _exptl.entry_id 7RD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RD0 _cell.length_a 85.02 _cell.length_b 114.22 _cell.length_c 154.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 282 A CYS 323 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A SG CYS 297 A CYS 338 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A ND1 HIS 303 A HIS 344 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc4 A SG CYS 316 A CYS 357 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7RD0 _atom_sites.fract_transf_matrix[1][1] 0.011762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 742 GOL GOL . C 2 GOL A 1 602 842 GOL GOL . D 2 GOL A 1 603 942 GOL GOL . E 2 GOL A 1 604 1042 GOL GOL . F 3 ZN A 1 605 1 ZN ZN . G 4 HOH A 1 701 4 HOH HOH . G 4 HOH A 2 702 49 HOH HOH . G 4 HOH A 3 703 42 HOH HOH . G 4 HOH A 4 704 2 HOH HOH . G 4 HOH A 5 705 48 HOH HOH . G 4 HOH A 6 706 1 HOH HOH . G 4 HOH A 7 707 6 HOH HOH . G 4 HOH A 8 708 30 HOH HOH . G 4 HOH A 9 709 11 HOH HOH . G 4 HOH A 10 710 22 HOH HOH . G 4 HOH A 11 711 47 HOH HOH . G 4 HOH A 12 712 19 HOH HOH . G 4 HOH A 13 713 26 HOH HOH . G 4 HOH A 14 714 38 HOH HOH . G 4 HOH A 15 715 52 HOH HOH . G 4 HOH A 16 716 5 HOH HOH . G 4 HOH A 17 717 33 HOH HOH . G 4 HOH A 18 718 21 HOH HOH . G 4 HOH A 19 719 12 HOH HOH . G 4 HOH A 20 720 36 HOH HOH . G 4 HOH A 21 721 16 HOH HOH . G 4 HOH A 22 722 45 HOH HOH . G 4 HOH A 23 723 50 HOH HOH . G 4 HOH A 24 724 37 HOH HOH . G 4 HOH A 25 725 59 HOH HOH . G 4 HOH A 26 726 41 HOH HOH . G 4 HOH A 27 727 7 HOH HOH . G 4 HOH A 28 728 3 HOH HOH . G 4 HOH A 29 729 18 HOH HOH . G 4 HOH A 30 730 34 HOH HOH . G 4 HOH A 31 731 32 HOH HOH . G 4 HOH A 32 732 8 HOH HOH . G 4 HOH A 33 733 55 HOH HOH . G 4 HOH A 34 734 14 HOH HOH . G 4 HOH A 35 735 9 HOH HOH . G 4 HOH A 36 736 15 HOH HOH . G 4 HOH A 37 737 25 HOH HOH . G 4 HOH A 38 738 10 HOH HOH . G 4 HOH A 39 739 35 HOH HOH . G 4 HOH A 40 740 24 HOH HOH . G 4 HOH A 41 741 51 HOH HOH . G 4 HOH A 42 742 57 HOH HOH . G 4 HOH A 43 743 23 HOH HOH . G 4 HOH A 44 744 39 HOH HOH . G 4 HOH A 45 745 29 HOH HOH . G 4 HOH A 46 746 27 HOH HOH . G 4 HOH A 47 747 46 HOH HOH . G 4 HOH A 48 748 31 HOH HOH . G 4 HOH A 49 749 58 HOH HOH . G 4 HOH A 50 750 28 HOH HOH . G 4 HOH A 51 751 43 HOH HOH . G 4 HOH A 52 752 44 HOH HOH . G 4 HOH A 53 753 20 HOH HOH . G 4 HOH A 54 754 40 HOH HOH . G 4 HOH A 55 755 54 HOH HOH . G 4 HOH A 56 756 56 HOH HOH . G 4 HOH A 57 757 53 HOH HOH . G 4 HOH A 58 758 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 3.357 -50.891 -5.809 1 107.63 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . D 2 3.281 -49.479 -5.983 1 89.73 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . D 2 3.62 -51.279 -4.372 1 99.99 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . D 2 2.476 -51.932 -3.83 1 92.36 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . D 2 4.85 -52.141 -4.2 1 102.28 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . D 2 4.768 -52.963 -3.04 1 96.8 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #