data_7RD2 # _model_server_result.job_id ZD4t4K_-LQwTd0dI3PkXTA _model_server_result.datetime_utc '2024-11-24 00:48:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":905}' # _entry.id 7RD2 # _exptl.entry_id 7RD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RD2 _cell.length_a 134.563 _cell.length_b 178.393 _cell.length_c 179.677 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,S 1 1 B,C,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? covale ? covale1 B ND2 ASN 47 B ASN 45 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 409 n n S O2 SO4 doub 410 n n S O3 SO4 sing 411 n n S O4 SO4 sing 412 n n # _atom_sites.entry_id 7RD2 _atom_sites.fract_transf_matrix[1][1] 0.007431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 5X7 A 1 901 901 5X7 LIG . E 4 SO4 A 1 902 1 SO4 SO4 . F 4 SO4 A 1 903 2 SO4 SO4 . G 4 SO4 A 1 904 3 SO4 SO4 . H 4 SO4 A 1 905 4 SO4 SO4 . I 4 SO4 A 1 906 5 SO4 SO4 . J 4 SO4 A 1 907 6 SO4 SO4 . K 4 SO4 A 1 908 7 SO4 SO4 . L 4 SO4 A 1 909 8 SO4 SO4 . M 3 5X7 B 1 901 901 5X7 LIG . N 5 GOL B 1 902 1001 GOL GOL . O 4 SO4 B 1 903 9 SO4 SO4 . P 4 SO4 B 1 904 10 SO4 SO4 . Q 4 SO4 B 1 905 11 SO4 SO4 . R 4 SO4 B 1 906 12 SO4 SO4 . S 6 HOH A 1 1001 18 HOH HOH . S 6 HOH A 2 1002 21 HOH HOH . S 6 HOH A 3 1003 2 HOH HOH . S 6 HOH A 4 1004 25 HOH HOH . S 6 HOH A 5 1005 1 HOH HOH . S 6 HOH A 6 1006 157 HOH HOH . S 6 HOH A 7 1007 6 HOH HOH . S 6 HOH A 8 1008 23 HOH HOH . S 6 HOH A 9 1009 22 HOH HOH . S 6 HOH A 10 1010 16 HOH HOH . S 6 HOH A 11 1011 142 HOH HOH . S 6 HOH A 12 1012 80 HOH HOH . S 6 HOH A 13 1013 19 HOH HOH . S 6 HOH A 14 1014 110 HOH HOH . S 6 HOH A 15 1015 5 HOH HOH . S 6 HOH A 16 1016 11 HOH HOH . T 6 HOH B 1 1001 7 HOH HOH . T 6 HOH B 2 1002 9 HOH HOH . T 6 HOH B 3 1003 4 HOH HOH . T 6 HOH B 4 1004 12 HOH HOH . T 6 HOH B 5 1005 78 HOH HOH . T 6 HOH B 6 1006 26 HOH HOH . T 6 HOH B 7 1007 24 HOH HOH . T 6 HOH B 8 1008 10 HOH HOH . T 6 HOH B 9 1009 8 HOH HOH . T 6 HOH B 10 1010 28 HOH HOH . T 6 HOH B 11 1011 14 HOH HOH . T 6 HOH B 12 1012 17 HOH HOH . T 6 HOH B 13 1013 3 HOH HOH . T 6 HOH B 14 1014 13 HOH HOH . T 6 HOH B 15 1015 25 HOH HOH . T 6 HOH B 16 1016 29 HOH HOH . T 6 HOH B 17 1017 20 HOH HOH . T 6 HOH B 18 1018 23 HOH HOH . T 6 HOH B 19 1019 15 HOH HOH . T 6 HOH B 20 1020 201 HOH HOH . T 6 HOH B 21 1021 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . Q 4 15.603 -33.67 -17.227 1 79.57 ? S SO4 905 B 1 HETATM 2 O O1 SO4 . . . Q 4 16.7 -34.431 -17.758 1 92.38 ? O1 SO4 905 B 1 HETATM 3 O O2 SO4 . . . Q 4 14.525 -33.73 -18.186 1 72.04 ? O2 SO4 905 B 1 HETATM 4 O O3 SO4 . . . Q 4 15.221 -34.236 -15.933 1 68.14 ? O3 SO4 905 B 1 HETATM 5 O O4 SO4 . . . Q 4 15.996 -32.29 -17.053 1 83.72 ? O4 SO4 905 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #