data_7RDG
#
_model_server_result.job_id            cmibzXEIOHiGeXOwohDprQ 
_model_server_result.datetime_utc      '2024-10-24 04:28:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rdg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    7RDG 
#
_exptl.entry_id    7RDG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.08 
_cell.angle_gamma         90 
_cell.entry_id            7RDG 
_cell.length_a            30.33 
_cell.length_b            112.28 
_cell.length_c            77.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RDG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,L 1 1 
D,H,O 1 2 
B,C,F,G,J,K,M,N 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 1.452084 56.14 -77.026314 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   GAL 
_pdbx_entity_branch_link.comp_id_2                   GLC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n E GLC 1 E 1 GLC A 201 LBT 
2 n E GAL 2 E 2 GAL A 201 LBT 
2 n F GLC 1 F 1 GLC B 201 LBT 
2 n F GAL 2 F 2 GAL B 201 LBT 
2 n G GLC 1 G 1 GLC C 201 LBT 
2 n G GAL 2 G 2 GAL C 201 LBT 
2 n H GLC 1 H 1 GLC D 201 LBT 
2 n H GAL 2 H 2 GAL D 201 LBT 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E O4 GLC . E GLC 1 1_555 E C1 GAL . E GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale2 F O4 GLC . F GLC 1 1_555 F C1 GAL . F GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? 
covale ? covale3 G O4 GLC . G GLC 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? 
covale ? covale4 H O4 GLC . H GLC 1 1_555 H C1 GAL . H GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7RDG 
_atom_sites.fract_transf_matrix[1][1]    0.032971 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000624 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 EDO C 1 201 202 EDO EDO . 
J 3 EDO A 1 201 202 EDO EDO . 
K 3 EDO A 1 202 203 EDO EDO . 
L 4 HOH C 1 301 105 HOH HOH . 
L 4 HOH C 2 302 73 HOH HOH . 
L 4 HOH C 3 303 65 HOH HOH . 
L 4 HOH C 4 304 64 HOH HOH . 
L 4 HOH C 5 305 7 HOH HOH . 
L 4 HOH C 6 306 61 HOH HOH . 
L 4 HOH C 7 307 86 HOH HOH . 
L 4 HOH C 8 308 50 HOH HOH . 
L 4 HOH C 9 309 14 HOH HOH . 
L 4 HOH C 10 310 3 HOH HOH . 
L 4 HOH C 11 311 123 HOH HOH . 
L 4 HOH C 12 312 12 HOH HOH . 
L 4 HOH C 13 313 80 HOH HOH . 
L 4 HOH C 14 314 52 HOH HOH . 
L 4 HOH C 15 315 62 HOH HOH . 
L 4 HOH C 16 316 100 HOH HOH . 
L 4 HOH C 17 317 44 HOH HOH . 
L 4 HOH C 18 318 51 HOH HOH . 
L 4 HOH C 19 319 108 HOH HOH . 
L 4 HOH C 20 320 106 HOH HOH . 
L 4 HOH C 21 321 111 HOH HOH . 
L 4 HOH C 22 322 96 HOH HOH . 
M 4 HOH B 1 201 87 HOH HOH . 
M 4 HOH B 2 202 20 HOH HOH . 
M 4 HOH B 3 203 72 HOH HOH . 
M 4 HOH B 4 204 18 HOH HOH . 
M 4 HOH B 5 205 98 HOH HOH . 
M 4 HOH B 6 206 21 HOH HOH . 
M 4 HOH B 7 207 6 HOH HOH . 
M 4 HOH B 8 208 9 HOH HOH . 
M 4 HOH B 9 209 27 HOH HOH . 
M 4 HOH B 10 210 122 HOH HOH . 
M 4 HOH B 11 211 112 HOH HOH . 
M 4 HOH B 12 212 97 HOH HOH . 
M 4 HOH B 13 213 103 HOH HOH . 
M 4 HOH B 14 214 79 HOH HOH . 
M 4 HOH B 15 215 88 HOH HOH . 
M 4 HOH B 16 216 29 HOH HOH . 
M 4 HOH B 17 217 54 HOH HOH . 
M 4 HOH B 18 218 36 HOH HOH . 
M 4 HOH B 19 219 118 HOH HOH . 
M 4 HOH B 20 220 48 HOH HOH . 
M 4 HOH B 21 221 38 HOH HOH . 
M 4 HOH B 22 222 107 HOH HOH . 
M 4 HOH B 23 223 47 HOH HOH . 
M 4 HOH B 24 224 92 HOH HOH . 
M 4 HOH B 25 225 53 HOH HOH . 
N 4 HOH A 1 301 120 HOH HOH . 
N 4 HOH A 2 302 76 HOH HOH . 
N 4 HOH A 3 303 31 HOH HOH . 
N 4 HOH A 4 304 78 HOH HOH . 
N 4 HOH A 5 305 81 HOH HOH . 
N 4 HOH A 6 306 91 HOH HOH . 
N 4 HOH A 7 307 68 HOH HOH . 
N 4 HOH A 8 308 10 HOH HOH . 
N 4 HOH A 9 309 60 HOH HOH . 
N 4 HOH A 10 310 83 HOH HOH . 
N 4 HOH A 11 311 46 HOH HOH . 
N 4 HOH A 12 312 94 HOH HOH . 
N 4 HOH A 13 313 56 HOH HOH . 
N 4 HOH A 14 314 89 HOH HOH . 
N 4 HOH A 15 315 82 HOH HOH . 
N 4 HOH A 16 316 119 HOH HOH . 
N 4 HOH A 17 317 57 HOH HOH . 
N 4 HOH A 18 318 11 HOH HOH . 
N 4 HOH A 19 319 93 HOH HOH . 
N 4 HOH A 20 320 28 HOH HOH . 
N 4 HOH A 21 321 102 HOH HOH . 
N 4 HOH A 22 322 42 HOH HOH . 
N 4 HOH A 23 323 39 HOH HOH . 
N 4 HOH A 24 324 40 HOH HOH . 
N 4 HOH A 25 325 85 HOH HOH . 
O 4 HOH D 1 201 74 HOH HOH . 
O 4 HOH D 2 202 110 HOH HOH . 
O 4 HOH D 3 203 90 HOH HOH . 
O 4 HOH D 4 204 121 HOH HOH . 
O 4 HOH D 5 205 75 HOH HOH . 
O 4 HOH D 6 206 104 HOH HOH . 
O 4 HOH D 7 207 95 HOH HOH . 
O 4 HOH D 8 208 15 HOH HOH . 
O 4 HOH D 9 209 16 HOH HOH . 
O 4 HOH D 10 210 17 HOH HOH . 
O 4 HOH D 11 211 109 HOH HOH . 
O 4 HOH D 12 212 37 HOH HOH . 
O 4 HOH D 13 213 71 HOH HOH . 
O 4 HOH D 14 214 101 HOH HOH . 
O 4 HOH D 15 215 77 HOH HOH . 
O 4 HOH D 16 216 45 HOH HOH . 
O 4 HOH D 17 217 99 HOH HOH . 
O 4 HOH D 18 218 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 3 7.977 7.369 -45.406 1 62.37 ? C1 EDO 201 C 1 
HETATM 2 O O1 EDO . . . I 3 9.045 8.268 -45.844 1 62.37 ? O1 EDO 201 C 1 
HETATM 3 C C2 EDO . . . I 3 8.443 6.529 -44.196 1 62.37 ? C2 EDO 201 C 1 
HETATM 4 O O2 EDO . . . I 3 8.852 7.29 -43.041 1 62.37 ? O2 EDO 201 C 1 
HETATM 5 H H11 EDO . . . I 3 7.721 6.783 -46.135 1 57.7 ? H11 EDO 201 C 1 
HETATM 6 H H12 EDO . . . I 3 7.191 7.884 -45.166 1 57.7 ? H12 EDO 201 C 1 
HETATM 7 H HO1 EDO . . . I 3 8.781 8.718 -46.502 1 57.7 ? HO1 EDO 201 C 1 
HETATM 8 H H21 EDO . . . I 3 9.184 5.969 -44.475 1 57.7 ? H21 EDO 201 C 1 
HETATM 9 H H22 EDO . . . I 3 7.721 5.935 -43.935 1 57.7 ? H22 EDO 201 C 1 
HETATM 10 H HO2 EDO . . . I 3 9.089 6.765 -42.429 1 57.7 ? HO2 EDO 201 C 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#