data_7REB # _model_server_result.job_id lmQRa6elAJl2Zj8HvaibKw _model_server_result.datetime_utc '2024-11-17 23:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7reb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 7REB # _exptl.entry_id 7REB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3R)-3-{7-[4-(aminomethyl)phenyl]-2H-1,3-benzodioxol-5-yl}but-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7REB _cell.length_a 66.487 _cell.length_b 66.487 _cell.length_c 213.194 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7REB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 35.532333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H25 N5 O2' _chem_comp.formula_weight 415.488 _chem_comp.id 560 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3R)-3-{7-[4-(aminomethyl)phenyl]-2H-1,3-benzodioxol-5-yl}but-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAE C6 560 sing 1 n n CAJ CAI 560 sing 2 n n C6 N1 560 doub 3 n y C6 C5 560 sing 4 n y N1 C2 560 sing 5 n y CAI CAH 560 sing 6 n n CAI CAK 560 sing 7 n n CAH CAG 560 trip 8 n n CAG C5 560 sing 9 n n C5 C4 560 doub 10 n y C2 NAA 560 sing 11 n n C2 N3 560 doub 12 n y CAK CAL 560 doub 13 n y CAK CBA 560 sing 14 n y CAL CAM 560 sing 15 n y CBA CAZ 560 doub 16 n y C4 N3 560 sing 17 n y C4 CBC 560 sing 18 n n CAU CAT 560 doub 19 n y CAU CAN 560 sing 20 n y CAM CAN 560 sing 21 n n CAM CAV 560 doub 22 n y CAZ CAV 560 sing 23 n y CAZ OAY 560 sing 24 n n NAS CAR 560 sing 25 n n CAT CAQ 560 sing 26 n y CAN CAO 560 doub 27 n y CAV OAW 560 sing 28 n n OAY CAX 560 sing 29 n n CBC CBD 560 sing 30 n n CAQ CAR 560 sing 31 n n CAQ CAP 560 doub 32 n y CAO CAP 560 sing 33 n y OAW CAX 560 sing 34 n n CAI H1 560 sing 35 n n CAJ H2 560 sing 36 n n CAJ H3 560 sing 37 n n CAJ H4 560 sing 38 n n CAL H5 560 sing 39 n n CAO H6 560 sing 40 n n CAP H7 560 sing 41 n n CAR H8 560 sing 42 n n CAR H9 560 sing 43 n n CAT H10 560 sing 44 n n CAU H11 560 sing 45 n n CAX H12 560 sing 46 n n CAX H13 560 sing 47 n n CBA H14 560 sing 48 n n CBC H15 560 sing 49 n n CBC H16 560 sing 50 n n CBD H17 560 sing 51 n n CBD H18 560 sing 52 n n CBD H19 560 sing 53 n n NAA H20 560 sing 54 n n NAA H21 560 sing 55 n n NAE H22 560 sing 56 n n NAE H23 560 sing 57 n n NAS H24 560 sing 58 n n NAS H25 560 sing 59 n n # _atom_sites.entry_id 7REB _atom_sites.fract_transf_matrix[1][1] 0.015041 _atom_sites.fract_transf_matrix[1][2] 0.008684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 3 SO4 SO4 . E 2 SO4 A 1 204 4 SO4 SO4 . F 2 SO4 A 1 205 5 SO4 SO4 . G 2 SO4 A 1 206 6 SO4 SO4 . H 2 SO4 A 1 207 7 SO4 SO4 . I 3 560 A 1 208 1 560 DRG . J 4 HOH A 1 301 53 HOH HOH . J 4 HOH A 2 302 36 HOH HOH . J 4 HOH A 3 303 35 HOH HOH . J 4 HOH A 4 304 31 HOH HOH . J 4 HOH A 5 305 52 HOH HOH . J 4 HOH A 6 306 13 HOH HOH . J 4 HOH A 7 307 12 HOH HOH . J 4 HOH A 8 308 16 HOH HOH . J 4 HOH A 9 309 11 HOH HOH . J 4 HOH A 10 310 15 HOH HOH . J 4 HOH A 11 311 9 HOH HOH . J 4 HOH A 12 312 30 HOH HOH . J 4 HOH A 13 313 32 HOH HOH . J 4 HOH A 14 314 40 HOH HOH . J 4 HOH A 15 315 22 HOH HOH . J 4 HOH A 16 316 44 HOH HOH . J 4 HOH A 17 317 14 HOH HOH . J 4 HOH A 18 318 41 HOH HOH . J 4 HOH A 19 319 1 HOH HOH . J 4 HOH A 20 320 39 HOH HOH . J 4 HOH A 21 321 4 HOH HOH . J 4 HOH A 22 322 5 HOH HOH . J 4 HOH A 23 323 7 HOH HOH . J 4 HOH A 24 324 8 HOH HOH . J 4 HOH A 25 325 51 HOH HOH . J 4 HOH A 26 326 29 HOH HOH . J 4 HOH A 27 327 20 HOH HOH . J 4 HOH A 28 328 47 HOH HOH . J 4 HOH A 29 329 26 HOH HOH . J 4 HOH A 30 330 21 HOH HOH . J 4 HOH A 31 331 24 HOH HOH . J 4 HOH A 32 332 28 HOH HOH . J 4 HOH A 33 333 23 HOH HOH . J 4 HOH A 34 334 3 HOH HOH . J 4 HOH A 35 335 2 HOH HOH . J 4 HOH A 36 336 42 HOH HOH . J 4 HOH A 37 337 18 HOH HOH . J 4 HOH A 38 338 17 HOH HOH . J 4 HOH A 39 339 38 HOH HOH . J 4 HOH A 40 340 37 HOH HOH . J 4 HOH A 41 341 48 HOH HOH . J 4 HOH A 42 342 43 HOH HOH . J 4 HOH A 43 343 27 HOH HOH . J 4 HOH A 44 344 50 HOH HOH . J 4 HOH A 45 345 33 HOH HOH . J 4 HOH A 46 346 46 HOH HOH . J 4 HOH A 47 347 34 HOH HOH . J 4 HOH A 48 348 25 HOH HOH . J 4 HOH A 49 349 6 HOH HOH . J 4 HOH A 50 350 49 HOH HOH . J 4 HOH A 51 351 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 560 . . . I 3 -16.45 -24.935 7.712 1 108.5 ? C4 560 208 A 1 HETATM 2 C C5 560 . . . I 3 -16.302 -24.704 6.361 1 110.35 ? C5 560 208 A 1 HETATM 3 C C6 560 . . . I 3 -17.32 -24.062 5.69 1 111.23 ? C6 560 208 A 1 HETATM 4 N N1 560 . . . I 3 -18.413 -23.674 6.334 1 100.87 ? N1 560 208 A 1 HETATM 5 N N3 560 . . . I 3 -17.563 -24.526 8.314 1 109.38 ? N3 560 208 A 1 HETATM 6 C C2 560 . . . I 3 -18.53 -23.907 7.64 1 111.93 ? C2 560 208 A 1 HETATM 7 C CAG 560 . . . I 3 -15.151 -25.115 5.701 1 106.78 ? CAG 560 208 A 1 HETATM 8 C CAH 560 . . . I 3 -14.208 -25.452 5.149 1 114.73 ? CAH 560 208 A 1 HETATM 9 C CAI 560 . . . I 3 -13.031 -25.862 4.395 1 115.43 ? CAI 560 208 A 1 HETATM 10 C CAJ 560 . . . I 3 -13.473 -26.737 3.235 1 108.37 ? CAJ 560 208 A 1 HETATM 11 C CAK 560 . . . I 3 -12.155 -26.629 5.138 1 119.34 ? CAK 560 208 A 1 HETATM 12 C CAL 560 . . . I 3 -12.541 -27.853 5.641 1 116.15 ? CAL 560 208 A 1 HETATM 13 C CAM 560 . . . I 3 -11.611 -28.586 6.368 1 117.76 ? CAM 560 208 A 1 HETATM 14 C CAN 560 . . . I 3 -12.055 -29.813 6.847 1 114.47 ? CAN 560 208 A 1 HETATM 15 C CAO 560 . . . I 3 -13.367 -30.185 6.614 1 111.59 ? CAO 560 208 A 1 HETATM 16 C CAP 560 . . . I 3 -13.827 -31.412 7.068 1 111.01 ? CAP 560 208 A 1 HETATM 17 C CAQ 560 . . . I 3 -12.97 -32.267 7.748 1 116.47 ? CAQ 560 208 A 1 HETATM 18 C CAR 560 . . . I 3 -13.404 -33.498 8.205 1 115.83 ? CAR 560 208 A 1 HETATM 19 C CAT 560 . . . I 3 -11.659 -31.903 7.976 1 116.9 ? CAT 560 208 A 1 HETATM 20 C CAU 560 . . . I 3 -11.213 -30.683 7.516 1 117.22 ? CAU 560 208 A 1 HETATM 21 C CAV 560 . . . I 3 -10.347 -28.136 6.558 1 122.05 ? CAV 560 208 A 1 HETATM 22 C CAX 560 . . . I 3 -8.171 -27.813 7.07 1 117.17 ? CAX 560 208 A 1 HETATM 23 C CAZ 560 . . . I 3 -9.982 -26.949 6.057 1 122.57 ? CAZ 560 208 A 1 HETATM 24 C CBA 560 . . . I 3 -10.851 -26.207 5.358 1 121.38 ? CBA 560 208 A 1 HETATM 25 C CBC 560 . . . I 3 -15.451 -25.567 8.433 1 106.28 ? CBC 560 208 A 1 HETATM 26 C CBD 560 . . . I 3 -15.9 -26.952 8.865 1 102.35 ? CBD 560 208 A 1 HETATM 27 N NAA 560 . . . I 3 -19.619 -23.523 8.279 1 102.98 ? NAA 560 208 A 1 HETATM 28 N NAE 560 . . . I 3 -17.159 -23.854 4.398 1 112.73 ? NAE 560 208 A 1 HETATM 29 N NAS 560 . . . I 3 -12.52 -34.014 9.262 1 115.65 ? NAS 560 208 A 1 HETATM 30 O OAW 560 . . . I 3 -9.29 -28.703 7.23 1 123.19 ? OAW 560 208 A 1 HETATM 31 O OAY 560 . . . I 3 -8.68 -26.657 6.36 1 123.48 ? OAY 560 208 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #