data_7REG # _model_server_result.job_id IvP5H7gHnQlpGohrCne4xg _model_server_result.datetime_utc '2024-11-28 10:12:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7reg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7REG # _exptl.entry_id 7REG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7REG _cell.length_a 71.86 _cell.length_b 71.86 _cell.length_c 119.781 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7REG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 278 n n PA O2A NAP sing 279 n n PA O5B NAP sing 280 n n PA O3 NAP sing 281 n n O2A HOA2 NAP sing 282 n n O5B C5B NAP sing 283 n n C5B C4B NAP sing 284 n n C5B H51A NAP sing 285 n n C5B H52A NAP sing 286 n n C4B O4B NAP sing 287 n n C4B C3B NAP sing 288 n n C4B H4B NAP sing 289 n n O4B C1B NAP sing 290 n n C3B O3B NAP sing 291 n n C3B C2B NAP sing 292 n n C3B H3B NAP sing 293 n n O3B HO3A NAP sing 294 n n C2B O2B NAP sing 295 n n C2B C1B NAP sing 296 n n C2B H2B NAP sing 297 n n O2B P2B NAP sing 298 n n C1B N9A NAP sing 299 n n C1B H1B NAP sing 300 n n N9A C8A NAP sing 301 n y N9A C4A NAP sing 302 n y C8A N7A NAP doub 303 n y C8A H8A NAP sing 304 n n N7A C5A NAP sing 305 n y C5A C6A NAP sing 306 n y C5A C4A NAP doub 307 n y C6A N6A NAP sing 308 n n C6A N1A NAP doub 309 n y N6A H61A NAP sing 310 n n N6A H62A NAP sing 311 n n N1A C2A NAP sing 312 n y C2A N3A NAP doub 313 n y C2A H2A NAP sing 314 n n N3A C4A NAP sing 315 n y O3 PN NAP sing 316 n n PN O1N NAP doub 317 n n PN O2N NAP sing 318 n n PN O5D NAP sing 319 n n O5D C5D NAP sing 320 n n C5D C4D NAP sing 321 n n C5D H51N NAP sing 322 n n C5D H52N NAP sing 323 n n C4D O4D NAP sing 324 n n C4D C3D NAP sing 325 n n C4D H4D NAP sing 326 n n O4D C1D NAP sing 327 n n C3D O3D NAP sing 328 n n C3D C2D NAP sing 329 n n C3D H3D NAP sing 330 n n O3D HO3N NAP sing 331 n n C2D O2D NAP sing 332 n n C2D C1D NAP sing 333 n n C2D H2D NAP sing 334 n n O2D HO2N NAP sing 335 n n C1D N1N NAP sing 336 n n C1D H1D NAP sing 337 n n N1N C2N NAP sing 338 n y N1N C6N NAP doub 339 n y C2N C3N NAP doub 340 n y C2N H2N NAP sing 341 n n C3N C7N NAP sing 342 n n C3N C4N NAP sing 343 n y C7N O7N NAP doub 344 n n C7N N7N NAP sing 345 n n N7N H71N NAP sing 346 n n N7N H72N NAP sing 347 n n C4N C5N NAP doub 348 n y C4N H4N NAP sing 349 n n C5N C6N NAP sing 350 n y C5N H5N NAP sing 351 n n C6N H6N NAP sing 352 n n P2B O1X NAP doub 353 n n P2B O2X NAP sing 354 n n P2B O3X NAP sing 355 n n O2X HOP2 NAP sing 356 n n O3X HOP3 NAP sing 357 n n # _atom_sites.entry_id 7REG _atom_sites.fract_transf_matrix[1][1] 0.013916 _atom_sites.fract_transf_matrix[1][2] 0.008034 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4SI A 1 201 201 4SI DRG . D 3 NAP A 1 202 202 NAP NAP . E 4 CA A 1 203 1 CA CA . F 2 4SI B 1 201 201 4SI DRG . G 3 NAP B 1 202 202 NAP NAP . H 5 HOH A 1 301 54 HOH HOH . H 5 HOH A 2 302 25 HOH HOH . H 5 HOH A 3 303 107 HOH HOH . H 5 HOH A 4 304 144 HOH HOH . H 5 HOH A 5 305 139 HOH HOH . H 5 HOH A 6 306 140 HOH HOH . H 5 HOH A 7 307 81 HOH HOH . H 5 HOH A 8 308 120 HOH HOH . H 5 HOH A 9 309 96 HOH HOH . H 5 HOH A 10 310 64 HOH HOH . H 5 HOH A 11 311 46 HOH HOH . H 5 HOH A 12 312 77 HOH HOH . H 5 HOH A 13 313 17 HOH HOH . H 5 HOH A 14 314 104 HOH HOH . H 5 HOH A 15 315 47 HOH HOH . H 5 HOH A 16 316 37 HOH HOH . H 5 HOH A 17 317 95 HOH HOH . H 5 HOH A 18 318 126 HOH HOH . H 5 HOH A 19 319 20 HOH HOH . H 5 HOH A 20 320 79 HOH HOH . H 5 HOH A 21 321 56 HOH HOH . H 5 HOH A 22 322 5 HOH HOH . H 5 HOH A 23 323 143 HOH HOH . H 5 HOH A 24 324 13 HOH HOH . H 5 HOH A 25 325 33 HOH HOH . H 5 HOH A 26 326 70 HOH HOH . H 5 HOH A 27 327 34 HOH HOH . H 5 HOH A 28 328 1 HOH HOH . H 5 HOH A 29 329 71 HOH HOH . H 5 HOH A 30 330 151 HOH HOH . H 5 HOH A 31 331 153 HOH HOH . H 5 HOH A 32 332 125 HOH HOH . H 5 HOH A 33 333 9 HOH HOH . H 5 HOH A 34 334 112 HOH HOH . H 5 HOH A 35 335 136 HOH HOH . H 5 HOH A 36 336 66 HOH HOH . H 5 HOH A 37 337 39 HOH HOH . H 5 HOH A 38 338 22 HOH HOH . H 5 HOH A 39 339 15 HOH HOH . H 5 HOH A 40 340 164 HOH HOH . H 5 HOH A 41 341 31 HOH HOH . H 5 HOH A 42 342 50 HOH HOH . H 5 HOH A 43 343 6 HOH HOH . H 5 HOH A 44 344 30 HOH HOH . H 5 HOH A 45 345 91 HOH HOH . H 5 HOH A 46 346 49 HOH HOH . H 5 HOH A 47 347 90 HOH HOH . H 5 HOH A 48 348 24 HOH HOH . H 5 HOH A 49 349 23 HOH HOH . H 5 HOH A 50 350 27 HOH HOH . H 5 HOH A 51 351 44 HOH HOH . H 5 HOH A 52 352 43 HOH HOH . H 5 HOH A 53 353 130 HOH HOH . H 5 HOH A 54 354 118 HOH HOH . H 5 HOH A 55 355 141 HOH HOH . H 5 HOH A 56 356 58 HOH HOH . H 5 HOH A 57 357 75 HOH HOH . H 5 HOH A 58 358 131 HOH HOH . H 5 HOH A 59 359 55 HOH HOH . H 5 HOH A 60 360 89 HOH HOH . H 5 HOH A 61 361 135 HOH HOH . H 5 HOH A 62 362 128 HOH HOH . H 5 HOH A 63 363 137 HOH HOH . H 5 HOH A 64 364 149 HOH HOH . H 5 HOH A 65 365 59 HOH HOH . H 5 HOH A 66 366 93 HOH HOH . H 5 HOH A 67 367 147 HOH HOH . H 5 HOH A 68 368 73 HOH HOH . H 5 HOH A 69 369 88 HOH HOH . H 5 HOH A 70 370 19 HOH HOH . H 5 HOH A 71 371 138 HOH HOH . H 5 HOH A 72 372 163 HOH HOH . H 5 HOH A 73 373 161 HOH HOH . H 5 HOH A 74 374 148 HOH HOH . H 5 HOH A 75 375 109 HOH HOH . H 5 HOH A 76 376 110 HOH HOH . H 5 HOH A 77 377 155 HOH HOH . H 5 HOH A 78 378 98 HOH HOH . H 5 HOH A 79 379 100 HOH HOH . H 5 HOH A 80 380 108 HOH HOH . H 5 HOH A 81 381 48 HOH HOH . H 5 HOH A 82 382 162 HOH HOH . I 5 HOH B 1 301 4 HOH HOH . I 5 HOH B 2 302 78 HOH HOH . I 5 HOH B 3 303 133 HOH HOH . I 5 HOH B 4 304 152 HOH HOH . I 5 HOH B 5 305 129 HOH HOH . I 5 HOH B 6 306 8 HOH HOH . I 5 HOH B 7 307 28 HOH HOH . I 5 HOH B 8 308 80 HOH HOH . I 5 HOH B 9 309 94 HOH HOH . I 5 HOH B 10 310 103 HOH HOH . I 5 HOH B 11 311 36 HOH HOH . I 5 HOH B 12 312 14 HOH HOH . I 5 HOH B 13 313 18 HOH HOH . I 5 HOH B 14 314 87 HOH HOH . I 5 HOH B 15 315 29 HOH HOH . I 5 HOH B 16 316 38 HOH HOH . I 5 HOH B 17 317 21 HOH HOH . I 5 HOH B 18 318 57 HOH HOH . I 5 HOH B 19 319 65 HOH HOH . I 5 HOH B 20 320 51 HOH HOH . I 5 HOH B 21 321 119 HOH HOH . I 5 HOH B 22 322 11 HOH HOH . I 5 HOH B 23 323 10 HOH HOH . I 5 HOH B 24 324 42 HOH HOH . I 5 HOH B 25 325 72 HOH HOH . I 5 HOH B 26 326 41 HOH HOH . I 5 HOH B 27 327 12 HOH HOH . I 5 HOH B 28 328 69 HOH HOH . I 5 HOH B 29 329 52 HOH HOH . I 5 HOH B 30 330 92 HOH HOH . I 5 HOH B 31 331 134 HOH HOH . I 5 HOH B 32 332 32 HOH HOH . I 5 HOH B 33 333 113 HOH HOH . I 5 HOH B 34 334 83 HOH HOH . I 5 HOH B 35 335 86 HOH HOH . I 5 HOH B 36 336 157 HOH HOH . I 5 HOH B 37 337 82 HOH HOH . I 5 HOH B 38 338 74 HOH HOH . I 5 HOH B 39 339 3 HOH HOH . I 5 HOH B 40 340 111 HOH HOH . I 5 HOH B 41 341 45 HOH HOH . I 5 HOH B 42 342 16 HOH HOH . I 5 HOH B 43 343 67 HOH HOH . I 5 HOH B 44 344 62 HOH HOH . I 5 HOH B 45 345 142 HOH HOH . I 5 HOH B 46 346 121 HOH HOH . I 5 HOH B 47 347 35 HOH HOH . I 5 HOH B 48 348 146 HOH HOH . I 5 HOH B 49 349 61 HOH HOH . I 5 HOH B 50 350 26 HOH HOH . I 5 HOH B 51 351 124 HOH HOH . I 5 HOH B 52 352 2 HOH HOH . I 5 HOH B 53 353 115 HOH HOH . I 5 HOH B 54 354 7 HOH HOH . I 5 HOH B 55 355 158 HOH HOH . I 5 HOH B 56 356 156 HOH HOH . I 5 HOH B 57 357 101 HOH HOH . I 5 HOH B 58 358 76 HOH HOH . I 5 HOH B 59 359 116 HOH HOH . I 5 HOH B 60 360 122 HOH HOH . I 5 HOH B 61 361 63 HOH HOH . I 5 HOH B 62 362 60 HOH HOH . I 5 HOH B 63 363 99 HOH HOH . I 5 HOH B 64 364 145 HOH HOH . I 5 HOH B 65 365 127 HOH HOH . I 5 HOH B 66 366 105 HOH HOH . I 5 HOH B 67 367 40 HOH HOH . I 5 HOH B 68 368 97 HOH HOH . I 5 HOH B 69 369 85 HOH HOH . I 5 HOH B 70 370 68 HOH HOH . I 5 HOH B 71 371 160 HOH HOH . I 5 HOH B 72 372 114 HOH HOH . I 5 HOH B 73 373 84 HOH HOH . I 5 HOH B 74 374 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 3 83.844 -3.765 3.461 1 20.56 ? PA NAP 202 A 1 HETATM 2 O O1A NAP . . . D 3 85.04 -3.176 4.164 1 21.78 ? O1A NAP 202 A 1 HETATM 3 O O2A NAP . . . D 3 83.948 -5.175 2.951 1 20.67 -1 O2A NAP 202 A 1 HETATM 4 O O5B NAP . . . D 3 82.514 -3.704 4.445 1 21.63 ? O5B NAP 202 A 1 HETATM 5 C C5B NAP . . . D 3 82.1 -2.418 4.892 1 22.54 ? C5B NAP 202 A 1 HETATM 6 C C4B NAP . . . D 3 80.872 -2.63 5.824 1 23.12 ? C4B NAP 202 A 1 HETATM 7 O O4B NAP . . . D 3 81.441 -3.367 7.118 1 24.61 ? O4B NAP 202 A 1 HETATM 8 C C3B NAP . . . D 3 80.364 -1.557 6.274 1 25.13 ? C3B NAP 202 A 1 HETATM 9 O O3B NAP . . . D 3 79.294 -1.092 5.383 1 23.79 ? O3B NAP 202 A 1 HETATM 10 C C2B NAP . . . D 3 79.716 -2.051 7.738 1 27.01 ? C2B NAP 202 A 1 HETATM 11 O O2B NAP . . . D 3 78.662 -2.95 7.424 1 25.27 ? O2B NAP 202 A 1 HETATM 12 C C1B NAP . . . D 3 80.663 -2.784 8.288 1 24.9 ? C1B NAP 202 A 1 HETATM 13 N N9A NAP . . . D 3 81.644 -2.062 9.126 1 23.38 ? N9A NAP 202 A 1 HETATM 14 C C8A NAP . . . D 3 82.699 -1.343 8.742 1 21.64 ? C8A NAP 202 A 1 HETATM 15 N N7A NAP . . . D 3 83.324 -0.884 9.824 1 25.19 ? N7A NAP 202 A 1 HETATM 16 C C5A NAP . . . D 3 82.65 -1.324 10.915 1 23.09 ? C5A NAP 202 A 1 HETATM 17 C C6A NAP . . . D 3 82.776 -1.212 12.317 1 25.38 ? C6A NAP 202 A 1 HETATM 18 N N6A NAP . . . D 3 83.857 -0.455 12.907 1 23.21 ? N6A NAP 202 A 1 HETATM 19 N N1A NAP . . . D 3 81.888 -1.817 13.092 1 24.97 ? N1A NAP 202 A 1 HETATM 20 C C2A NAP . . . D 3 80.874 -2.534 12.601 1 24.76 ? C2A NAP 202 A 1 HETATM 21 N N3A NAP . . . D 3 80.72 -2.675 11.292 1 23.22 ? N3A NAP 202 A 1 HETATM 22 C C4A NAP . . . D 3 81.593 -2.073 10.456 1 23.06 ? C4A NAP 202 A 1 HETATM 23 O O3 NAP . . . D 3 83.343 -2.752 2.265 1 21.47 ? O3 NAP 202 A 1 HETATM 24 P PN NAP . . . D 3 84.26 -1.952 1.176 1 23.1 ? PN NAP 202 A 1 HETATM 25 O O1N NAP . . . D 3 83.252 -1.296 0.272 1 23.41 ? O1N NAP 202 A 1 HETATM 26 O O2N NAP . . . D 3 85.172 -0.961 1.862 1 22.41 -1 O2N NAP 202 A 1 HETATM 27 O O5D NAP . . . D 3 85.085 -3.131 0.392 1 20.11 ? O5D NAP 202 A 1 HETATM 28 C C5D NAP . . . D 3 84.395 -4.071 -0.403 1 19.69 ? C5D NAP 202 A 1 HETATM 29 C C4D NAP . . . D 3 85.124 -4.088 -1.605 1 21.91 ? C4D NAP 202 A 1 HETATM 30 O O4D NAP . . . D 3 86.55 -4.502 -1.32 1 21.56 ? O4D NAP 202 A 1 HETATM 31 C C3D NAP . . . D 3 84.624 -5.144 -2.683 1 26.75 ? C3D NAP 202 A 1 HETATM 32 O O3D NAP . . . D 3 84.929 -4.565 -4.044 1 28.01 ? O3D NAP 202 A 1 HETATM 33 C C2D NAP . . . D 3 85.389 -6.101 -2.551 1 25.41 ? C2D NAP 202 A 1 HETATM 34 O O2D NAP . . . D 3 85.516 -6.839 -3.829 1 32.29 ? O2D NAP 202 A 1 HETATM 35 C C1D NAP . . . D 3 86.838 -5.376 -2.216 1 23.82 ? C1D NAP 202 A 1 HETATM 36 N N1N NAP . . . D 3 87.768 -6.351 -1.726 1 23.14 ? N1N NAP 202 A 1 HETATM 37 C C2N NAP . . . D 3 88.986 -6.537 -2.451 1 21.77 ? C2N NAP 202 A 1 HETATM 38 C C3N NAP . . . D 3 90.024 -7.526 -1.983 1 20.31 ? C3N NAP 202 A 1 HETATM 39 C C7N NAP . . . D 3 91.33 -7.622 -2.747 1 20.63 ? C7N NAP 202 A 1 HETATM 40 O O7N NAP . . . D 3 91.531 -7.089 -3.826 1 22.55 ? O7N NAP 202 A 1 HETATM 41 N N7N NAP . . . D 3 92.288 -8.431 -2.071 1 15.37 ? N7N NAP 202 A 1 HETATM 42 C C4N NAP . . . D 3 89.817 -8.367 -0.706 1 20.52 ? C4N NAP 202 A 1 HETATM 43 C C5N NAP . . . D 3 88.45 -8.16 -0.04 1 20.07 ? C5N NAP 202 A 1 HETATM 44 C C6N NAP . . . D 3 87.497 -7.107 -0.543 1 21.8 ? C6N NAP 202 A 1 HETATM 45 P P2B NAP . . . D 3 77.071 -2.492 7.336 1 25.67 ? P2B NAP 202 A 1 HETATM 46 O O1X NAP . . . D 3 76.857 -1.669 6.093 1 26.27 ? O1X NAP 202 A 1 HETATM 47 O O2X NAP . . . D 3 76.747 -1.741 8.608 1 25.98 -1 O2X NAP 202 A 1 HETATM 48 O O3X NAP . . . D 3 76.252 -3.748 7.257 1 23.59 -1 O3X NAP 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #