data_7RER # _model_server_result.job_id 0gtR84bOZAgZsX8UljHVng _model_server_result.datetime_utc '2024-11-14 17:14:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":602}' # _entry.id 7RER # _exptl.entry_id 7RER _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RER _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RER _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 171 n n P O2P IMP sing 172 n n P O3P IMP sing 173 n n P O5' IMP sing 174 n n O2P HOP2 IMP sing 175 n n O3P HOP3 IMP sing 176 n n O5' C5' IMP sing 177 n n C5' C4' IMP sing 178 n n C5' "H5'1" IMP sing 179 n n C5' "H5'2" IMP sing 180 n n C4' O4' IMP sing 181 n n C4' C3' IMP sing 182 n n C4' H4' IMP sing 183 n n O4' C1' IMP sing 184 n n C3' O3' IMP sing 185 n n C3' C2' IMP sing 186 n n C3' H3' IMP sing 187 n n O3' HO3' IMP sing 188 n n C2' O2' IMP sing 189 n n C2' C1' IMP sing 190 n n C2' H2' IMP sing 191 n n O2' HO2' IMP sing 192 n n C1' N9 IMP sing 193 n n C1' H1' IMP sing 194 n n N9 C8 IMP sing 195 n y N9 C4 IMP sing 196 n y C8 N7 IMP doub 197 n y C8 H8 IMP sing 198 n n N7 C5 IMP sing 199 n y C5 C6 IMP sing 200 n n C5 C4 IMP doub 201 n y C6 O6 IMP doub 202 n n C6 N1 IMP sing 203 n n N1 C2 IMP sing 204 n n N1 HN1 IMP sing 205 n n C2 N3 IMP doub 206 n n C2 H2 IMP sing 207 n n N3 C4 IMP sing 208 n n # _atom_sites.entry_id 7RER _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 601 602 NAD NAD . J 3 IMP A 1 602 603 IMP IMP . K 2 NAD D 1 601 602 NAD NAD . L 3 IMP D 1 602 603 IMP IMP . M 2 NAD C 1 601 602 NAD NAD . N 3 IMP C 1 602 603 IMP IMP . O 2 NAD B 1 601 602 NAD NAD . P 3 IMP B 1 602 603 IMP IMP . Q 2 NAD E 1 601 602 NAD NAD . R 3 IMP E 1 602 603 IMP IMP . S 2 NAD H 1 601 602 NAD NAD . T 3 IMP H 1 602 603 IMP IMP . U 2 NAD G 1 601 602 NAD NAD . V 3 IMP G 1 602 603 IMP IMP . W 2 NAD F 1 601 602 NAD NAD . X 3 IMP F 1 602 603 IMP IMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . T 3 145.262 170.021 197.722 1 25.83 ? P IMP 602 H 1 HETATM 2 O O1P IMP . . . T 3 146.655 170.136 197.248 1 25.83 ? O1P IMP 602 H 1 HETATM 3 O O2P IMP . . . T 3 144.55 171.29 197.472 1 25.83 ? O2P IMP 602 H 1 HETATM 4 O O3P IMP . . . T 3 145.318 169.807 199.184 1 25.83 ? O3P IMP 602 H 1 HETATM 5 O O5' IMP . . . T 3 144.553 168.809 196.972 1 25.83 ? O5' IMP 602 H 1 HETATM 6 C C5' IMP . . . T 3 143.134 168.629 197.034 1 25.83 ? C5' IMP 602 H 1 HETATM 7 C C4' IMP . . . T 3 142.747 167.576 195.964 1 25.83 ? C4' IMP 602 H 1 HETATM 8 O O4' IMP . . . T 3 143.319 166.31 196.334 1 25.83 ? O4' IMP 602 H 1 HETATM 9 C C3' IMP . . . T 3 141.267 167.202 195.893 1 25.83 ? C3' IMP 602 H 1 HETATM 10 O O3' IMP . . . T 3 140.407 168.136 195.268 1 25.83 ? O3' IMP 602 H 1 HETATM 11 C C2' IMP . . . T 3 141.296 165.85 195.174 1 25.83 ? C2' IMP 602 H 1 HETATM 12 O O2' IMP . . . T 3 141.418 165.933 193.758 1 25.83 ? O2' IMP 602 H 1 HETATM 13 C C1' IMP . . . T 3 142.601 165.242 195.695 1 25.83 ? C1' IMP 602 H 1 HETATM 14 N N9 IMP . . . T 3 142.377 164.185 196.652 1 25.83 ? N9 IMP 602 H 1 HETATM 15 C C8 IMP . . . T 3 141.433 164.127 197.656 1 25.83 ? C8 IMP 602 H 1 HETATM 16 N N7 IMP . . . T 3 141.515 163.001 198.348 1 25.83 ? N7 IMP 602 H 1 HETATM 17 C C5 IMP . . . T 3 142.602 162.343 197.804 1 25.83 ? C5 IMP 602 H 1 HETATM 18 C C6 IMP . . . T 3 143.234 161.091 198.221 1 25.83 ? C6 IMP 602 H 1 HETATM 19 O O6 IMP . . . T 3 142.882 160.4 199.152 1 25.83 ? O6 IMP 602 H 1 HETATM 20 N N1 IMP . . . T 3 144.293 160.759 197.454 1 25.83 ? N1 IMP 602 H 1 HETATM 21 C C2 IMP . . . T 3 144.743 161.509 196.402 1 25.83 ? C2 IMP 602 H 1 HETATM 22 N N3 IMP . . . T 3 144.197 162.653 196.024 1 25.83 ? N3 IMP 602 H 1 HETATM 23 C C4 IMP . . . T 3 143.098 163.05 196.761 1 25.83 ? C4 IMP 602 H 1 HETATM 24 H "H5'1" IMP . . . T 3 142.836 168.284 198.03 1 25.83 ? "H5'1" IMP 602 H 1 HETATM 25 H "H5'2" IMP . . . T 3 142.608 169.565 196.813 1 25.83 ? "H5'2" IMP 602 H 1 HETATM 26 H H4' IMP . . . T 3 143.103 167.892 194.976 1 25.83 ? H4' IMP 602 H 1 HETATM 27 H H3' IMP . . . T 3 140.916 167.039 196.919 1 25.83 ? H3' IMP 602 H 1 HETATM 28 H HO3' IMP . . . T 3 140.903 168.584 194.561 1 25.83 ? HO3' IMP 602 H 1 HETATM 29 H H2' IMP . . . T 3 140.42 165.247 195.442 1 25.83 ? H2' IMP 602 H 1 HETATM 30 H HO2' IMP . . . T 3 141.107 166.784 193.406 1 25.83 ? HO2' IMP 602 H 1 HETATM 31 H H1' IMP . . . T 3 143.194 164.832 194.87 1 25.83 ? H1' IMP 602 H 1 HETATM 32 H H8 IMP . . . T 3 140.716 164.919 197.824 1 25.83 ? H8 IMP 602 H 1 HETATM 33 H HN1 IMP . . . T 3 144.788 159.916 197.718 1 25.83 ? HN1 IMP 602 H 1 HETATM 34 H H2 IMP . . . T 3 145.6 161.078 195.901 1 25.83 ? H2 IMP 602 H 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 360 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #