data_7RER # _model_server_result.job_id 33is-7dPYFt2P4CKEdr8gA _model_server_result.datetime_utc '2024-11-22 14:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":602}' # _entry.id 7RER # _exptl.entry_id 7RER _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.206 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RER _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RER _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 171 n n P O2P IMP sing 172 n n P O3P IMP sing 173 n n P O5' IMP sing 174 n n O2P HOP2 IMP sing 175 n n O3P HOP3 IMP sing 176 n n O5' C5' IMP sing 177 n n C5' C4' IMP sing 178 n n C5' "H5'1" IMP sing 179 n n C5' "H5'2" IMP sing 180 n n C4' O4' IMP sing 181 n n C4' C3' IMP sing 182 n n C4' H4' IMP sing 183 n n O4' C1' IMP sing 184 n n C3' O3' IMP sing 185 n n C3' C2' IMP sing 186 n n C3' H3' IMP sing 187 n n O3' HO3' IMP sing 188 n n C2' O2' IMP sing 189 n n C2' C1' IMP sing 190 n n C2' H2' IMP sing 191 n n O2' HO2' IMP sing 192 n n C1' N9 IMP sing 193 n n C1' H1' IMP sing 194 n n N9 C8 IMP sing 195 n y N9 C4 IMP sing 196 n y C8 N7 IMP doub 197 n y C8 H8 IMP sing 198 n n N7 C5 IMP sing 199 n y C5 C6 IMP sing 200 n n C5 C4 IMP doub 201 n y C6 O6 IMP doub 202 n n C6 N1 IMP sing 203 n n N1 C2 IMP sing 204 n n N1 HN1 IMP sing 205 n n C2 N3 IMP doub 206 n n C2 H2 IMP sing 207 n n N3 C4 IMP sing 208 n n # _atom_sites.entry_id 7RER _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 601 602 NAD NAD . J 3 IMP A 1 602 603 IMP IMP . K 2 NAD D 1 601 602 NAD NAD . L 3 IMP D 1 602 603 IMP IMP . M 2 NAD C 1 601 602 NAD NAD . N 3 IMP C 1 602 603 IMP IMP . O 2 NAD B 1 601 602 NAD NAD . P 3 IMP B 1 602 603 IMP IMP . Q 2 NAD E 1 601 602 NAD NAD . R 3 IMP E 1 602 603 IMP IMP . S 2 NAD H 1 601 602 NAD NAD . T 3 IMP H 1 602 603 IMP IMP . U 2 NAD G 1 601 602 NAD NAD . V 3 IMP G 1 602 603 IMP IMP . W 2 NAD F 1 601 602 NAD NAD . X 3 IMP F 1 602 603 IMP IMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . V 3 170.033 190.721 197.735 1 25.98 ? P IMP 602 G 1 HETATM 2 O O1P IMP . . . V 3 170.149 189.332 197.251 1 25.98 ? O1P IMP 602 G 1 HETATM 3 O O2P IMP . . . V 3 171.303 191.441 197.517 1 25.98 ? O2P IMP 602 G 1 HETATM 4 O O3P IMP . . . V 3 169.79 190.656 199.192 1 25.98 ? O3P IMP 602 G 1 HETATM 5 O O5' IMP . . . V 3 168.838 191.438 196.968 1 25.98 ? O5' IMP 602 G 1 HETATM 6 C C5' IMP . . . V 3 168.663 192.857 197.032 1 25.98 ? C5' IMP 602 G 1 HETATM 7 C C4' IMP . . . V 3 167.604 193.243 195.97 1 25.98 ? C4' IMP 602 G 1 HETATM 8 O O4' IMP . . . V 3 166.339 192.671 196.346 1 25.98 ? O4' IMP 602 G 1 HETATM 9 C C3' IMP . . . V 3 167.226 194.724 195.904 1 25.98 ? C3' IMP 602 G 1 HETATM 10 O O3' IMP . . . V 3 168.158 195.588 195.285 1 25.98 ? O3' IMP 602 G 1 HETATM 11 C C2' IMP . . . V 3 165.876 194.693 195.181 1 25.98 ? C2' IMP 602 G 1 HETATM 12 O O2' IMP . . . V 3 165.96 194.559 193.766 1 25.98 ? O2' IMP 602 G 1 HETATM 13 C C1' IMP . . . V 3 165.272 193.39 195.708 1 25.98 ? C1' IMP 602 G 1 HETATM 14 N N9 IMP . . . V 3 164.216 193.619 196.664 1 25.98 ? N9 IMP 602 G 1 HETATM 15 C C8 IMP . . . V 3 164.155 194.568 197.664 1 25.98 ? C8 IMP 602 G 1 HETATM 16 N N7 IMP . . . V 3 163.023 194.489 198.349 1 25.98 ? N7 IMP 602 G 1 HETATM 17 C C5 IMP . . . V 3 162.369 193.402 197.801 1 25.98 ? C5 IMP 602 G 1 HETATM 18 C C6 IMP . . . V 3 161.11 192.778 198.203 1 25.98 ? C6 IMP 602 G 1 HETATM 19 O O6 IMP . . . V 3 160.408 193.14 199.122 1 25.98 ? O6 IMP 602 G 1 HETATM 20 N N1 IMP . . . V 3 160.784 191.714 197.439 1 25.98 ? N1 IMP 602 G 1 HETATM 21 C C2 IMP . . . V 3 161.541 191.259 196.394 1 25.98 ? C2 IMP 602 G 1 HETATM 22 N N3 IMP . . . V 3 162.687 191.806 196.021 1 25.98 ? N3 IMP 602 G 1 HETATM 23 C C4 IMP . . . V 3 163.083 192.903 196.765 1 25.98 ? C4 IMP 602 G 1 HETATM 24 H "H5'1" IMP . . . V 3 168.328 193.157 198.031 1 25.98 ? "H5'1" IMP 602 G 1 HETATM 25 H "H5'2" IMP . . . V 3 169.599 193.379 196.802 1 25.98 ? "H5'2" IMP 602 G 1 HETATM 26 H H4' IMP . . . V 3 167.913 192.89 194.979 1 25.98 ? H4' IMP 602 G 1 HETATM 27 H H3' IMP . . . V 3 167.058 195.07 196.931 1 25.98 ? H3' IMP 602 G 1 HETATM 28 H HO3' IMP . . . V 3 168.596 195.102 194.566 1 25.98 ? HO3' IMP 602 G 1 HETATM 29 H H2' IMP . . . V 3 165.272 195.57 195.442 1 25.98 ? H2' IMP 602 G 1 HETATM 30 H HO2' IMP . . . V 3 166.801 194.888 193.409 1 25.98 ? HO2' IMP 602 G 1 HETATM 31 H H1' IMP . . . V 3 164.86 192.793 194.887 1 25.98 ? H1' IMP 602 G 1 HETATM 32 H H8 IMP . . . V 3 164.945 195.287 197.834 1 25.98 ? H8 IMP 602 G 1 HETATM 33 H HN1 IMP . . . V 3 159.937 191.223 197.697 1 25.98 ? HN1 IMP 602 G 1 HETATM 34 H H2 IMP . . . V 3 161.115 190.402 195.891 1 25.98 ? H2 IMP 602 G 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #