data_7RFH
#
_model_server_result.job_id            mYqiKKXHlqBM-QTDmmR47A 
_model_server_result.datetime_utc      '2024-12-27 00:29:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rfh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":601}' 
#
_entry.id    7RFH 
#
_exptl.entry_id    7RFH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RFH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RFH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7RFH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ATP A 1 601 601 ATP ATP . 
J 2 ATP A 1 602 602 ATP ATP . 
K 2 ATP B 1 601 601 ATP ATP . 
L 2 ATP B 1 602 602 ATP ATP . 
M 2 ATP C 1 601 601 ATP ATP . 
N 2 ATP C 1 602 602 ATP ATP . 
O 2 ATP D 1 601 601 ATP ATP . 
P 2 ATP D 1 602 602 ATP ATP . 
Q 2 ATP E 1 601 601 ATP ATP . 
R 2 ATP E 1 602 602 ATP ATP . 
S 2 ATP F 1 601 601 ATP ATP . 
T 2 ATP F 1 602 602 ATP ATP . 
U 2 ATP G 1 601 601 ATP ATP . 
V 2 ATP G 1 602 602 ATP ATP . 
W 2 ATP H 1 601 601 ATP ATP . 
X 2 ATP H 1 602 602 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 2 207.867 131.767 168.133 1 64.85 ? PG ATP 601 E 1 
HETATM 2 O O1G ATP . . . Q 2 208.404 133.039 168.656 1 64.85 ? O1G ATP 601 E 1 
HETATM 3 O O2G ATP . . . Q 2 207.64 130.839 169.265 1 64.85 ? O2G ATP 601 E 1 
HETATM 4 O O3G ATP . . . Q 2 206.55 132.08 167.533 1 64.85 ? O3G ATP 601 E 1 
HETATM 5 P PB ATP . . . Q 2 210.324 131.182 167.087 1 64.85 ? PB ATP 601 E 1 
HETATM 6 O O1B ATP . . . Q 2 210.921 131.186 168.447 1 64.85 ? O1B ATP 601 E 1 
HETATM 7 O O2B ATP . . . Q 2 210.78 132.311 166.24 1 64.85 ? O2B ATP 601 E 1 
HETATM 8 O O3B ATP . . . Q 2 208.758 131.112 167.041 1 64.85 ? O3B ATP 601 E 1 
HETATM 9 P PA ATP . . . Q 2 211.792 129.385 165.611 1 64.85 ? PA ATP 601 E 1 
HETATM 10 O O1A ATP . . . Q 2 212.028 130.208 164.402 1 64.85 ? O1A ATP 601 E 1 
HETATM 11 O O2A ATP . . . Q 2 211.635 127.974 165.17 1 64.85 ? O2A ATP 601 E 1 
HETATM 12 O O3A ATP . . . Q 2 210.51 129.773 166.409 1 64.85 ? O3A ATP 601 E 1 
HETATM 13 O O5' ATP . . . Q 2 212.948 129.5 166.714 1 64.85 ? O5' ATP 601 E 1 
HETATM 14 C C5' ATP . . . Q 2 213.068 128.494 167.726 1 64.85 ? C5' ATP 601 E 1 
HETATM 15 C C4' ATP . . . Q 2 214.556 128.269 168.107 1 64.85 ? C4' ATP 601 E 1 
HETATM 16 O O4' ATP . . . Q 2 215.256 127.685 166.991 1 64.85 ? O4' ATP 601 E 1 
HETATM 17 C C3' ATP . . . Q 2 215.359 129.544 168.455 1 64.85 ? C3' ATP 601 E 1 
HETATM 18 O O3' ATP . . . Q 2 216.41 129.157 169.343 1 64.85 ? O3' ATP 601 E 1 
HETATM 19 C C2' ATP . . . Q 2 215.938 129.95 167.102 1 64.85 ? C2' ATP 601 E 1 
HETATM 20 O O2' ATP . . . Q 2 217.085 130.807 167.188 1 64.85 ? O2' ATP 601 E 1 
HETATM 21 C C1' ATP . . . Q 2 216.247 128.589 166.464 1 64.85 ? C1' ATP 601 E 1 
HETATM 22 N N9 ATP . . . Q 2 216.215 128.531 165.006 1 64.85 ? N9 ATP 601 E 1 
HETATM 23 C C8 ATP . . . Q 2 215.525 129.328 164.085 1 64.85 ? C8 ATP 601 E 1 
HETATM 24 N N7 ATP . . . Q 2 215.662 128.893 162.818 1 64.85 ? N7 ATP 601 E 1 
HETATM 25 C C5 ATP . . . Q 2 216.434 127.784 162.986 1 64.85 ? C5 ATP 601 E 1 
HETATM 26 C C6 ATP . . . Q 2 216.89 126.876 162.039 1 64.85 ? C6 ATP 601 E 1 
HETATM 27 N N6 ATP . . . Q 2 216.584 126.941 160.735 1 64.85 ? N6 ATP 601 E 1 
HETATM 28 N N1 ATP . . . Q 2 217.639 125.837 162.357 1 64.85 ? N1 ATP 601 E 1 
HETATM 29 C C2 ATP . . . Q 2 217.931 125.715 163.652 1 64.85 ? C2 ATP 601 E 1 
HETATM 30 N N3 ATP . . . Q 2 217.518 126.506 164.65 1 64.85 ? N3 ATP 601 E 1 
HETATM 31 C C4 ATP . . . Q 2 216.777 127.551 164.27 1 64.85 ? C4 ATP 601 E 1 
HETATM 32 H "H5'1" ATP . . . Q 2 212.654 127.537 167.388 1 64.85 ? "H5'1" ATP 601 E 1 
HETATM 33 H "H5'2" ATP . . . Q 2 212.507 128.801 168.615 1 64.85 ? "H5'2" ATP 601 E 1 
HETATM 34 H H4' ATP . . . Q 2 214.58 127.575 168.956 1 64.85 ? H4' ATP 601 E 1 
HETATM 35 H H3' ATP . . . Q 2 214.725 130.33 168.883 1 64.85 ? H3' ATP 601 E 1 
HETATM 36 H HO3' ATP . . . Q 2 216.763 129.951 169.781 1 64.85 ? HO3' ATP 601 E 1 
HETATM 37 H H2' ATP . . . Q 2 215.153 130.459 166.529 1 64.85 ? H2' ATP 601 E 1 
HETATM 38 H HO2' ATP . . . Q 2 217.09 131.246 168.055 1 64.85 ? HO2' ATP 601 E 1 
HETATM 39 H H1' ATP . . . Q 2 217.24 128.256 166.787 1 64.85 ? H1' ATP 601 E 1 
HETATM 40 H H8 ATP . . . Q 2 214.939 130.181 164.394 1 64.85 ? H8 ATP 601 E 1 
HETATM 41 H HN61 ATP . . . Q 2 215.796 127.518 160.472 1 64.85 ? HN61 ATP 601 E 1 
HETATM 42 H HN62 ATP . . . Q 2 216.791 126.107 160.214 1 64.85 ? HN62 ATP 601 E 1 
HETATM 43 H H2 ATP . . . Q 2 218.559 124.871 163.927 1 64.85 ? H2 ATP 601 E 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#