data_7RFI
#
_model_server_result.job_id            '_A10I3Z5Lwt3qrED_uS2BQ' 
_model_server_result.datetime_utc      '2024-12-27 01:49:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":604}' 
#
_entry.id    7RFI 
#
_exptl.entry_id    7RFI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RFI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
? 4 BA N N 
? 4 FA N N 
? 4 JA N N 
? 4 NA N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 323 n n 
PA O2A NAD sing 324 n n 
PA O5B NAD sing 325 n n 
PA O3 NAD sing 326 n n 
O2A HOA2 NAD sing 327 n n 
O5B C5B NAD sing 328 n n 
C5B C4B NAD sing 329 n n 
C5B H51A NAD sing 330 n n 
C5B H52A NAD sing 331 n n 
C4B O4B NAD sing 332 n n 
C4B C3B NAD sing 333 n n 
C4B H4B NAD sing 334 n n 
O4B C1B NAD sing 335 n n 
C3B O3B NAD sing 336 n n 
C3B C2B NAD sing 337 n n 
C3B H3B NAD sing 338 n n 
O3B HO3A NAD sing 339 n n 
C2B O2B NAD sing 340 n n 
C2B C1B NAD sing 341 n n 
C2B H2B NAD sing 342 n n 
O2B HO2A NAD sing 343 n n 
C1B N9A NAD sing 344 n n 
C1B H1B NAD sing 345 n n 
N9A C8A NAD sing 346 n y 
N9A C4A NAD sing 347 n y 
C8A N7A NAD doub 348 n y 
C8A H8A NAD sing 349 n n 
N7A C5A NAD sing 350 n y 
C5A C6A NAD sing 351 n y 
C5A C4A NAD doub 352 n y 
C6A N6A NAD sing 353 n n 
C6A N1A NAD doub 354 n y 
N6A H61A NAD sing 355 n n 
N6A H62A NAD sing 356 n n 
N1A C2A NAD sing 357 n y 
C2A N3A NAD doub 358 n y 
C2A H2A NAD sing 359 n n 
N3A C4A NAD sing 360 n y 
O3 PN NAD sing 361 n n 
PN O1N NAD doub 362 n n 
PN O2N NAD sing 363 n n 
PN O5D NAD sing 364 n n 
O5D C5D NAD sing 365 n n 
C5D C4D NAD sing 366 n n 
C5D H51N NAD sing 367 n n 
C5D H52N NAD sing 368 n n 
C4D O4D NAD sing 369 n n 
C4D C3D NAD sing 370 n n 
C4D H4D NAD sing 371 n n 
O4D C1D NAD sing 372 n n 
C3D O3D NAD sing 373 n n 
C3D C2D NAD sing 374 n n 
C3D H3D NAD sing 375 n n 
O3D HO3N NAD sing 376 n n 
C2D O2D NAD sing 377 n n 
C2D C1D NAD sing 378 n n 
C2D H2D NAD sing 379 n n 
O2D HO2N NAD sing 380 n n 
C1D N1N NAD sing 381 n n 
C1D H1D NAD sing 382 n n 
N1N C2N NAD sing 383 n y 
N1N C6N NAD doub 384 n y 
C2N C3N NAD doub 385 n y 
C2N H2N NAD sing 386 n n 
C3N C7N NAD sing 387 n n 
C3N C4N NAD sing 388 n y 
C7N O7N NAD doub 389 n n 
C7N N7N NAD sing 390 n n 
N7N H71N NAD sing 391 n n 
N7N H72N NAD sing 392 n n 
C4N C5N NAD doub 393 n y 
C4N H4N NAD sing 394 n n 
C5N C6N NAD sing 395 n y 
C5N H5N NAD sing 396 n n 
C6N H6N NAD sing 397 n n 
#
_atom_sites.entry_id                     7RFI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GTP A 1 601 601 GTP GTP . 
J 2 GTP A 1 602 602 GTP GTP . 
K 3 IMP A 1 603 603 IMP IMP . 
L 4 NAD A 1 604 604 NAD NAD . 
M 2 GTP B 1 601 601 GTP GTP . 
N 2 GTP B 1 602 602 GTP GTP . 
O 3 IMP B 1 603 603 IMP IMP . 
P 4 NAD B 1 604 604 NAD NAD . 
Q 2 GTP C 1 601 601 GTP GTP . 
R 2 GTP C 1 602 602 GTP GTP . 
S 3 IMP C 1 603 603 IMP IMP . 
T 4 NAD C 1 604 604 NAD NAD . 
U 2 GTP D 1 601 601 GTP GTP . 
V 2 GTP D 1 602 602 GTP GTP . 
W 3 IMP D 1 603 603 IMP IMP . 
X 4 NAD D 1 604 604 NAD NAD . 
Y 2 GTP E 1 601 601 GTP GTP . 
Z 2 GTP E 1 602 602 GTP GTP . 
AA 3 IMP E 1 603 603 IMP IMP . 
BA 4 NAD E 1 604 604 NAD NAD . 
CA 2 GTP F 1 601 601 GTP GTP . 
DA 2 GTP F 1 602 602 GTP GTP . 
EA 3 IMP F 1 603 603 IMP IMP . 
FA 4 NAD F 1 604 604 NAD NAD . 
GA 2 GTP G 1 601 601 GTP GTP . 
HA 2 GTP G 1 602 602 GTP GTP . 
IA 3 IMP G 1 603 603 IMP IMP . 
JA 4 NAD G 1 604 604 NAD NAD . 
KA 2 GTP H 1 601 601 GTP GTP . 
LA 2 GTP H 1 602 602 GTP GTP . 
MA 3 IMP H 1 603 603 IMP IMP . 
NA 4 NAD H 1 604 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . FA 4 200.394 182.243 142.823 1 37.18 ? PA NAD 604 F 1 
HETATM 2 O O1A NAD . . . FA 4 199.954 183.102 143.931 1 37.18 ? O1A NAD 604 F 1 
HETATM 3 O O2A NAD . . . FA 4 201.133 182.854 141.701 1 37.18 ? O2A NAD 604 F 1 
HETATM 4 O O5B NAD . . . FA 4 201.365 181.146 143.467 1 37.18 ? O5B NAD 604 F 1 
HETATM 5 C C5B NAD . . . FA 4 201.835 180.031 142.736 1 37.18 ? C5B NAD 604 F 1 
HETATM 6 C C4B NAD . . . FA 4 202.673 179.121 143.637 1 37.18 ? C4B NAD 604 F 1 
HETATM 7 O O4B NAD . . . FA 4 203.857 179.802 144.04 1 37.18 ? O4B NAD 604 F 1 
HETATM 8 C C3B NAD . . . FA 4 201.925 178.696 144.906 1 37.18 ? C3B NAD 604 F 1 
HETATM 9 O O3B NAD . . . FA 4 202.315 177.371 145.229 1 37.18 ? O3B NAD 604 F 1 
HETATM 10 C C2B NAD . . . FA 4 202.429 179.729 145.923 1 37.18 ? C2B NAD 604 F 1 
HETATM 11 O O2B NAD . . . FA 4 202.322 179.292 147.271 1 37.18 ? O2B NAD 604 F 1 
HETATM 12 C C1B NAD . . . FA 4 203.875 179.921 145.457 1 37.18 ? C1B NAD 604 F 1 
HETATM 13 N N9A NAD . . . FA 4 204.518 181.205 145.831 1 37.18 ? N9A NAD 604 F 1 
HETATM 14 C C8A NAD . . . FA 4 203.987 182.47 145.901 1 37.18 ? C8A NAD 604 F 1 
HETATM 15 N N7A NAD . . . FA 4 204.848 183.4 146.226 1 37.18 ? N7A NAD 604 F 1 
HETATM 16 C C5A NAD . . . FA 4 206.038 182.676 146.397 1 37.18 ? C5A NAD 604 F 1 
HETATM 17 C C6A NAD . . . FA 4 207.368 183.003 146.751 1 37.18 ? C6A NAD 604 F 1 
HETATM 18 N N6A NAD . . . FA 4 207.818 184.211 147.024 1 37.18 ? N6A NAD 604 F 1 
HETATM 19 N N1A NAD . . . FA 4 208.313 182.071 146.845 1 37.18 ? N1A NAD 604 F 1 
HETATM 20 C C2A NAD . . . FA 4 207.963 180.817 146.611 1 37.18 ? C2A NAD 604 F 1 
HETATM 21 N N3A NAD . . . FA 4 206.767 180.361 146.271 1 37.18 ? N3A NAD 604 F 1 
HETATM 22 C C4A NAD . . . FA 4 205.839 181.352 146.178 1 37.18 ? C4A NAD 604 F 1 
HETATM 23 O O3 NAD . . . FA 4 199.26 181.337 142.201 1 37.18 ? O3 NAD 604 F 1 
HETATM 24 P PN NAD . . . FA 4 197.752 181.714 142.444 1 37.18 ? PN NAD 604 F 1 
HETATM 25 O O1N NAD . . . FA 4 197.464 181.701 143.888 1 37.18 ? O1N NAD 604 F 1 
HETATM 26 O O2N NAD . . . FA 4 196.962 180.785 141.618 1 37.18 ? O2N NAD 604 F 1 
HETATM 27 O O5D NAD . . . FA 4 197.435 183.176 141.857 1 37.18 ? O5D NAD 604 F 1 
HETATM 28 C C5D NAD . . . FA 4 197.658 183.484 140.489 1 37.18 ? C5D NAD 604 F 1 
HETATM 29 C C4D NAD . . . FA 4 196.455 184.194 139.846 1 37.18 ? C4D NAD 604 F 1 
HETATM 30 O O4D NAD . . . FA 4 195.342 183.317 139.728 1 37.18 ? O4D NAD 604 F 1 
HETATM 31 C C3D NAD . . . FA 4 195.976 185.405 140.646 1 37.18 ? C3D NAD 604 F 1 
HETATM 32 O O3D NAD . . . FA 4 195.458 186.357 139.732 1 37.18 ? O3D NAD 604 F 1 
HETATM 33 C C2D NAD . . . FA 4 194.868 184.803 141.515 1 37.18 ? C2D NAD 604 F 1 
HETATM 34 O O2D NAD . . . FA 4 193.935 185.768 142.008 1 37.18 ? O2D NAD 604 F 1 
HETATM 35 C C1D NAD . . . FA 4 194.262 183.784 140.53 1 37.18 ? C1D NAD 604 F 1 
HETATM 36 N N1N NAD . . . FA 4 193.508 182.67 141.187 1 37.18 ? N1N NAD 604 F 1 
HETATM 37 C C2N NAD . . . FA 4 192.449 182.953 141.998 1 37.18 ? C2N NAD 604 F 1 
HETATM 38 C C3N NAD . . . FA 4 191.746 181.935 142.694 1 37.18 ? C3N NAD 604 F 1 
HETATM 39 C C7N NAD . . . FA 4 190.662 182.198 143.567 1 37.18 ? C7N NAD 604 F 1 
HETATM 40 O O7N NAD . . . FA 4 189.853 181.328 143.86 1 37.18 ? O7N NAD 604 F 1 
HETATM 41 N N7N NAD . . . FA 4 190.565 183.381 144.124 1 37.18 ? N7N NAD 604 F 1 
HETATM 42 C C4N NAD . . . FA 4 192.117 180.594 142.48 1 37.18 ? C4N NAD 604 F 1 
HETATM 43 C C5N NAD . . . FA 4 193.193 180.318 141.625 1 37.18 ? C5N NAD 604 F 1 
HETATM 44 C C6N NAD . . . FA 4 193.874 181.371 140.989 1 37.18 ? C6N NAD 604 F 1 
HETATM 45 H H51A NAD . . . FA 4 200.995 179.457 142.346 1 37.18 ? H51A NAD 604 F 1 
HETATM 46 H H52A NAD . . . FA 4 202.445 180.366 141.898 1 37.18 ? H52A NAD 604 F 1 
HETATM 47 H H4B NAD . . . FA 4 202.941 178.233 143.064 1 37.18 ? H4B NAD 604 F 1 
HETATM 48 H H3B NAD . . . FA 4 200.845 178.76 144.774 1 37.18 ? H3B NAD 604 F 1 
HETATM 49 H HO3A NAD . . . FA 4 201.785 177.05 145.958 1 37.18 ? HO3A NAD 604 F 1 
HETATM 50 H H2B NAD . . . FA 4 201.88 180.66 145.79 1 37.18 ? H2B NAD 604 F 1 
HETATM 51 H HO2A NAD . . . FA 4 201.471 179.566 147.615 1 37.18 ? HO2A NAD 604 F 1 
HETATM 52 H H1B NAD . . . FA 4 204.464 179.102 145.87 1 37.18 ? H1B NAD 604 F 1 
HETATM 53 H H8A NAD . . . FA 4 202.951 182.678 145.681 1 37.18 ? H8A NAD 604 F 1 
HETATM 54 H H61A NAD . . . FA 4 207.177 184.99 147.045 1 37.18 ? H61A NAD 604 F 1 
HETATM 55 H H62A NAD . . . FA 4 208.782 184.296 147.307 1 37.18 ? H62A NAD 604 F 1 
HETATM 56 H H2A NAD . . . FA 4 208.745 180.079 146.704 1 37.18 ? H2A NAD 604 F 1 
HETATM 57 H H51N NAD . . . FA 4 197.875 182.584 139.915 1 37.18 ? H51N NAD 604 F 1 
HETATM 58 H H52N NAD . . . FA 4 198.525 184.139 140.417 1 37.18 ? H52N NAD 604 F 1 
HETATM 59 H H4D NAD . . . FA 4 196.763 184.521 138.854 1 37.18 ? H4D NAD 604 F 1 
HETATM 60 H H3D NAD . . . FA 4 196.775 185.832 141.251 1 37.18 ? H3D NAD 604 F 1 
HETATM 61 H HO3N NAD . . . FA 4 195.676 187.224 140.08 1 37.18 ? HO3N NAD 604 F 1 
HETATM 62 H H2D NAD . . . FA 4 195.323 184.28 142.355 1 37.18 ? H2D NAD 604 F 1 
HETATM 63 H HO2N NAD . . . FA 4 194.363 186.619 142.124 1 37.18 ? HO2N NAD 604 F 1 
HETATM 64 H H1D NAD . . . FA 4 193.583 184.332 139.877 1 37.18 ? H1D NAD 604 F 1 
HETATM 65 H H2N NAD . . . FA 4 192.169 183.992 142.081 1 37.18 ? H2N NAD 604 F 1 
HETATM 66 H H71N NAD . . . FA 4 189.776 183.534 144.733 1 37.18 ? H71N NAD 604 F 1 
HETATM 67 H H72N NAD . . . FA 4 191.223 184.121 143.927 1 37.18 ? H72N NAD 604 F 1 
HETATM 68 H H4N NAD . . . FA 4 191.601 179.781 142.968 1 37.18 ? H4N NAD 604 F 1 
HETATM 69 H H5N NAD . . . FA 4 193.53 179.3 141.504 1 37.18 ? H5N NAD 604 F 1 
HETATM 70 H H6N NAD . . . FA 4 194.73 181.164 140.364 1 37.18 ? H6N NAD 604 F 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           70 
#