data_7RFI # _model_server_result.job_id 7xtf7t-VLG0zNkCBBCdHsg _model_server_result.datetime_utc '2024-12-27 02:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":604}' # _entry.id 7RFI # _exptl.entry_id 7RFI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RFI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 P N N ? 4 T N N ? 4 X N N ? 4 BA N N ? 4 FA N N ? 4 JA N N ? 4 NA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 323 n n PA O2A NAD sing 324 n n PA O5B NAD sing 325 n n PA O3 NAD sing 326 n n O2A HOA2 NAD sing 327 n n O5B C5B NAD sing 328 n n C5B C4B NAD sing 329 n n C5B H51A NAD sing 330 n n C5B H52A NAD sing 331 n n C4B O4B NAD sing 332 n n C4B C3B NAD sing 333 n n C4B H4B NAD sing 334 n n O4B C1B NAD sing 335 n n C3B O3B NAD sing 336 n n C3B C2B NAD sing 337 n n C3B H3B NAD sing 338 n n O3B HO3A NAD sing 339 n n C2B O2B NAD sing 340 n n C2B C1B NAD sing 341 n n C2B H2B NAD sing 342 n n O2B HO2A NAD sing 343 n n C1B N9A NAD sing 344 n n C1B H1B NAD sing 345 n n N9A C8A NAD sing 346 n y N9A C4A NAD sing 347 n y C8A N7A NAD doub 348 n y C8A H8A NAD sing 349 n n N7A C5A NAD sing 350 n y C5A C6A NAD sing 351 n y C5A C4A NAD doub 352 n y C6A N6A NAD sing 353 n n C6A N1A NAD doub 354 n y N6A H61A NAD sing 355 n n N6A H62A NAD sing 356 n n N1A C2A NAD sing 357 n y C2A N3A NAD doub 358 n y C2A H2A NAD sing 359 n n N3A C4A NAD sing 360 n y O3 PN NAD sing 361 n n PN O1N NAD doub 362 n n PN O2N NAD sing 363 n n PN O5D NAD sing 364 n n O5D C5D NAD sing 365 n n C5D C4D NAD sing 366 n n C5D H51N NAD sing 367 n n C5D H52N NAD sing 368 n n C4D O4D NAD sing 369 n n C4D C3D NAD sing 370 n n C4D H4D NAD sing 371 n n O4D C1D NAD sing 372 n n C3D O3D NAD sing 373 n n C3D C2D NAD sing 374 n n C3D H3D NAD sing 375 n n O3D HO3N NAD sing 376 n n C2D O2D NAD sing 377 n n C2D C1D NAD sing 378 n n C2D H2D NAD sing 379 n n O2D HO2N NAD sing 380 n n C1D N1N NAD sing 381 n n C1D H1D NAD sing 382 n n N1N C2N NAD sing 383 n y N1N C6N NAD doub 384 n y C2N C3N NAD doub 385 n y C2N H2N NAD sing 386 n n C3N C7N NAD sing 387 n n C3N C4N NAD sing 388 n y C7N O7N NAD doub 389 n n C7N N7N NAD sing 390 n n N7N H71N NAD sing 391 n n N7N H72N NAD sing 392 n n C4N C5N NAD doub 393 n y C4N H4N NAD sing 394 n n C5N C6N NAD sing 395 n y C5N H5N NAD sing 396 n n C6N H6N NAD sing 397 n n # _atom_sites.entry_id 7RFI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 IMP A 1 603 603 IMP IMP . L 4 NAD A 1 604 604 NAD NAD . M 2 GTP B 1 601 601 GTP GTP . N 2 GTP B 1 602 602 GTP GTP . O 3 IMP B 1 603 603 IMP IMP . P 4 NAD B 1 604 604 NAD NAD . Q 2 GTP C 1 601 601 GTP GTP . R 2 GTP C 1 602 602 GTP GTP . S 3 IMP C 1 603 603 IMP IMP . T 4 NAD C 1 604 604 NAD NAD . U 2 GTP D 1 601 601 GTP GTP . V 2 GTP D 1 602 602 GTP GTP . W 3 IMP D 1 603 603 IMP IMP . X 4 NAD D 1 604 604 NAD NAD . Y 2 GTP E 1 601 601 GTP GTP . Z 2 GTP E 1 602 602 GTP GTP . AA 3 IMP E 1 603 603 IMP IMP . BA 4 NAD E 1 604 604 NAD NAD . CA 2 GTP F 1 601 601 GTP GTP . DA 2 GTP F 1 602 602 GTP GTP . EA 3 IMP F 1 603 603 IMP IMP . FA 4 NAD F 1 604 604 NAD NAD . GA 2 GTP G 1 601 601 GTP GTP . HA 2 GTP G 1 602 602 GTP GTP . IA 3 IMP G 1 603 603 IMP IMP . JA 4 NAD G 1 604 604 NAD NAD . KA 2 GTP H 1 601 601 GTP GTP . LA 2 GTP H 1 602 602 GTP GTP . MA 3 IMP H 1 603 603 IMP IMP . NA 4 NAD H 1 604 604 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . L 4 154.672 136.581 194.076 1 37.59 ? PA NAD 604 A 1 HETATM 2 O O1A NAD . . . L 4 153.828 136.938 192.922 1 37.59 ? O1A NAD 604 A 1 HETATM 3 O O2A NAD . . . L 4 154.297 135.354 194.813 1 37.59 ? O2A NAD 604 A 1 HETATM 4 O O5B NAD . . . L 4 156.17 136.363 193.553 1 37.59 ? O5B NAD 604 A 1 HETATM 5 C C5B NAD . . . L 4 157.191 135.806 194.365 1 37.59 ? C5B NAD 604 A 1 HETATM 6 C C4B NAD . . . L 4 158.026 134.805 193.558 1 37.59 ? C4B NAD 604 A 1 HETATM 7 O O4B NAD . . . L 4 157.249 133.653 193.237 1 37.59 ? O4B NAD 604 A 1 HETATM 8 C C3B NAD . . . L 4 158.536 135.394 192.238 1 37.59 ? C3B NAD 604 A 1 HETATM 9 O O3B NAD . . . L 4 159.84 134.885 192.016 1 37.59 ? O3B NAD 604 A 1 HETATM 10 C C2B NAD . . . L 4 157.505 134.846 191.239 1 37.59 ? C2B NAD 604 A 1 HETATM 11 O O2B NAD . . . L 4 157.952 134.834 189.892 1 37.59 ? O2B NAD 604 A 1 HETATM 12 C C1B NAD . . . L 4 157.258 133.457 191.829 1 37.59 ? C1B NAD 604 A 1 HETATM 13 N N9A NAD . . . L 4 155.999 132.792 191.408 1 37.59 ? N9A NAD 604 A 1 HETATM 14 C C8A NAD . . . L 4 154.729 133.303 191.295 1 37.59 ? C8A NAD 604 A 1 HETATM 15 N N7A NAD . . . L 4 153.822 132.423 190.953 1 37.59 ? N7A NAD 604 A 1 HETATM 16 C C5A NAD . . . L 4 154.566 131.244 190.814 1 37.59 ? C5A NAD 604 A 1 HETATM 17 C C6A NAD . . . L 4 154.268 129.902 190.478 1 37.59 ? C6A NAD 604 A 1 HETATM 18 N N6A NAD . . . L 4 153.074 129.418 190.204 1 37.59 ? N6A NAD 604 A 1 HETATM 19 N N1A NAD . . . L 4 155.219 128.974 190.417 1 37.59 ? N1A NAD 604 A 1 HETATM 20 C C2A NAD . . . L 4 156.46 129.349 190.676 1 37.59 ? C2A NAD 604 A 1 HETATM 21 N N3A NAD . . . L 4 156.888 130.555 191.018 1 37.59 ? N3A NAD 604 A 1 HETATM 22 C C4A NAD . . . L 4 155.88 131.468 191.069 1 37.59 ? C4A NAD 604 A 1 HETATM 23 O O3 NAD . . . L 4 154.602 137.738 195.145 1 37.59 ? O3 NAD 604 A 1 HETATM 24 P PN NAD . . . L 4 155.355 139.087 194.83 1 37.59 ? PN NAD 604 A 1 HETATM 25 O O1N NAD . . . L 4 155.321 139.438 193.405 1 37.59 ? O1N NAD 604 A 1 HETATM 26 O O2N NAD . . . L 4 156.647 139.087 195.543 1 37.59 ? O2N NAD 604 A 1 HETATM 27 O O5D NAD . . . L 4 154.418 140.146 195.595 1 37.59 ? O5D NAD 604 A 1 HETATM 28 C C5D NAD . . . L 4 154.084 139.962 196.963 1 37.59 ? C5D NAD 604 A 1 HETATM 29 C C4D NAD . . . L 4 153.176 141.069 197.513 1 37.59 ? C4D NAD 604 A 1 HETATM 30 O O4D NAD . . . L 4 153.885 142.293 197.609 1 37.59 ? O4D NAD 604 A 1 HETATM 31 C C3D NAD . . . L 4 151.943 141.338 196.649 1 37.59 ? C3D NAD 604 A 1 HETATM 32 O O3D NAD . . . L 4 150.882 141.783 197.474 1 37.59 ? O3D NAD 604 A 1 HETATM 33 C C2D NAD . . . L 4 152.426 142.452 195.717 1 37.59 ? C2D NAD 604 A 1 HETATM 34 O O2D NAD . . . L 4 151.374 143.289 195.235 1 37.59 ? O2D NAD 604 A 1 HETATM 35 C C1D NAD . . . L 4 153.415 143.204 196.622 1 37.59 ? C1D NAD 604 A 1 HETATM 36 N N1N NAD . . . L 4 154.532 143.855 195.875 1 37.59 ? N1N NAD 604 A 1 HETATM 37 C C2N NAD . . . L 4 154.277 144.914 195.056 1 37.59 ? C2N NAD 604 A 1 HETATM 38 C C3N NAD . . . L 4 155.314 145.57 194.345 1 37.59 ? C3N NAD 604 A 1 HETATM 39 C C7N NAD . . . L 4 155.092 146.686 193.504 1 37.59 ? C7N NAD 604 A 1 HETATM 40 O O7N NAD . . . L 4 155.965 147.52 193.306 1 37.59 ? O7N NAD 604 A 1 HETATM 41 N N7N NAD . . . L 4 153.94 146.802 192.891 1 37.59 ? N7N NAD 604 A 1 HETATM 42 C C4N NAD . . . L 4 156.638 145.132 194.526 1 37.59 ? C4N NAD 604 A 1 HETATM 43 C C5N NAD . . . L 4 156.883 144.053 195.386 1 37.59 ? C5N NAD 604 A 1 HETATM 44 C C6N NAD . . . L 4 155.813 143.425 196.042 1 37.59 ? C6N NAD 604 A 1 HETATM 45 H H51A NAD . . . L 4 156.782 135.301 195.239 1 37.59 ? H51A NAD 604 A 1 HETATM 46 H H52A NAD . . . L 4 157.844 136.605 194.713 1 37.59 ? H52A NAD 604 A 1 HETATM 47 H H4B NAD . . . L 4 158.877 134.503 194.168 1 37.59 ? H4B NAD 604 A 1 HETATM 48 H H3B NAD . . . L 4 158.544 136.483 192.253 1 37.59 ? H3B NAD 604 A 1 HETATM 49 H HO3A NAD . . . L 4 160.249 135.362 191.291 1 37.59 ? HO3A NAD 604 A 1 HETATM 50 H H2B NAD . . . L 4 156.589 135.432 191.315 1 37.59 ? H2B NAD 604 A 1 HETATM 51 H HO2A NAD . . . L 4 157.746 135.683 189.496 1 37.59 ? HO2A NAD 604 A 1 HETATM 52 H H1B NAD . . . L 4 158.102 132.822 191.56 1 37.59 ? H1B NAD 604 A 1 HETATM 53 H H8A NAD . . . L 4 154.496 134.338 191.495 1 37.59 ? H8A NAD 604 A 1 HETATM 54 H H61A NAD . . . L 4 152.273 130.032 190.18 1 37.59 ? H61A NAD 604 A 1 HETATM 55 H H62A NAD . . . L 4 153.011 128.442 189.956 1 37.59 ? H62A NAD 604 A 1 HETATM 56 H H2A NAD . . . L 4 157.213 128.577 190.615 1 37.59 ? H2A NAD 604 A 1 HETATM 57 H H51N NAD . . . L 4 154.993 139.925 197.562 1 37.59 ? H51N NAD 604 A 1 HETATM 58 H H52N NAD . . . L 4 153.566 139.013 197.084 1 37.59 ? H52N NAD 604 A 1 HETATM 59 H H4D NAD . . . L 4 152.855 140.758 198.507 1 37.59 ? H4D NAD 604 A 1 HETATM 60 H H3D NAD . . . L 4 151.649 140.444 196.099 1 37.59 ? H3D NAD 604 A 1 HETATM 61 H HO3N NAD . . . L 4 150.068 141.492 197.058 1 37.59 ? HO3N NAD 604 A 1 HETATM 62 H H2D NAD . . . L 4 152.95 141.999 194.876 1 37.59 ? H2D NAD 604 A 1 HETATM 63 H HO2N NAD . . . L 4 150.547 142.805 195.265 1 37.59 ? HO2N NAD 604 A 1 HETATM 64 H H1D NAD . . . L 4 152.853 143.974 197.149 1 37.59 ? H1D NAD 604 A 1 HETATM 65 H H2N NAD . . . L 4 153.248 145.235 194.988 1 37.59 ? H2N NAD 604 A 1 HETATM 66 H H71N NAD . . . L 4 153.823 147.591 192.271 1 37.59 ? H71N NAD 604 A 1 HETATM 67 H H72N NAD . . . L 4 153.219 146.107 192.999 1 37.59 ? H72N NAD 604 A 1 HETATM 68 H H4N NAD . . . L 4 157.461 145.604 194.011 1 37.59 ? H4N NAD 604 A 1 HETATM 69 H H5N NAD . . . L 4 157.892 143.685 195.5 1 37.59 ? H5N NAD 604 A 1 HETATM 70 H H6N NAD . . . L 4 155.993 142.566 196.67 1 37.59 ? H6N NAD 604 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 70 #