data_7RFI
#
_model_server_result.job_id            dkAuH4-UPPCjGRZY6bBamA 
_model_server_result.datetime_utc      '2024-12-27 01:56:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rfi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":604}' 
#
_entry.id    7RFI 
#
_exptl.entry_id    7RFI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RFI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RFI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 X N N 
? 4 BA N N 
? 4 FA N N 
? 4 JA N N 
? 4 NA N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 323 n n 
PA O2A NAD sing 324 n n 
PA O5B NAD sing 325 n n 
PA O3 NAD sing 326 n n 
O2A HOA2 NAD sing 327 n n 
O5B C5B NAD sing 328 n n 
C5B C4B NAD sing 329 n n 
C5B H51A NAD sing 330 n n 
C5B H52A NAD sing 331 n n 
C4B O4B NAD sing 332 n n 
C4B C3B NAD sing 333 n n 
C4B H4B NAD sing 334 n n 
O4B C1B NAD sing 335 n n 
C3B O3B NAD sing 336 n n 
C3B C2B NAD sing 337 n n 
C3B H3B NAD sing 338 n n 
O3B HO3A NAD sing 339 n n 
C2B O2B NAD sing 340 n n 
C2B C1B NAD sing 341 n n 
C2B H2B NAD sing 342 n n 
O2B HO2A NAD sing 343 n n 
C1B N9A NAD sing 344 n n 
C1B H1B NAD sing 345 n n 
N9A C8A NAD sing 346 n y 
N9A C4A NAD sing 347 n y 
C8A N7A NAD doub 348 n y 
C8A H8A NAD sing 349 n n 
N7A C5A NAD sing 350 n y 
C5A C6A NAD sing 351 n y 
C5A C4A NAD doub 352 n y 
C6A N6A NAD sing 353 n n 
C6A N1A NAD doub 354 n y 
N6A H61A NAD sing 355 n n 
N6A H62A NAD sing 356 n n 
N1A C2A NAD sing 357 n y 
C2A N3A NAD doub 358 n y 
C2A H2A NAD sing 359 n n 
N3A C4A NAD sing 360 n y 
O3 PN NAD sing 361 n n 
PN O1N NAD doub 362 n n 
PN O2N NAD sing 363 n n 
PN O5D NAD sing 364 n n 
O5D C5D NAD sing 365 n n 
C5D C4D NAD sing 366 n n 
C5D H51N NAD sing 367 n n 
C5D H52N NAD sing 368 n n 
C4D O4D NAD sing 369 n n 
C4D C3D NAD sing 370 n n 
C4D H4D NAD sing 371 n n 
O4D C1D NAD sing 372 n n 
C3D O3D NAD sing 373 n n 
C3D C2D NAD sing 374 n n 
C3D H3D NAD sing 375 n n 
O3D HO3N NAD sing 376 n n 
C2D O2D NAD sing 377 n n 
C2D C1D NAD sing 378 n n 
C2D H2D NAD sing 379 n n 
O2D HO2N NAD sing 380 n n 
C1D N1N NAD sing 381 n n 
C1D H1D NAD sing 382 n n 
N1N C2N NAD sing 383 n y 
N1N C6N NAD doub 384 n y 
C2N C3N NAD doub 385 n y 
C2N H2N NAD sing 386 n n 
C3N C7N NAD sing 387 n n 
C3N C4N NAD sing 388 n y 
C7N O7N NAD doub 389 n n 
C7N N7N NAD sing 390 n n 
N7N H71N NAD sing 391 n n 
N7N H72N NAD sing 392 n n 
C4N C5N NAD doub 393 n y 
C4N H4N NAD sing 394 n n 
C5N C6N NAD sing 395 n y 
C5N H5N NAD sing 396 n n 
C6N H6N NAD sing 397 n n 
#
_atom_sites.entry_id                     7RFI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GTP A 1 601 601 GTP GTP . 
J 2 GTP A 1 602 602 GTP GTP . 
K 3 IMP A 1 603 603 IMP IMP . 
L 4 NAD A 1 604 604 NAD NAD . 
M 2 GTP B 1 601 601 GTP GTP . 
N 2 GTP B 1 602 602 GTP GTP . 
O 3 IMP B 1 603 603 IMP IMP . 
P 4 NAD B 1 604 604 NAD NAD . 
Q 2 GTP C 1 601 601 GTP GTP . 
R 2 GTP C 1 602 602 GTP GTP . 
S 3 IMP C 1 603 603 IMP IMP . 
T 4 NAD C 1 604 604 NAD NAD . 
U 2 GTP D 1 601 601 GTP GTP . 
V 2 GTP D 1 602 602 GTP GTP . 
W 3 IMP D 1 603 603 IMP IMP . 
X 4 NAD D 1 604 604 NAD NAD . 
Y 2 GTP E 1 601 601 GTP GTP . 
Z 2 GTP E 1 602 602 GTP GTP . 
AA 3 IMP E 1 603 603 IMP IMP . 
BA 4 NAD E 1 604 604 NAD NAD . 
CA 2 GTP F 1 601 601 GTP GTP . 
DA 2 GTP F 1 602 602 GTP GTP . 
EA 3 IMP F 1 603 603 IMP IMP . 
FA 4 NAD F 1 604 604 NAD NAD . 
GA 2 GTP G 1 601 601 GTP GTP . 
HA 2 GTP G 1 602 602 GTP GTP . 
IA 3 IMP G 1 603 603 IMP IMP . 
JA 4 NAD G 1 604 604 NAD NAD . 
KA 2 GTP H 1 601 601 GTP GTP . 
LA 2 GTP H 1 602 602 GTP GTP . 
MA 3 IMP H 1 603 603 IMP IMP . 
NA 4 NAD H 1 604 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . P 4 200.451 154.686 193.804 1 37.34 ? PA NAD 604 B 1 
HETATM 2 O O1A NAD . . . P 4 199.996 154.047 192.557 1 37.34 ? O1A NAD 604 B 1 
HETATM 3 O O2A NAD . . . P 4 201.708 154.177 194.39 1 37.34 ? O2A NAD 604 B 1 
HETATM 4 O O5B NAD . . . P 4 200.684 156.242 193.493 1 37.34 ? O5B NAD 604 B 1 
HETATM 5 C C5B NAD . . . P 4 201.384 157.112 194.367 1 37.34 ? C5B NAD 604 B 1 
HETATM 6 C C4B NAD . . . P 4 202.389 157.976 193.588 1 37.34 ? C4B NAD 604 B 1 
HETATM 7 O O4B NAD . . . P 4 203.556 157.219 193.268 1 37.34 ? O4B NAD 604 B 1 
HETATM 8 C C3B NAD . . . P 4 201.826 158.516 192.268 1 37.34 ? C3B NAD 604 B 1 
HETATM 9 O O3B NAD . . . P 4 202.35 159.819 192.067 1 37.34 ? O3B NAD 604 B 1 
HETATM 10 C C2B NAD . . . P 4 202.381 157.492 191.267 1 37.34 ? C2B NAD 604 B 1 
HETATM 11 O O2B NAD . . . P 4 202.4 157.949 189.924 1 37.34 ? O2B NAD 604 B 1 
HETATM 12 C C1B NAD . . . P 4 203.766 157.246 191.862 1 37.34 ? C1B NAD 604 B 1 
HETATM 13 N N9A NAD . . . P 4 204.433 155.992 191.436 1 37.34 ? N9A NAD 604 B 1 
HETATM 14 C C8A NAD . . . P 4 203.933 154.715 191.369 1 37.34 ? C8A NAD 604 B 1 
HETATM 15 N N7A NAD . . . P 4 204.81 153.808 191.022 1 37.34 ? N7A NAD 604 B 1 
HETATM 16 C C5A NAD . . . P 4 205.978 154.56 190.839 1 37.34 ? C5A NAD 604 B 1 
HETATM 17 C C6A NAD . . . P 4 207.316 154.259 190.484 1 37.34 ? C6A NAD 604 B 1 
HETATM 18 N N6A NAD . . . P 4 207.791 153.059 190.234 1 37.34 ? N6A NAD 604 B 1 
HETATM 19 N N1A NAD . . . P 4 208.238 155.211 190.382 1 37.34 ? N1A NAD 604 B 1 
HETATM 20 C C2A NAD . . . P 4 207.859 156.457 190.611 1 37.34 ? C2A NAD 604 B 1 
HETATM 21 N N3A NAD . . . P 4 206.657 156.89 190.964 1 37.34 ? N3A NAD 604 B 1 
HETATM 22 C C4A NAD . . . P 4 205.752 155.878 191.066 1 37.34 ? C4A NAD 604 B 1 
HETATM 23 O O3 NAD . . . P 4 199.361 154.46 194.921 1 37.34 ? O3 NAD 604 B 1 
HETATM 24 P PN NAD . . . P 4 198.068 155.356 194.85 1 37.34 ? PN NAD 604 B 1 
HETATM 25 O O1N NAD . . . P 4 197.55 155.48 193.48 1 37.34 ? O1N NAD 604 B 1 
HETATM 26 O O2N NAD . . . P 4 198.279 156.573 195.658 1 37.34 ? O2N NAD 604 B 1 
HETATM 27 O O5D NAD . . . P 4 197.003 154.459 195.652 1 37.34 ? O5D NAD 604 B 1 
HETATM 28 C C5D NAD . . . P 4 197.275 154.033 196.978 1 37.34 ? C5D NAD 604 B 1 
HETATM 29 C C4D NAD . . . P 4 196.167 153.15 197.563 1 37.34 ? C4D NAD 604 B 1 
HETATM 30 O O4D NAD . . . P 4 194.959 153.88 197.694 1 37.34 ? O4D NAD 604 B 1 
HETATM 31 C C3D NAD . . . P 4 195.854 151.922 196.708 1 37.34 ? C3D NAD 604 B 1 
HETATM 32 O O3D NAD . . . P 4 195.418 150.878 197.56 1 37.34 ? O3D NAD 604 B 1 
HETATM 33 C C2D NAD . . . P 4 194.726 152.425 195.805 1 37.34 ? C2D NAD 604 B 1 
HETATM 34 O O2D NAD . . . P 4 193.863 151.384 195.341 1 37.34 ? O2D NAD 604 B 1 
HETATM 35 C C1D NAD . . . P 4 194.015 153.431 196.73 1 37.34 ? C1D NAD 604 B 1 
HETATM 36 N N1N NAD . . . P 4 193.372 154.564 195.997 1 37.34 ? N1N NAD 604 B 1 
HETATM 37 C C2N NAD . . . P 4 192.336 154.319 195.147 1 37.34 ? C2N NAD 604 B 1 
HETATM 38 C C3N NAD . . . P 4 191.689 155.365 194.439 1 37.34 ? C3N NAD 604 B 1 
HETATM 39 C C7N NAD . . . P 4 190.598 155.153 193.563 1 37.34 ? C7N NAD 604 B 1 
HETATM 40 O O7N NAD . . . P 4 189.788 156.038 193.328 1 37.34 ? O7N NAD 604 B 1 
HETATM 41 N N7N NAD . . . P 4 190.491 154.002 192.944 1 37.34 ? N7N NAD 604 B 1 
HETATM 42 C C4N NAD . . . P 4 192.114 156.69 194.658 1 37.34 ? C4N NAD 604 B 1 
HETATM 43 C C5N NAD . . . P 4 193.186 156.922 195.529 1 37.34 ? C5N NAD 604 B 1 
HETATM 44 C C6N NAD . . . P 4 193.8 155.844 196.189 1 37.34 ? C6N NAD 604 B 1 
HETATM 45 H H51A NAD . . . P 4 201.914 156.563 195.144 1 37.34 ? H51A NAD 604 B 1 
HETATM 46 H H52A NAD . . . P 4 200.666 157.773 194.853 1 37.34 ? H52A NAD 604 B 1 
HETATM 47 H H4B NAD . . . P 4 202.673 158.814 194.225 1 37.34 ? H4B NAD 604 B 1 
HETATM 48 H H3B NAD . . . P 4 200.736 158.536 192.269 1 37.34 ? H3B NAD 604 B 1 
HETATM 49 H HO3A NAD . . . P 4 201.862 160.253 191.363 1 37.34 ? HO3A NAD 604 B 1 
HETATM 50 H H2B NAD . . . P 4 201.799 156.573 191.331 1 37.34 ? H2B NAD 604 B 1 
HETATM 51 H HO2A NAD . . . P 4 201.559 157.726 189.518 1 37.34 ? HO2A NAD 604 B 1 
HETATM 52 H H1B NAD . . . P 4 204.4 158.095 191.606 1 37.34 ? H1B NAD 604 B 1 
HETATM 53 H H8A NAD . . . P 4 202.906 154.48 191.608 1 37.34 ? H8A NAD 604 B 1 
HETATM 54 H H61A NAD . . . P 4 207.173 152.26 190.231 1 37.34 ? H61A NAD 604 B 1 
HETATM 55 H H62A NAD . . . P 4 208.762 152.984 189.966 1 37.34 ? H62A NAD 604 B 1 
HETATM 56 H H2A NAD . . . P 4 208.624 157.214 190.511 1 37.34 ? H2A NAD 604 B 1 
HETATM 57 H H51N NAD . . . P 4 197.4 154.902 197.624 1 37.34 ? H51N NAD 604 B 1 
HETATM 58 H H52N NAD . . . P 4 198.205 153.465 196.994 1 37.34 ? H52N NAD 604 B 1 
HETATM 59 H H4D NAD . . . P 4 196.499 152.824 198.548 1 37.34 ? H4D NAD 604 B 1 
HETATM 60 H H3D NAD . . . P 4 196.727 151.611 196.134 1 37.34 ? H3D NAD 604 B 1 
HETATM 61 H HO3N NAD . . . P 4 195.702 150.057 197.15 1 37.34 ? HO3N NAD 604 B 1 
HETATM 62 H H2D NAD . . . P 4 195.17 152.942 194.955 1 37.34 ? H2D NAD 604 B 1 
HETATM 63 H HO2N NAD . . . P 4 194.351 150.557 195.327 1 37.34 ? HO2N NAD 604 B 1 
HETATM 64 H H1D NAD . . . P 4 193.243 152.886 197.275 1 37.34 ? H1D NAD 604 B 1 
HETATM 65 H H2N NAD . . . P 4 192.021 153.29 195.054 1 37.34 ? H2N NAD 604 B 1 
HETATM 66 H H71N NAD . . . P 4 189.707 153.888 192.317 1 37.34 ? H71N NAD 604 B 1 
HETATM 67 H H72N NAD . . . P 4 191.146 153.25 193.101 1 37.34 ? H72N NAD 604 B 1 
HETATM 68 H H4N NAD . . . P 4 191.642 157.52 194.154 1 37.34 ? H4N NAD 604 B 1 
HETATM 69 H H5N NAD . . . P 4 193.56 157.927 195.656 1 37.34 ? H5N NAD 604 B 1 
HETATM 70 H H6N NAD . . . P 4 194.646 156.016 196.837 1 37.34 ? H6N NAD 604 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           70 
#