data_7RGD
#
_model_server_result.job_id            AsY-QUbyhNCsNzywZCla7Q 
_model_server_result.datetime_utc      '2024-11-23 11:54:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":603}' 
#
_entry.id    7RGD 
#
_exptl.entry_id    7RGD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 P N N 
? 3 U N N 
? 3 Z N N 
? 3 EA N N 
? 3 JA N N 
? 3 OA N N 
? 3 TA N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7RGD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GTP A 1 601 601 GTP GTP . 
J 2 GTP A 1 602 602 GTP GTP . 
K 3 ATP A 1 603 603 ATP ATP . 
L 4 IMP A 1 604 604 IMP IMP . 
M 5 NAD A 1 605 605 NAD NAD . 
N 2 GTP B 1 601 601 GTP GTP . 
O 2 GTP B 1 602 602 GTP GTP . 
P 3 ATP B 1 603 603 ATP ATP . 
Q 4 IMP B 1 604 604 IMP IMP . 
R 5 NAD B 1 605 605 NAD NAD . 
S 2 GTP C 1 601 601 GTP GTP . 
T 2 GTP C 1 602 602 GTP GTP . 
U 3 ATP C 1 603 603 ATP ATP . 
V 4 IMP C 1 604 604 IMP IMP . 
W 5 NAD C 1 605 605 NAD NAD . 
X 2 GTP D 1 601 601 GTP GTP . 
Y 2 GTP D 1 602 602 GTP GTP . 
Z 3 ATP D 1 603 603 ATP ATP . 
AA 4 IMP D 1 604 604 IMP IMP . 
BA 5 NAD D 1 605 605 NAD NAD . 
CA 2 GTP E 1 601 601 GTP GTP . 
DA 2 GTP E 1 602 602 GTP GTP . 
EA 3 ATP E 1 603 603 ATP ATP . 
FA 4 IMP E 1 604 604 IMP IMP . 
GA 5 NAD E 1 605 605 NAD NAD . 
HA 2 GTP F 1 601 601 GTP GTP . 
IA 2 GTP F 1 602 602 GTP GTP . 
JA 3 ATP F 1 603 603 ATP ATP . 
KA 4 IMP F 1 604 604 IMP IMP . 
LA 5 NAD F 1 605 605 NAD NAD . 
MA 2 GTP G 1 601 601 GTP GTP . 
NA 2 GTP G 1 602 602 GTP GTP . 
OA 3 ATP G 1 603 603 ATP ATP . 
PA 4 IMP G 1 604 604 IMP IMP . 
QA 5 NAD G 1 605 605 NAD NAD . 
RA 2 GTP H 1 601 601 GTP GTP . 
SA 2 GTP H 1 602 602 GTP GTP . 
TA 3 ATP H 1 603 603 ATP ATP . 
UA 4 IMP H 1 604 604 IMP IMP . 
VA 5 NAD H 1 605 605 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . OA 3 226.001 166.061 167.236 1 60.02 ? PG ATP 603 G 1 
HETATM 2 O O1G ATP . . . OA 3 225.013 165.182 166.58 1 60.02 ? O1G ATP 603 G 1 
HETATM 3 O O2G ATP . . . OA 3 226.259 167.203 166.322 1 60.02 ? O2G ATP 603 G 1 
HETATM 4 O O3G ATP . . . OA 3 225.402 166.6 168.473 1 60.02 ? O3G ATP 603 G 1 
HETATM 5 P PB ATP . . . OA 3 227.443 164.012 168.328 1 60.02 ? PB ATP 603 G 1 
HETATM 6 O O1B ATP . . . OA 3 226.727 164.065 169.629 1 60.02 ? O1B ATP 603 G 1 
HETATM 7 O O2B ATP . . . OA 3 227.005 162.802 167.568 1 60.02 ? O2B ATP 603 G 1 
HETATM 8 O O3B ATP . . . OA 3 227.353 165.336 167.5 1 60.02 ? O3B ATP 603 G 1 
HETATM 9 P PA ATP . . . OA 3 229.759 164.292 169.814 1 60.02 ? PA ATP 603 G 1 
HETATM 10 O O1A ATP . . . OA 3 229.452 163.32 170.89 1 60.02 ? O1A ATP 603 G 1 
HETATM 11 O O2A ATP . . . OA 3 229.661 165.688 170.318 1 60.02 ? O2A ATP 603 G 1 
HETATM 12 O O3A ATP . . . OA 3 229.003 164.015 168.477 1 60.02 ? O3A ATP 603 G 1 
HETATM 13 O O5' ATP . . . OA 3 231.235 164.01 169.241 1 60.02 ? O5' ATP 603 G 1 
HETATM 14 C C5' ATP . . . OA 3 231.772 164.821 168.184 1 60.02 ? C5' ATP 603 G 1 
HETATM 15 C C4' ATP . . . OA 3 233.168 164.294 167.745 1 60.02 ? C4' ATP 603 G 1 
HETATM 16 O O4' ATP . . . OA 3 234.013 164.196 168.914 1 60.02 ? O4' ATP 603 G 1 
HETATM 17 C C3' ATP . . . OA 3 233.152 162.879 167.108 1 60.02 ? C3' ATP 603 G 1 
HETATM 18 O O3' ATP . . . OA 3 234.158 162.773 166.1 1 60.02 ? O3' ATP 603 G 1 
HETATM 19 C C2' ATP . . . OA 3 233.493 161.973 168.295 1 60.02 ? C2' ATP 603 G 1 
HETATM 20 O O2' ATP . . . OA 3 234.062 160.708 167.933 1 60.02 ? O2' ATP 603 G 1 
HETATM 21 C C1' ATP . . . OA 3 234.445 162.841 169.129 1 60.02 ? C1' ATP 603 G 1 
HETATM 22 N N9 ATP . . . OA 3 234.43 162.57 170.558 1 60.02 ? N9 ATP 603 G 1 
HETATM 23 C C8 ATP . . . OA 3 233.35 162.222 171.376 1 60.02 ? C8 ATP 603 G 1 
HETATM 24 N N7 ATP . . . OA 3 233.701 162.087 172.665 1 60.02 ? N7 ATP 603 G 1 
HETATM 25 C C5 ATP . . . OA 3 235.029 162.397 172.63 1 60.02 ? C5 ATP 603 G 1 
HETATM 26 C C6 ATP . . . OA 3 235.951 162.447 173.672 1 60.02 ? C6 ATP 603 G 1 
HETATM 27 N N6 ATP . . . OA 3 235.655 162.132 174.943 1 60.02 ? N6 ATP 603 G 1 
HETATM 28 N N1 ATP . . . OA 3 237.204 162.813 173.484 1 60.02 ? N1 ATP 603 G 1 
HETATM 29 C C2 ATP . . . OA 3 237.541 163.098 172.223 1 60.02 ? C2 ATP 603 G 1 
HETATM 30 N N3 ATP . . . OA 3 236.745 163.06 171.148 1 60.02 ? N3 ATP 603 G 1 
HETATM 31 C C4 ATP . . . OA 3 235.485 162.693 171.394 1 60.02 ? C4 ATP 603 G 1 
HETATM 32 H "H5'1" ATP . . . OA 3 231.108 164.815 167.312 1 60.02 ? "H5'1" ATP 603 G 1 
HETATM 33 H "H5'2" ATP . . . OA 3 231.873 165.858 168.525 1 60.02 ? "H5'2" ATP 603 G 1 
HETATM 34 H H4' ATP . . . OA 3 233.594 165.013 167.035 1 60.02 ? H4' ATP 603 G 1 
HETATM 35 H H3' ATP . . . OA 3 232.167 162.642 166.688 1 60.02 ? H3' ATP 603 G 1 
HETATM 36 H HO3' ATP . . . OA 3 234.038 161.884 165.727 1 60.02 ? HO3' ATP 603 G 1 
HETATM 37 H H2' ATP . . . OA 3 232.564 161.805 168.854 1 60.02 ? H2' ATP 603 G 1 
HETATM 38 H HO2' ATP . . . OA 3 233.487 160.321 167.252 1 60.02 ? HO2' ATP 603 G 1 
HETATM 39 H H1' ATP . . . OA 3 235.472 162.722 168.765 1 60.02 ? H1' ATP 603 G 1 
HETATM 40 H H8 ATP . . . OA 3 232.352 162.092 170.982 1 60.02 ? H8 ATP 603 G 1 
HETATM 41 H HN61 ATP . . . OA 3 234.699 162.294 175.231 1 60.02 ? HN61 ATP 603 G 1 
HETATM 42 H HN62 ATP . . . OA 3 236.4 162.22 175.621 1 60.02 ? HN62 ATP 603 G 1 
HETATM 43 H H2 ATP . . . OA 3 238.572 163.396 172.052 1 60.02 ? H2 ATP 603 G 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#