data_7RGD # _model_server_result.job_id rRwiJSudvAmPfDnWj8m-WA _model_server_result.datetime_utc '2024-10-19 01:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":603}' # _entry.id 7RGD # _exptl.entry_id 7RGD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RGD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 P N N ? 3 U N N ? 3 Z N N ? 3 EA N N ? 3 JA N N ? 3 OA N N ? 3 TA N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7RGD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 2 GTP A 1 602 602 GTP GTP . K 3 ATP A 1 603 603 ATP ATP . L 4 IMP A 1 604 604 IMP IMP . M 5 NAD A 1 605 605 NAD NAD . N 2 GTP B 1 601 601 GTP GTP . O 2 GTP B 1 602 602 GTP GTP . P 3 ATP B 1 603 603 ATP ATP . Q 4 IMP B 1 604 604 IMP IMP . R 5 NAD B 1 605 605 NAD NAD . S 2 GTP C 1 601 601 GTP GTP . T 2 GTP C 1 602 602 GTP GTP . U 3 ATP C 1 603 603 ATP ATP . V 4 IMP C 1 604 604 IMP IMP . W 5 NAD C 1 605 605 NAD NAD . X 2 GTP D 1 601 601 GTP GTP . Y 2 GTP D 1 602 602 GTP GTP . Z 3 ATP D 1 603 603 ATP ATP . AA 4 IMP D 1 604 604 IMP IMP . BA 5 NAD D 1 605 605 NAD NAD . CA 2 GTP E 1 601 601 GTP GTP . DA 2 GTP E 1 602 602 GTP GTP . EA 3 ATP E 1 603 603 ATP ATP . FA 4 IMP E 1 604 604 IMP IMP . GA 5 NAD E 1 605 605 NAD NAD . HA 2 GTP F 1 601 601 GTP GTP . IA 2 GTP F 1 602 602 GTP GTP . JA 3 ATP F 1 603 603 ATP ATP . KA 4 IMP F 1 604 604 IMP IMP . LA 5 NAD F 1 605 605 NAD NAD . MA 2 GTP G 1 601 601 GTP GTP . NA 2 GTP G 1 602 602 GTP GTP . OA 3 ATP G 1 603 603 ATP ATP . PA 4 IMP G 1 604 604 IMP IMP . QA 5 NAD G 1 605 605 NAD NAD . RA 2 GTP H 1 601 601 GTP GTP . SA 2 GTP H 1 602 602 GTP GTP . TA 3 ATP H 1 603 603 ATP ATP . UA 4 IMP H 1 604 604 IMP IMP . VA 5 NAD H 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Z 3 165.665 225.962 170.287 1 59.27 ? PG ATP 603 D 1 HETATM 2 O O1G ATP . . . Z 3 166.118 224.99 169.269 1 59.27 ? O1G ATP 603 D 1 HETATM 3 O O2G ATP . . . Z 3 164.416 225.472 170.926 1 59.27 ? O2G ATP 603 D 1 HETATM 4 O O3G ATP . . . Z 3 166.717 226 171.334 1 59.27 ? O3G ATP 603 D 1 HETATM 5 P PB ATP . . . Z 3 164.395 227.799 168.685 1 59.27 ? PB ATP 603 D 1 HETATM 6 O O1B ATP . . . Z 3 164.137 226.733 167.679 1 59.27 ? O1B ATP 603 D 1 HETATM 7 O O2B ATP . . . Z 3 163.153 228.286 169.339 1 59.27 ? O2B ATP 603 D 1 HETATM 8 O O3B ATP . . . Z 3 165.528 227.4 169.699 1 59.27 ? O3B ATP 603 D 1 HETATM 9 P PA ATP . . . Z 3 164.568 230.028 167.105 1 59.27 ? PA ATP 603 D 1 HETATM 10 O O1A ATP . . . Z 3 163.536 229.491 166.188 1 59.27 ? O1A ATP 603 D 1 HETATM 11 O O2A ATP . . . Z 3 165.646 230.666 166.294 1 59.27 ? O2A ATP 603 D 1 HETATM 12 O O3A ATP . . . Z 3 165.225 228.958 168.026 1 59.27 ? O3A ATP 603 D 1 HETATM 13 O O5' ATP . . . Z 3 163.964 231.04 168.197 1 59.27 ? O5' ATP 603 D 1 HETATM 14 C C5' ATP . . . Z 3 164.823 231.765 169.089 1 59.27 ? C5' ATP 603 D 1 HETATM 15 C C4' ATP . . . Z 3 164.191 233.135 169.444 1 59.27 ? C4' ATP 603 D 1 HETATM 16 O O4' ATP . . . Z 3 164.083 233.906 168.229 1 59.27 ? O4' ATP 603 D 1 HETATM 17 C C3' ATP . . . Z 3 162.754 233.058 170.028 1 59.27 ? C3' ATP 603 D 1 HETATM 18 O O3' ATP . . . Z 3 162.58 234.062 171.023 1 59.27 ? O3' ATP 603 D 1 HETATM 19 C C2' ATP . . . Z 3 161.869 233.371 168.819 1 59.27 ? C2' ATP 603 D 1 HETATM 20 O O2' ATP . . . Z 3 160.581 233.908 169.151 1 59.27 ? O2' ATP 603 D 1 HETATM 21 C C1' ATP . . . Z 3 162.737 234.346 168.012 1 59.27 ? C1' ATP 603 D 1 HETATM 22 N N9 ATP . . . Z 3 162.487 234.352 166.58 1 59.27 ? N9 ATP 603 D 1 HETATM 23 C C8 ATP . . . Z 3 162.176 233.282 165.738 1 59.27 ? C8 ATP 603 D 1 HETATM 24 N N7 ATP . . . Z 3 162.069 233.652 164.451 1 59.27 ? N7 ATP 603 D 1 HETATM 25 C C5 ATP . . . Z 3 162.369 234.981 164.514 1 59.27 ? C5 ATP 603 D 1 HETATM 26 C C6 ATP . . . Z 3 162.426 235.92 163.489 1 59.27 ? C6 ATP 603 D 1 HETATM 27 N N6 ATP . . . Z 3 162.144 235.637 162.207 1 59.27 ? N6 ATP 603 D 1 HETATM 28 N N1 ATP . . . Z 3 162.761 237.178 163.707 1 59.27 ? N1 ATP 603 D 1 HETATM 29 C C2 ATP . . . Z 3 163.019 237.496 164.978 1 59.27 ? C2 ATP 603 D 1 HETATM 30 N N3 ATP . . . Z 3 162.98 236.678 166.038 1 59.27 ? N3 ATP 603 D 1 HETATM 31 C C4 ATP . . . Z 3 162.634 235.418 165.764 1 59.27 ? C4 ATP 603 D 1 HETATM 32 H "H5'1" ATP . . . Z 3 165.802 231.941 168.628 1 59.27 ? "H5'1" ATP 603 D 1 HETATM 33 H "H5'2" ATP . . . Z 3 164.983 231.186 170.006 1 59.27 ? "H5'2" ATP 603 D 1 HETATM 34 H H4' ATP . . . Z 3 164.85 233.648 170.154 1 59.27 ? H4' ATP 603 D 1 HETATM 35 H H3' ATP . . . Z 3 162.529 232.067 170.439 1 59.27 ? H3' ATP 603 D 1 HETATM 36 H HO3' ATP . . . Z 3 161.644 233.977 171.272 1 59.27 ? HO3' ATP 603 D 1 HETATM 37 H H2' ATP . . . Z 3 161.742 232.44 168.253 1 59.27 ? H2' ATP 603 D 1 HETATM 38 H HO2' ATP . . . Z 3 160.404 233.684 170.081 1 59.27 ? HO2' ATP 603 D 1 HETATM 39 H H1' ATP . . . Z 3 162.613 235.365 168.392 1 59.27 ? H1' ATP 603 D 1 HETATM 40 H H8 ATP . . . Z 3 162.042 232.277 166.115 1 59.27 ? H8 ATP 603 D 1 HETATM 41 H HN61 ATP . . . Z 3 162.353 234.695 161.906 1 59.27 ? HN61 ATP 603 D 1 HETATM 42 H HN62 ATP . . . Z 3 162.226 236.394 161.544 1 59.27 ? HN62 ATP 603 D 1 HETATM 43 H H2 ATP . . . Z 3 163.296 238.529 165.172 1 59.27 ? H2 ATP 603 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #