data_7RGD
#
_model_server_result.job_id            xWpmUBck2pA6vmc6BWmuyg 
_model_server_result.datetime_utc      '2024-11-23 11:55:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"PA","auth_seq_id":604}' 
#
_entry.id    7RGD 
#
_exptl.entry_id    7RGD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 Q N N 
? 4 V N N 
? 4 AA N N 
? 4 FA N N 
? 4 KA N N 
? 4 PA N N 
? 4 UA N N 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 270 n n 
P O2P IMP sing 271 n n 
P O3P IMP sing 272 n n 
P O5' IMP sing 273 n n 
O2P HOP2 IMP sing 274 n n 
O3P HOP3 IMP sing 275 n n 
O5' C5' IMP sing 276 n n 
C5' C4' IMP sing 277 n n 
C5' "H5'1" IMP sing 278 n n 
C5' "H5'2" IMP sing 279 n n 
C4' O4' IMP sing 280 n n 
C4' C3' IMP sing 281 n n 
C4' H4' IMP sing 282 n n 
O4' C1' IMP sing 283 n n 
C3' O3' IMP sing 284 n n 
C3' C2' IMP sing 285 n n 
C3' H3' IMP sing 286 n n 
O3' HO3' IMP sing 287 n n 
C2' O2' IMP sing 288 n n 
C2' C1' IMP sing 289 n n 
C2' H2' IMP sing 290 n n 
O2' HO2' IMP sing 291 n n 
C1' N9 IMP sing 292 n n 
C1' H1' IMP sing 293 n n 
N9 C8 IMP sing 294 n y 
N9 C4 IMP sing 295 n y 
C8 N7 IMP doub 296 n y 
C8 H8 IMP sing 297 n n 
N7 C5 IMP sing 298 n y 
C5 C6 IMP sing 299 n n 
C5 C4 IMP doub 300 n y 
C6 O6 IMP doub 301 n n 
C6 N1 IMP sing 302 n n 
N1 C2 IMP sing 303 n n 
N1 HN1 IMP sing 304 n n 
C2 N3 IMP doub 305 n n 
C2 H2 IMP sing 306 n n 
N3 C4 IMP sing 307 n n 
#
_atom_sites.entry_id                     7RGD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GTP A 1 601 601 GTP GTP . 
J 2 GTP A 1 602 602 GTP GTP . 
K 3 ATP A 1 603 603 ATP ATP . 
L 4 IMP A 1 604 604 IMP IMP . 
M 5 NAD A 1 605 605 NAD NAD . 
N 2 GTP B 1 601 601 GTP GTP . 
O 2 GTP B 1 602 602 GTP GTP . 
P 3 ATP B 1 603 603 ATP ATP . 
Q 4 IMP B 1 604 604 IMP IMP . 
R 5 NAD B 1 605 605 NAD NAD . 
S 2 GTP C 1 601 601 GTP GTP . 
T 2 GTP C 1 602 602 GTP GTP . 
U 3 ATP C 1 603 603 ATP ATP . 
V 4 IMP C 1 604 604 IMP IMP . 
W 5 NAD C 1 605 605 NAD NAD . 
X 2 GTP D 1 601 601 GTP GTP . 
Y 2 GTP D 1 602 602 GTP GTP . 
Z 3 ATP D 1 603 603 ATP ATP . 
AA 4 IMP D 1 604 604 IMP IMP . 
BA 5 NAD D 1 605 605 NAD NAD . 
CA 2 GTP E 1 601 601 GTP GTP . 
DA 2 GTP E 1 602 602 GTP GTP . 
EA 3 ATP E 1 603 603 ATP ATP . 
FA 4 IMP E 1 604 604 IMP IMP . 
GA 5 NAD E 1 605 605 NAD NAD . 
HA 2 GTP F 1 601 601 GTP GTP . 
IA 2 GTP F 1 602 602 GTP GTP . 
JA 3 ATP F 1 603 603 ATP ATP . 
KA 4 IMP F 1 604 604 IMP IMP . 
LA 5 NAD F 1 605 605 NAD NAD . 
MA 2 GTP G 1 601 601 GTP GTP . 
NA 2 GTP G 1 602 602 GTP GTP . 
OA 3 ATP G 1 603 603 ATP ATP . 
PA 4 IMP G 1 604 604 IMP IMP . 
QA 5 NAD G 1 605 605 NAD NAD . 
RA 2 GTP H 1 601 601 GTP GTP . 
SA 2 GTP H 1 602 602 GTP GTP . 
TA 3 ATP H 1 603 603 ATP ATP . 
UA 4 IMP H 1 604 604 IMP IMP . 
VA 5 NAD H 1 605 605 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . PA 4 189.671 159.389 185.709 1 37.68 ? P IMP 604 G 1 
HETATM 2 O O1P IMP . . . PA 4 189.507 159.177 184.249 1 37.68 ? O1P IMP 604 G 1 
HETATM 3 O O2P IMP . . . PA 4 188.499 160.165 186.169 1 37.68 ? O2P IMP 604 G 1 
HETATM 4 O O3P IMP . . . PA 4 190.903 160.173 185.947 1 37.68 ? O3P IMP 604 G 1 
HETATM 5 O O5' IMP . . . PA 4 189.705 158.01 186.508 1 37.68 ? O5' IMP 604 G 1 
HETATM 6 C C5' IMP . . . PA 4 190.841 157.154 186.414 1 37.68 ? C5' IMP 604 G 1 
HETATM 7 C C4' IMP . . . PA 4 190.672 156.013 187.445 1 37.68 ? C4' IMP 604 G 1 
HETATM 8 O O4' IMP . . . PA 4 189.619 155.121 187.032 1 37.68 ? O4' IMP 604 G 1 
HETATM 9 C C3' IMP . . . PA 4 191.83 155.031 187.504 1 37.68 ? C3' IMP 604 G 1 
HETATM 10 O O3' IMP . . . PA 4 193.017 155.504 188.108 1 37.68 ? O3' IMP 604 G 1 
HETATM 11 C C2' IMP . . . PA 4 191.216 153.828 188.231 1 37.68 ? C2' IMP 604 G 1 
HETATM 12 O O2' IMP . . . PA 4 191.113 154.032 189.638 1 37.68 ? O2' IMP 604 G 1 
HETATM 13 C C1' IMP . . . PA 4 189.788 153.825 187.657 1 37.68 ? C1' IMP 604 G 1 
HETATM 14 N N9 IMP . . . PA 4 189.577 152.789 186.659 1 37.68 ? N9 IMP 604 G 1 
HETATM 15 C C8 IMP . . . PA 4 190.421 152.428 185.635 1 37.68 ? C8 IMP 604 G 1 
HETATM 16 N N7 IMP . . . PA 4 189.876 151.526 184.836 1 37.68 ? N7 IMP 604 G 1 
HETATM 17 C C5 IMP . . . PA 4 188.623 151.3 185.356 1 37.68 ? C5 IMP 604 G 1 
HETATM 18 C C6 IMP . . . PA 4 187.535 150.461 184.831 1 37.68 ? C6 IMP 604 G 1 
HETATM 19 O O6 IMP . . . PA 4 187.538 149.846 183.783 1 37.68 ? O6 IMP 604 G 1 
HETATM 20 N N1 IMP . . . PA 4 186.475 150.427 185.658 1 37.68 ? N1 IMP 604 G 1 
HETATM 21 C C2 IMP . . . PA 4 186.43 151.071 186.863 1 37.68 ? C2 IMP 604 G 1 
HETATM 22 N N3 IMP . . . PA 4 187.362 151.909 187.307 1 37.68 ? N3 IMP 604 G 1 
HETATM 23 C C4 IMP . . . PA 4 188.474 152.015 186.497 1 37.68 ? C4 IMP 604 G 1 
HETATM 24 H "H5'1" IMP . . . PA 4 190.917 156.742 185.4 1 37.68 ? "H5'1" IMP 604 G 1 
HETATM 25 H "H5'2" IMP . . . PA 4 191.762 157.706 186.637 1 37.68 ? "H5'2" IMP 604 G 1 
HETATM 26 H H4' IMP . . . PA 4 190.476 156.423 188.443 1 37.68 ? H4' IMP 604 G 1 
HETATM 27 H H3' IMP . . . PA 4 192.062 154.734 186.474 1 37.68 ? H3' IMP 604 G 1 
HETATM 28 H HO3' IMP . . . PA 4 192.814 156.089 188.858 1 37.68 ? HO3' IMP 604 G 1 
HETATM 29 H H2' IMP . . . PA 4 191.762 152.903 188.009 1 37.68 ? H2' IMP 604 G 1 
HETATM 30 H HO2' IMP . . . PA 4 191.881 154.532 189.962 1 37.68 ? HO2' IMP 604 G 1 
HETATM 31 H H1' IMP . . . PA 4 189.047 153.682 188.452 1 37.68 ? H1' IMP 604 G 1 
HETATM 32 H H8 IMP . . . PA 4 191.415 152.841 185.532 1 37.68 ? H8 IMP 604 G 1 
HETATM 33 H HN1 IMP . . . PA 4 185.671 149.907 185.328 1 37.68 ? HN1 IMP 604 G 1 
HETATM 34 H H2 IMP . . . PA 4 185.552 150.811 187.439 1 37.68 ? H2 IMP 604 G 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           34 
#