data_7RGI # _model_server_result.job_id jOkqD6s3uYCmkshUEGXHXw _model_server_result.datetime_utc '2024-12-27 02:16:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":600}' # _entry.id 7RGI # _exptl.entry_id 7RGI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RGI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 273 n n PA O2A NAD sing 274 n n PA O5B NAD sing 275 n n PA O3 NAD sing 276 n n O2A HOA2 NAD sing 277 n n O5B C5B NAD sing 278 n n C5B C4B NAD sing 279 n n C5B H51A NAD sing 280 n n C5B H52A NAD sing 281 n n C4B O4B NAD sing 282 n n C4B C3B NAD sing 283 n n C4B H4B NAD sing 284 n n O4B C1B NAD sing 285 n n C3B O3B NAD sing 286 n n C3B C2B NAD sing 287 n n C3B H3B NAD sing 288 n n O3B HO3A NAD sing 289 n n C2B O2B NAD sing 290 n n C2B C1B NAD sing 291 n n C2B H2B NAD sing 292 n n O2B HO2A NAD sing 293 n n C1B N9A NAD sing 294 n n C1B H1B NAD sing 295 n n N9A C8A NAD sing 296 n y N9A C4A NAD sing 297 n y C8A N7A NAD doub 298 n y C8A H8A NAD sing 299 n n N7A C5A NAD sing 300 n y C5A C6A NAD sing 301 n y C5A C4A NAD doub 302 n y C6A N6A NAD sing 303 n n C6A N1A NAD doub 304 n y N6A H61A NAD sing 305 n n N6A H62A NAD sing 306 n n N1A C2A NAD sing 307 n y C2A N3A NAD doub 308 n y C2A H2A NAD sing 309 n n N3A C4A NAD sing 310 n y O3 PN NAD sing 311 n n PN O1N NAD doub 312 n n PN O2N NAD sing 313 n n PN O5D NAD sing 314 n n O5D C5D NAD sing 315 n n C5D C4D NAD sing 316 n n C5D H51N NAD sing 317 n n C5D H52N NAD sing 318 n n C4D O4D NAD sing 319 n n C4D C3D NAD sing 320 n n C4D H4D NAD sing 321 n n O4D C1D NAD sing 322 n n C3D O3D NAD sing 323 n n C3D C2D NAD sing 324 n n C3D H3D NAD sing 325 n n O3D HO3N NAD sing 326 n n C2D O2D NAD sing 327 n n C2D C1D NAD sing 328 n n C2D H2D NAD sing 329 n n O2D HO2N NAD sing 330 n n C1D N1N NAD sing 331 n n C1D H1D NAD sing 332 n n N1N C2N NAD sing 333 n y N1N C6N NAD doub 334 n y C2N C3N NAD doub 335 n y C2N H2N NAD sing 336 n n C3N C7N NAD sing 337 n n C3N C4N NAD sing 338 n y C7N O7N NAD doub 339 n n C7N N7N NAD sing 340 n n N7N H71N NAD sing 341 n n N7N H72N NAD sing 342 n n C4N C5N NAD doub 343 n y C4N H4N NAD sing 344 n n C5N C6N NAD sing 345 n y C5N H5N NAD sing 346 n n C6N H6N NAD sing 347 n n # _atom_sites.entry_id 7RGI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 600 600 NAD NAD . J 3 IMP A 1 601 601 IMP IMP . K 2 NAD B 1 600 600 NAD NAD . L 3 IMP B 1 601 601 IMP IMP . M 2 NAD C 1 600 600 NAD NAD . N 3 IMP C 1 601 601 IMP IMP . O 2 NAD D 1 600 600 NAD NAD . P 3 IMP D 1 601 601 IMP IMP . Q 2 NAD E 1 600 600 NAD NAD . R 3 IMP E 1 601 601 IMP IMP . S 2 NAD F 1 600 600 NAD NAD . T 3 IMP F 1 601 601 IMP IMP . U 2 NAD G 1 600 600 NAD NAD . V 3 IMP G 1 601 601 IMP IMP . W 2 NAD H 1 600 600 NAD NAD . X 3 IMP H 1 601 601 IMP IMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . I 2 161.084 209.114 159.271 1 59.45 ? PA NAD 600 A 1 HETATM 2 O O1A NAD . . . I 2 159.864 208.43 159.742 1 59.45 ? O1A NAD 600 A 1 HETATM 3 O O2A NAD . . . I 2 161.11 209.711 157.919 1 59.45 ? O2A NAD 600 A 1 HETATM 4 O O5B NAD . . . I 2 161.311 210.35 160.268 1 59.45 ? O5B NAD 600 A 1 HETATM 5 C C5B NAD . . . I 2 162.387 211.252 160.071 1 59.45 ? C5B NAD 600 A 1 HETATM 6 C C4B NAD . . . I 2 162.495 212.252 161.222 1 59.45 ? C4B NAD 600 A 1 HETATM 7 O O4B NAD . . . I 2 161.336 213.075 161.243 1 59.45 ? O4B NAD 600 A 1 HETATM 8 C C3B NAD . . . I 2 162.602 211.543 162.578 1 59.45 ? C3B NAD 600 A 1 HETATM 9 O O3B NAD . . . I 2 163.406 212.293 163.48 1 59.45 ? O3B NAD 600 A 1 HETATM 10 C C2B NAD . . . I 2 161.155 211.584 163.064 1 59.45 ? C2B NAD 600 A 1 HETATM 11 O O2B NAD . . . I 2 161.086 211.527 164.48 1 59.45 ? O2B NAD 600 A 1 HETATM 12 C C1B NAD . . . I 2 160.714 212.937 162.507 1 59.45 ? C1B NAD 600 A 1 HETATM 13 N N9A NAD . . . I 2 159.247 213.099 162.419 1 59.45 ? N9A NAD 600 A 1 HETATM 14 C C8A NAD . . . I 2 158.277 212.156 162.191 1 59.45 ? C8A NAD 600 A 1 HETATM 15 N N7A NAD . . . I 2 157.058 212.604 162.323 1 59.45 ? N7A NAD 600 A 1 HETATM 16 C C5A NAD . . . I 2 157.251 213.948 162.668 1 59.45 ? C5A NAD 600 A 1 HETATM 17 C C6A NAD . . . I 2 156.395 215.032 162.98 1 59.45 ? C6A NAD 600 A 1 HETATM 18 N N6A NAD . . . I 2 155.081 214.972 163.027 1 59.45 ? N6A NAD 600 A 1 HETATM 19 N N1A NAD . . . I 2 156.882 216.238 163.269 1 59.45 ? N1A NAD 600 A 1 HETATM 20 C C2A NAD . . . I 2 158.2 216.383 163.275 1 59.45 ? C2A NAD 600 A 1 HETATM 21 N N3A NAD . . . I 2 159.122 215.464 163.014 1 59.45 ? N3A NAD 600 A 1 HETATM 22 C C4A NAD . . . I 2 158.57 214.257 162.713 1 59.45 ? C4A NAD 600 A 1 HETATM 23 O O3 NAD . . . I 2 162.382 208.281 159.61 1 59.45 ? O3 NAD 600 A 1 HETATM 24 P PN NAD . . . I 2 162.616 206.976 158.755 1 59.45 ? PN NAD 600 A 1 HETATM 25 O O1N NAD . . . I 2 161.572 205.97 159.035 1 59.45 ? O1N NAD 600 A 1 HETATM 26 O O2N NAD . . . I 2 164.013 206.572 159.027 1 59.45 ? O2N NAD 600 A 1 HETATM 27 O O5D NAD . . . I 2 162.553 207.424 157.215 1 59.45 ? O5D NAD 600 A 1 HETATM 28 C C5D NAD . . . I 2 163.172 206.717 156.16 1 59.45 ? C5D NAD 600 A 1 HETATM 29 C C4D NAD . . . I 2 162.207 205.726 155.503 1 59.45 ? C4D NAD 600 A 1 HETATM 30 O O4D NAD . . . I 2 162.219 204.508 156.226 1 59.45 ? O4D NAD 600 A 1 HETATM 31 C C3D NAD . . . I 2 160.732 206.188 155.421 1 59.45 ? C3D NAD 600 A 1 HETATM 32 O O3D NAD . . . I 2 160.279 206.165 154.075 1 59.45 ? O3D NAD 600 A 1 HETATM 33 C C2D NAD . . . I 2 159.973 205.126 156.236 1 59.45 ? C2D NAD 600 A 1 HETATM 34 O O2D NAD . . . I 2 158.654 204.869 155.744 1 59.45 ? O2D NAD 600 A 1 HETATM 35 C C1D NAD . . . I 2 160.935 203.951 156.063 1 59.45 ? C1D NAD 600 A 1 HETATM 36 N N1N NAD . . . I 2 160.674 202.821 156.984 1 59.45 ? N1N NAD 600 A 1 HETATM 37 C C2N NAD . . . I 2 159.966 201.773 156.51 1 59.45 ? C2N NAD 600 A 1 HETATM 38 C C3N NAD . . . I 2 159.813 200.59 157.256 1 59.45 ? C3N NAD 600 A 1 HETATM 39 C C7N NAD . . . I 2 159.057 199.52 156.742 1 59.45 ? C7N NAD 600 A 1 HETATM 40 O O7N NAD . . . I 2 158.393 198.791 157.46 1 59.45 ? O7N NAD 600 A 1 HETATM 41 N N7N NAD . . . I 2 159.087 199.313 155.448 1 59.45 ? N7N NAD 600 A 1 HETATM 42 C C4N NAD . . . I 2 160.367 200.527 158.548 1 59.45 ? C4N NAD 600 A 1 HETATM 43 C C5N NAD . . . I 2 161.084 201.632 159.031 1 59.45 ? C5N NAD 600 A 1 HETATM 44 C C6N NAD . . . I 2 161.217 202.778 158.227 1 59.45 ? C6N NAD 600 A 1 HETATM 45 H H51A NAD . . . I 2 163.325 210.702 159.996 1 59.45 ? H51A NAD 600 A 1 HETATM 46 H H52A NAD . . . I 2 162.242 211.804 159.142 1 59.45 ? H52A NAD 600 A 1 HETATM 47 H H4B NAD . . . I 2 163.378 212.869 161.063 1 59.45 ? H4B NAD 600 A 1 HETATM 48 H H3B NAD . . . I 2 162.96 210.519 162.48 1 59.45 ? H3B NAD 600 A 1 HETATM 49 H HO3A NAD . . . I 2 164.325 212.03 163.403 1 59.45 ? HO3A NAD 600 A 1 HETATM 50 H H2B NAD . . . I 2 160.589 210.769 162.613 1 59.45 ? H2B NAD 600 A 1 HETATM 51 H HO2A NAD . . . I 2 161.949 211.819 164.778 1 59.45 ? HO2A NAD 600 A 1 HETATM 52 H H1B NAD . . . I 2 161.102 213.713 163.166 1 59.45 ? H1B NAD 600 A 1 HETATM 53 H H8A NAD . . . I 2 158.505 211.135 161.926 1 59.45 ? H8A NAD 600 A 1 HETATM 54 H H61A NAD . . . I 2 154.624 214.085 162.867 1 59.45 ? H61A NAD 600 A 1 HETATM 55 H H62A NAD . . . I 2 154.574 215.8 163.304 1 59.45 ? H62A NAD 600 A 1 HETATM 56 H H2A NAD . . . I 2 158.567 217.369 163.52 1 59.45 ? H2A NAD 600 A 1 HETATM 57 H H51N NAD . . . I 2 164.06 206.188 156.504 1 59.45 ? H51N NAD 600 A 1 HETATM 58 H H52N NAD . . . I 2 163.484 207.438 155.405 1 59.45 ? H52N NAD 600 A 1 HETATM 59 H H4D NAD . . . I 2 162.568 205.529 154.494 1 59.45 ? H4D NAD 600 A 1 HETATM 60 H H3D NAD . . . I 2 160.58 207.178 155.849 1 59.45 ? H3D NAD 600 A 1 HETATM 61 H HO3N NAD . . . I 2 159.341 205.969 154.127 1 59.45 ? HO3N NAD 600 A 1 HETATM 62 H H2D NAD . . . I 2 159.941 205.429 157.282 1 59.45 ? H2D NAD 600 A 1 HETATM 63 H HO2N NAD . . . I 2 158.206 204.249 156.322 1 59.45 ? HO2N NAD 600 A 1 HETATM 64 H H1D NAD . . . I 2 160.853 203.596 155.035 1 59.45 ? H1D NAD 600 A 1 HETATM 65 H H2N NAD . . . I 2 159.51 201.895 155.539 1 59.45 ? H2N NAD 600 A 1 HETATM 66 H H71N NAD . . . I 2 159.633 199.908 154.842 1 59.45 ? H71N NAD 600 A 1 HETATM 67 H H72N NAD . . . I 2 158.334 198.751 155.078 1 59.45 ? H72N NAD 600 A 1 HETATM 68 H H4N NAD . . . I 2 160.246 199.651 159.167 1 59.45 ? H4N NAD 600 A 1 HETATM 69 H H5N NAD . . . I 2 161.517 201.597 160.02 1 59.45 ? H5N NAD 600 A 1 HETATM 70 H H6N NAD . . . I 2 161.769 203.643 158.56 1 59.45 ? H6N NAD 600 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 103 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 70 #