data_7RGI
#
_model_server_result.job_id            mj-TJgfckLnBxLXNX5xvQA 
_model_server_result.datetime_utc      '2024-12-27 02:39:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":600}' 
#
_entry.id    7RGI 
#
_exptl.entry_id    7RGI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 273 n n 
PA O2A NAD sing 274 n n 
PA O5B NAD sing 275 n n 
PA O3 NAD sing 276 n n 
O2A HOA2 NAD sing 277 n n 
O5B C5B NAD sing 278 n n 
C5B C4B NAD sing 279 n n 
C5B H51A NAD sing 280 n n 
C5B H52A NAD sing 281 n n 
C4B O4B NAD sing 282 n n 
C4B C3B NAD sing 283 n n 
C4B H4B NAD sing 284 n n 
O4B C1B NAD sing 285 n n 
C3B O3B NAD sing 286 n n 
C3B C2B NAD sing 287 n n 
C3B H3B NAD sing 288 n n 
O3B HO3A NAD sing 289 n n 
C2B O2B NAD sing 290 n n 
C2B C1B NAD sing 291 n n 
C2B H2B NAD sing 292 n n 
O2B HO2A NAD sing 293 n n 
C1B N9A NAD sing 294 n n 
C1B H1B NAD sing 295 n n 
N9A C8A NAD sing 296 n y 
N9A C4A NAD sing 297 n y 
C8A N7A NAD doub 298 n y 
C8A H8A NAD sing 299 n n 
N7A C5A NAD sing 300 n y 
C5A C6A NAD sing 301 n y 
C5A C4A NAD doub 302 n y 
C6A N6A NAD sing 303 n n 
C6A N1A NAD doub 304 n y 
N6A H61A NAD sing 305 n n 
N6A H62A NAD sing 306 n n 
N1A C2A NAD sing 307 n y 
C2A N3A NAD doub 308 n y 
C2A H2A NAD sing 309 n n 
N3A C4A NAD sing 310 n y 
O3 PN NAD sing 311 n n 
PN O1N NAD doub 312 n n 
PN O2N NAD sing 313 n n 
PN O5D NAD sing 314 n n 
O5D C5D NAD sing 315 n n 
C5D C4D NAD sing 316 n n 
C5D H51N NAD sing 317 n n 
C5D H52N NAD sing 318 n n 
C4D O4D NAD sing 319 n n 
C4D C3D NAD sing 320 n n 
C4D H4D NAD sing 321 n n 
O4D C1D NAD sing 322 n n 
C3D O3D NAD sing 323 n n 
C3D C2D NAD sing 324 n n 
C3D H3D NAD sing 325 n n 
O3D HO3N NAD sing 326 n n 
C2D O2D NAD sing 327 n n 
C2D C1D NAD sing 328 n n 
C2D H2D NAD sing 329 n n 
O2D HO2N NAD sing 330 n n 
C1D N1N NAD sing 331 n n 
C1D H1D NAD sing 332 n n 
N1N C2N NAD sing 333 n y 
N1N C6N NAD doub 334 n y 
C2N C3N NAD doub 335 n y 
C2N H2N NAD sing 336 n n 
C3N C7N NAD sing 337 n n 
C3N C4N NAD sing 338 n y 
C7N O7N NAD doub 339 n n 
C7N N7N NAD sing 340 n n 
N7N H71N NAD sing 341 n n 
N7N H72N NAD sing 342 n n 
C4N C5N NAD doub 343 n y 
C4N H4N NAD sing 344 n n 
C5N C6N NAD sing 345 n y 
C5N H5N NAD sing 346 n n 
C6N H6N NAD sing 347 n n 
#
_atom_sites.entry_id                     7RGI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAD A 1 600 600 NAD NAD . 
J 3 IMP A 1 601 601 IMP IMP . 
K 2 NAD B 1 600 600 NAD NAD . 
L 3 IMP B 1 601 601 IMP IMP . 
M 2 NAD C 1 600 600 NAD NAD . 
N 3 IMP C 1 601 601 IMP IMP . 
O 2 NAD D 1 600 600 NAD NAD . 
P 3 IMP D 1 601 601 IMP IMP . 
Q 2 NAD E 1 600 600 NAD NAD . 
R 3 IMP E 1 601 601 IMP IMP . 
S 2 NAD F 1 600 600 NAD NAD . 
T 3 IMP F 1 601 601 IMP IMP . 
U 2 NAD G 1 600 600 NAD NAD . 
V 3 IMP G 1 601 601 IMP IMP . 
W 2 NAD H 1 600 600 NAD NAD . 
X 3 IMP H 1 601 601 IMP IMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . S 2 161.809 210.043 212.377 1 59.45 ? PA NAD 600 F 1 
HETATM 2 O O1A NAD . . . S 2 162.388 211.265 211.786 1 59.45 ? O1A NAD 600 F 1 
HETATM 3 O O2A NAD . . . S 2 161.428 210.037 213.805 1 59.45 ? O2A NAD 600 F 1 
HETATM 4 O O5B NAD . . . S 2 160.463 209.756 211.552 1 59.45 ? O5B NAD 600 F 1 
HETATM 5 C C5B NAD . . . S 2 159.588 208.711 211.936 1 59.45 ? C5B NAD 600 F 1 
HETATM 6 C C4B NAD . . . S 2 158.578 208.365 210.84 1 59.45 ? C4B NAD 600 F 1 
HETATM 7 O O4B NAD . . . S 2 157.786 209.495 210.505 1 59.45 ? O4B NAD 600 F 1 
HETATM 8 C C3B NAD . . . S 2 159.242 207.861 209.557 1 59.45 ? C3B NAD 600 F 1 
HETATM 9 O O3B NAD . . . S 2 158.396 206.865 209.012 1 59.45 ? O3B NAD 600 F 1 
HETATM 10 C C2B NAD . . . S 2 159.29 209.12 208.693 1 59.45 ? C2B NAD 600 F 1 
HETATM 11 O O2B NAD . . . S 2 159.258 208.818 207.302 1 59.45 ? O2B NAD 600 F 1 
HETATM 12 C C1B NAD . . . S 2 158.027 209.846 209.154 1 59.45 ? C1B NAD 600 F 1 
HETATM 13 N N9A NAD . . . S 2 158.097 211.319 209.057 1 59.45 ? N9A NAD 600 F 1 
HETATM 14 C C8A NAD . . . S 2 159.097 212.17 209.454 1 59.45 ? C8A NAD 600 F 1 
HETATM 15 N N7A NAD . . . S 2 158.815 213.435 209.28 1 59.45 ? N7A NAD 600 F 1 
HETATM 16 C C5A NAD . . . S 2 157.532 213.407 208.719 1 59.45 ? C5A NAD 600 F 1 
HETATM 17 C C6A NAD . . . S 2 156.607 214.384 208.28 1 59.45 ? C6A NAD 600 F 1 
HETATM 18 N N6A NAD . . . S 2 156.797 215.69 208.274 1 59.45 ? N6A NAD 600 F 1 
HETATM 19 N N1A NAD . . . S 2 155.406 214.039 207.818 1 59.45 ? N1A NAD 600 F 1 
HETATM 20 C C2A NAD . . . S 2 155.12 212.747 207.754 1 59.45 ? C2A NAD 600 F 1 
HETATM 21 N N3A NAD . . . S 2 155.884 211.725 208.114 1 59.45 ? N3A NAD 600 F 1 
HETATM 22 C C4A NAD . . . S 2 157.09 212.13 208.593 1 59.45 ? C4A NAD 600 F 1 
HETATM 23 O O3 NAD . . . S 2 162.597 208.721 212.023 1 59.45 ? O3 NAD 600 F 1 
HETATM 24 P PN NAD . . . S 2 164.154 208.739 212.255 1 59.45 ? PN NAD 600 F 1 
HETATM 25 O O1N NAD . . . S 2 164.777 209.674 211.315 1 59.45 ? O1N NAD 600 F 1 
HETATM 26 O O2N NAD . . . S 2 164.634 207.343 212.168 1 59.45 ? O2N NAD 600 F 1 
HETATM 27 O O5D NAD . . . S 2 164.531 209.252 213.723 1 59.45 ? O5D NAD 600 F 1 
HETATM 28 C C5D NAD . . . S 2 164.237 208.513 214.89 1 59.45 ? C5D NAD 600 F 1 
HETATM 29 C C4D NAD . . . S 2 164.906 209.187 216.098 1 59.45 ? C4D NAD 600 F 1 
HETATM 30 O O4D NAD . . . S 2 166.32 209.157 215.912 1 59.45 ? O4D NAD 600 F 1 
HETATM 31 C C3D NAD . . . S 2 164.496 210.659 216.264 1 59.45 ? C3D NAD 600 F 1 
HETATM 32 O O3D NAD . . . S 2 164.495 211.031 217.636 1 59.45 ? O3D NAD 600 F 1 
HETATM 33 C C2D NAD . . . S 2 165.606 211.414 215.524 1 59.45 ? C2D NAD 600 F 1 
HETATM 34 O O2D NAD . . . S 2 165.782 212.743 216.024 1 59.45 ? O2D NAD 600 F 1 
HETATM 35 C C1D NAD . . . S 2 166.809 210.488 215.771 1 59.45 ? C1D NAD 600 F 1 
HETATM 36 N N1N NAD . . . S 2 167.853 210.605 214.71 1 59.45 ? N1N NAD 600 F 1 
HETATM 37 C C2N NAD . . . S 2 168.974 211.327 214.961 1 59.45 ? C2N NAD 600 F 1 
HETATM 38 C C3N NAD . . . S 2 170.057 211.361 214.051 1 59.45 ? C3N NAD 600 F 1 
HETATM 39 C C7N NAD . . . S 2 171.236 212.075 214.341 1 59.45 ? C7N NAD 600 F 1 
HETATM 40 O O7N NAD . . . S 2 171.943 212.551 213.462 1 59.45 ? O7N NAD 600 F 1 
HETATM 41 N N7N NAD . . . S 2 171.63 212.122 215.59 1 59.45 ? N7N NAD 600 F 1 
HETATM 42 C C4N NAD . . . S 2 169.937 210.686 212.824 1 59.45 ? C4N NAD 600 F 1 
HETATM 43 C C5N NAD . . . S 2 168.766 209.961 212.572 1 59.45 ? C5N NAD 600 F 1 
HETATM 44 C C6N NAD . . . S 2 167.741 209.929 213.536 1 59.45 ? C6N NAD 600 F 1 
HETATM 45 H H51A NAD . . . S 2 160.153 207.813 212.18 1 59.45 ? H51A NAD 600 F 1 
HETATM 46 H H52A NAD . . . S 2 159.04 209.014 212.828 1 59.45 ? H52A NAD 600 F 1 
HETATM 47 H H4B NAD . . . S 2 157.93 207.581 211.232 1 59.45 ? H4B NAD 600 F 1 
HETATM 48 H H3B NAD . . . S 2 160.239 207.465 209.745 1 59.45 ? H3B NAD 600 F 1 
HETATM 49 H HO3A NAD . . . S 2 158.779 206.502 208.211 1 59.45 ? HO3A NAD 600 F 1 
HETATM 50 H H2B NAD . . . S 2 160.175 209.701 208.95 1 59.45 ? H2B NAD 600 F 1 
HETATM 51 H HO2A NAD . . . S 2 160.151 208.649 207 1 59.45 ? HO2A NAD 600 F 1 
HETATM 52 H H1B NAD . . . S 2 157.196 209.487 208.546 1 59.45 ? H1B NAD 600 F 1 
HETATM 53 H H8A NAD . . . S 2 160.023 211.825 209.888 1 59.45 ? H8A NAD 600 F 1 
HETATM 54 H H61A NAD . . . S 2 157.689 216.089 208.524 1 59.45 ? H61A NAD 600 F 1 
HETATM 55 H H62A NAD . . . S 2 156.05 216.26 207.904 1 59.45 ? H62A NAD 600 F 1 
HETATM 56 H H2A NAD . . . S 2 154.145 212.499 207.364 1 59.45 ? H2A NAD 600 F 1 
HETATM 57 H H51N NAD . . . S 2 164.614 207.496 214.799 1 59.45 ? H51N NAD 600 F 1 
HETATM 58 H H52N NAD . . . S 2 163.16 208.469 215.045 1 59.45 ? H52N NAD 600 F 1 
HETATM 59 H H4D NAD . . . S 2 164.638 208.629 216.995 1 59.45 ? H4D NAD 600 F 1 
HETATM 60 H H3D NAD . . . S 2 163.523 210.855 215.814 1 59.45 ? H3D NAD 600 F 1 
HETATM 61 H HO3N NAD . . . S 2 164.703 211.963 217.642 1 59.45 ? HO3N NAD 600 F 1 
HETATM 62 H H2D NAD . . . S 2 165.371 211.444 214.46 1 59.45 ? H2D NAD 600 F 1 
HETATM 63 H HO2N NAD . . . S 2 166.293 213.242 215.383 1 59.45 ? HO2N NAD 600 F 1 
HETATM 64 H H1D NAD . . . S 2 167.241 210.764 216.732 1 59.45 ? H1D NAD 600 F 1 
HETATM 65 H H2N NAD . . . S 2 168.998 211.866 215.896 1 59.45 ? H2N NAD 600 F 1 
HETATM 66 H H71N NAD . . . S 2 171.078 211.676 216.307 1 59.45 ? H71N NAD 600 F 1 
HETATM 67 H H72N NAD . . . S 2 172.279 212.856 215.833 1 59.45 ? H72N NAD 600 F 1 
HETATM 68 H H4N NAD . . . S 2 170.73 210.705 212.091 1 59.45 ? H4N NAD 600 F 1 
HETATM 69 H H5N NAD . . . S 2 168.666 209.426 211.64 1 59.45 ? H5N NAD 600 F 1 
HETATM 70 H H6N NAD . . . S 2 166.848 209.343 213.379 1 59.45 ? H6N NAD 600 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           70 
#