data_7RGL
#
_model_server_result.job_id            4ySsy-TRsebuMkvZntGFow 
_model_server_result.datetime_utc      '2024-12-26 15:53:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    7RGL 
#
_exptl.entry_id    7RGL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 331 A CYS 331 1_555 I C2 IMP . A IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale2 B SG CYS 331 B CYS 331 1_555 K C2 IMP . B IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale3 C SG CYS 331 C CYS 331 1_555 M C2 IMP . C IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale4 D SG CYS 331 D CYS 331 1_555 O C2 IMP . D IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale5 E SG CYS 331 E CYS 331 1_555 Q C2 IMP . E IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale6 F SG CYS 331 F CYS 331 1_555 S C2 IMP . F IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale7 G SG CYS 331 G CYS 331 1_555 U C2 IMP . G IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale8 H SG CYS 331 H CYS 331 1_555 W C2 IMP . H IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 171 n n 
P O2P IMP sing 172 n n 
P O3P IMP sing 173 n n 
P O5' IMP sing 174 n n 
O2P HOP2 IMP sing 175 n n 
O3P HOP3 IMP sing 176 n n 
O5' C5' IMP sing 177 n n 
C5' C4' IMP sing 178 n n 
C5' "H5'1" IMP sing 179 n n 
C5' "H5'2" IMP sing 180 n n 
C4' O4' IMP sing 181 n n 
C4' C3' IMP sing 182 n n 
C4' H4' IMP sing 183 n n 
O4' C1' IMP sing 184 n n 
C3' O3' IMP sing 185 n n 
C3' C2' IMP sing 186 n n 
C3' H3' IMP sing 187 n n 
O3' HO3' IMP sing 188 n n 
C2' O2' IMP sing 189 n n 
C2' C1' IMP sing 190 n n 
C2' H2' IMP sing 191 n n 
O2' HO2' IMP sing 192 n n 
C1' N9 IMP sing 193 n n 
C1' H1' IMP sing 194 n n 
N9 C8 IMP sing 195 n y 
N9 C4 IMP sing 196 n y 
C8 N7 IMP doub 197 n y 
C8 H8 IMP sing 198 n n 
N7 C5 IMP sing 199 n y 
C5 C6 IMP sing 200 n n 
C5 C4 IMP doub 201 n y 
C6 O6 IMP doub 202 n n 
C6 N1 IMP sing 203 n n 
N1 C2 IMP sing 204 n n 
N1 HN1 IMP sing 205 n n 
C2 N3 IMP doub 206 n n 
C2 H2 IMP sing 207 n n 
N3 C4 IMP sing 208 n n 
#
_atom_sites.entry_id                     7RGL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 IMP A 1 601 603 IMP IMP . 
J 3 NAD A 1 602 604 NAD NAD . 
K 2 IMP B 1 601 603 IMP IMP . 
L 3 NAD B 1 602 604 NAD NAD . 
M 2 IMP C 1 601 603 IMP IMP . 
N 3 NAD C 1 602 604 NAD NAD . 
O 2 IMP D 1 601 603 IMP IMP . 
P 3 NAD D 1 602 604 NAD NAD . 
Q 2 IMP E 1 601 603 IMP IMP . 
R 3 NAD E 1 602 604 NAD NAD . 
S 2 IMP F 1 601 603 IMP IMP . 
T 3 NAD F 1 602 604 NAD NAD . 
U 2 IMP G 1 601 603 IMP IMP . 
V 3 NAD G 1 602 604 NAD NAD . 
W 2 IMP H 1 601 603 IMP IMP . 
X 3 NAD H 1 602 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . K 2 166.8 191.877 138.349 1 47.32 ? P IMP 601 B 1 
HETATM 2 O O1P IMP . . . K 2 167.411 192.055 136.996 1 47.32 ? O1P IMP 601 B 1 
HETATM 3 O O2P IMP . . . K 2 166.913 190.548 139.011 1 47.32 ? O2P IMP 601 B 1 
HETATM 4 O O3P IMP . . . K 2 165.345 192.208 138.252 1 47.32 ? O3P IMP 601 B 1 
HETATM 5 O O5' IMP . . . K 2 167.435 192.935 139.344 1 47.32 ? O5' IMP 601 B 1 
HETATM 6 C C5' IMP . . . K 2 168.446 193.83 138.928 1 47.32 ? C5' IMP 601 B 1 
HETATM 7 C C4' IMP . . . K 2 169.284 194.276 140.092 1 47.32 ? C4' IMP 601 B 1 
HETATM 8 O O4' IMP . . . K 2 170.617 193.728 139.968 1 47.32 ? O4' IMP 601 B 1 
HETATM 9 C C3' IMP . . . K 2 169.512 195.769 140.207 1 47.32 ? C3' IMP 601 B 1 
HETATM 10 O O3' IMP . . . K 2 168.432 196.449 140.809 1 47.32 ? O3' IMP 601 B 1 
HETATM 11 C C2' IMP . . . K 2 170.8 195.846 141.003 1 47.32 ? C2' IMP 601 B 1 
HETATM 12 O O2' IMP . . . K 2 170.561 195.617 142.381 1 47.32 ? O2' IMP 601 B 1 
HETATM 13 C C1' IMP . . . K 2 171.564 194.655 140.442 1 47.32 ? C1' IMP 601 B 1 
HETATM 14 N N9 IMP . . . K 2 172.422 195.059 139.322 1 47.32 ? N9 IMP 601 B 1 
HETATM 15 C C8 IMP . . . K 2 172.591 195.948 138.341 1 47.32 ? C8 IMP 601 B 1 
HETATM 16 N N7 IMP . . . K 2 173.715 195.629 137.705 1 47.32 ? N7 IMP 601 B 1 
HETATM 17 C C5 IMP . . . K 2 174.229 194.566 138.287 1 47.32 ? C5 IMP 601 B 1 
HETATM 18 C C6 IMP . . . K 2 175.482 193.753 138.008 1 47.32 ? C6 IMP 601 B 1 
HETATM 19 O O6 IMP . . . K 2 176.187 194.056 137.122 1 47.32 ? O6 IMP 601 B 1 
HETATM 20 N N1 IMP . . . K 2 175.801 192.624 138.814 1 47.32 ? N1 IMP 601 B 1 
HETATM 21 C C2 IMP . . . K 2 174.941 192.243 139.891 1 47.32 ? C2 IMP 601 B 1 
HETATM 22 N N3 IMP . . . K 2 173.745 193.035 140.144 1 47.32 ? N3 IMP 601 B 1 
HETATM 23 C C4 IMP . . . K 2 173.422 194.209 139.303 1 47.32 ? C4 IMP 601 B 1 
HETATM 24 H "H5'1" IMP . . . K 2 169.092 193.335 138.202 1 47.32 ? "H5'1" IMP 601 B 1 
HETATM 25 H "H5'2" IMP . . . K 2 167.99 194.707 138.469 1 47.32 ? "H5'2" IMP 601 B 1 
HETATM 26 H H4' IMP . . . K 2 168.834 193.912 141.015 1 47.32 ? H4' IMP 601 B 1 
HETATM 27 H H3' IMP . . . K 2 169.683 196.181 139.212 1 47.32 ? H3' IMP 601 B 1 
HETATM 28 H HO3' IMP . . . K 2 168.079 195.918 141.527 1 47.32 ? HO3' IMP 601 B 1 
HETATM 29 H H2' IMP . . . K 2 171.328 196.784 140.832 1 47.32 ? H2' IMP 601 B 1 
HETATM 30 H HO2' IMP . . . K 2 169.749 196.056 142.643 1 47.32 ? HO2' IMP 601 B 1 
HETATM 31 H H1' IMP . . . K 2 172.168 194.199 141.226 1 47.32 ? H1' IMP 601 B 1 
HETATM 32 H H8 IMP . . . K 2 171.936 196.774 138.107 1 47.32 ? H8 IMP 601 B 1 
HETATM 33 H HN1 IMP . . . K 2 176.605 192.113 138.632 1 47.32 ? HN1 IMP 601 B 1 
HETATM 34 H H2 IMP . . . K 2 175.174 191.385 140.505 1 47.32 ? H2 IMP 601 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#