data_7RGL # _model_server_result.job_id 1q20indJOE2Mmh2rDyPiOA _model_server_result.datetime_utc '2024-12-26 15:03:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 7RGL # _exptl.entry_id 7RGL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RGL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 331 A CYS 331 1_555 I C2 IMP . A IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale2 B SG CYS 331 B CYS 331 1_555 K C2 IMP . B IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale3 C SG CYS 331 C CYS 331 1_555 M C2 IMP . C IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale4 D SG CYS 331 D CYS 331 1_555 O C2 IMP . D IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale5 E SG CYS 331 E CYS 331 1_555 Q C2 IMP . E IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale6 F SG CYS 331 F CYS 331 1_555 S C2 IMP . F IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale7 G SG CYS 331 G CYS 331 1_555 U C2 IMP . G IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale8 H SG CYS 331 H CYS 331 1_555 W C2 IMP . H IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 273 n n PA O2A NAD sing 274 n n PA O5B NAD sing 275 n n PA O3 NAD sing 276 n n O2A HOA2 NAD sing 277 n n O5B C5B NAD sing 278 n n C5B C4B NAD sing 279 n n C5B H51A NAD sing 280 n n C5B H52A NAD sing 281 n n C4B O4B NAD sing 282 n n C4B C3B NAD sing 283 n n C4B H4B NAD sing 284 n n O4B C1B NAD sing 285 n n C3B O3B NAD sing 286 n n C3B C2B NAD sing 287 n n C3B H3B NAD sing 288 n n O3B HO3A NAD sing 289 n n C2B O2B NAD sing 290 n n C2B C1B NAD sing 291 n n C2B H2B NAD sing 292 n n O2B HO2A NAD sing 293 n n C1B N9A NAD sing 294 n n C1B H1B NAD sing 295 n n N9A C8A NAD sing 296 n y N9A C4A NAD sing 297 n y C8A N7A NAD doub 298 n y C8A H8A NAD sing 299 n n N7A C5A NAD sing 300 n y C5A C6A NAD sing 301 n y C5A C4A NAD doub 302 n y C6A N6A NAD sing 303 n n C6A N1A NAD doub 304 n y N6A H61A NAD sing 305 n n N6A H62A NAD sing 306 n n N1A C2A NAD sing 307 n y C2A N3A NAD doub 308 n y C2A H2A NAD sing 309 n n N3A C4A NAD sing 310 n y O3 PN NAD sing 311 n n PN O1N NAD doub 312 n n PN O2N NAD sing 313 n n PN O5D NAD sing 314 n n O5D C5D NAD sing 315 n n C5D C4D NAD sing 316 n n C5D H51N NAD sing 317 n n C5D H52N NAD sing 318 n n C4D O4D NAD sing 319 n n C4D C3D NAD sing 320 n n C4D H4D NAD sing 321 n n O4D C1D NAD sing 322 n n C3D O3D NAD sing 323 n n C3D C2D NAD sing 324 n n C3D H3D NAD sing 325 n n O3D HO3N NAD sing 326 n n C2D O2D NAD sing 327 n n C2D C1D NAD sing 328 n n C2D H2D NAD sing 329 n n O2D HO2N NAD sing 330 n n C1D N1N NAD sing 331 n n C1D H1D NAD sing 332 n n N1N C2N NAD sing 333 n y N1N C6N NAD doub 334 n y C2N C3N NAD doub 335 n y C2N H2N NAD sing 336 n n C3N C7N NAD sing 337 n n C3N C4N NAD sing 338 n y C7N O7N NAD doub 339 n n C7N N7N NAD sing 340 n n N7N H71N NAD sing 341 n n N7N H72N NAD sing 342 n n C4N C5N NAD doub 343 n y C4N H4N NAD sing 344 n n C5N C6N NAD sing 345 n y C5N H5N NAD sing 346 n n C6N H6N NAD sing 347 n n # _atom_sites.entry_id 7RGL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IMP A 1 601 603 IMP IMP . J 3 NAD A 1 602 604 NAD NAD . K 2 IMP B 1 601 603 IMP IMP . L 3 NAD B 1 602 604 NAD NAD . M 2 IMP C 1 601 603 IMP IMP . N 3 NAD C 1 602 604 NAD NAD . O 2 IMP D 1 601 603 IMP IMP . P 3 NAD D 1 602 604 NAD NAD . Q 2 IMP E 1 601 603 IMP IMP . R 3 NAD E 1 602 604 NAD NAD . S 2 IMP F 1 601 603 IMP IMP . T 3 NAD F 1 602 604 NAD NAD . U 2 IMP G 1 601 603 IMP IMP . V 3 NAD G 1 602 604 NAD NAD . W 2 IMP H 1 601 603 IMP IMP . X 3 NAD H 1 602 604 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 3 201.103 155.586 143.113 1 49.41 ? PA NAD 602 A 1 HETATM 2 O O1A NAD . . . J 3 200.61 156.021 144.461 1 49.41 ? O1A NAD 602 A 1 HETATM 3 O O2A NAD . . . J 3 202.542 156.005 142.963 1 49.41 ? O2A NAD 602 A 1 HETATM 4 O O5B NAD . . . J 3 200.993 153.955 142.926 1 49.41 ? O5B NAD 602 A 1 HETATM 5 C C5B NAD . . . J 3 199.753 153.351 143.096 1 49.41 ? C5B NAD 602 A 1 HETATM 6 C C4B NAD . . . J 3 199.93 152.031 143.804 1 49.41 ? C4B NAD 602 A 1 HETATM 7 O O4B NAD . . . J 3 201.493 151.74 144.089 1 49.41 ? O4B NAD 602 A 1 HETATM 8 C C3B NAD . . . J 3 199.35 152.102 144.957 1 49.41 ? C3B NAD 602 A 1 HETATM 9 O O3B NAD . . . J 3 198.878 150.738 145.338 1 49.41 ? O3B NAD 602 A 1 HETATM 10 C C2B NAD . . . J 3 200.482 152.583 145.872 1 49.41 ? C2B NAD 602 A 1 HETATM 11 O O2B NAD . . . J 3 200.198 152.316 147.165 1 49.41 ? O2B NAD 602 A 1 HETATM 12 C C1B NAD . . . J 3 201.66 151.739 145.378 1 49.41 ? C1B NAD 602 A 1 HETATM 13 N N9A NAD . . . J 3 202.949 152.372 145.7 1 49.41 ? N9A NAD 602 A 1 HETATM 14 C C8A NAD . . . J 3 203.48 153.581 145.738 1 49.41 ? C8A NAD 602 A 1 HETATM 15 N N7A NAD . . . J 3 204.748 153.431 146.11 1 49.41 ? N7A NAD 602 A 1 HETATM 16 C C5A NAD . . . J 3 204.977 152.133 146.298 1 49.41 ? C5A NAD 602 A 1 HETATM 17 C C6A NAD . . . J 3 206.096 151.449 146.685 1 49.41 ? C6A NAD 602 A 1 HETATM 18 N N6A NAD . . . J 3 207.45 151.751 147.055 1 49.41 ? N6A NAD 602 A 1 HETATM 19 N N1A NAD . . . J 3 206.057 150.143 146.797 1 49.41 ? N1A NAD 602 A 1 HETATM 20 C C2A NAD . . . J 3 204.921 149.473 146.534 1 49.41 ? C2A NAD 602 A 1 HETATM 21 N N3A NAD . . . J 3 203.824 150.143 146.155 1 49.41 ? N3A NAD 602 A 1 HETATM 22 C C4A NAD . . . J 3 203.86 151.471 146.041 1 49.41 ? C4A NAD 602 A 1 HETATM 23 O O3 NAD . . . J 3 200.231 156.274 141.918 1 49.41 ? O3 NAD 602 A 1 HETATM 24 P PN NAD . . . J 3 198.768 157.001 142.085 1 49.41 ? PN NAD 602 A 1 HETATM 25 O O1N NAD . . . J 3 198.299 157.022 143.512 1 49.41 ? O1N NAD 602 A 1 HETATM 26 O O2N NAD . . . J 3 197.761 156.285 141.229 1 49.41 ? O2N NAD 602 A 1 HETATM 27 O O5D NAD . . . J 3 198.948 158.529 141.535 1 49.41 ? O5D NAD 602 A 1 HETATM 28 C C5D NAD . . . J 3 199.237 158.676 140.177 1 49.41 ? C5D NAD 602 A 1 HETATM 29 C C4D NAD . . . J 3 199.266 160.142 139.798 1 49.41 ? C4D NAD 602 A 1 HETATM 30 O O4D NAD . . . J 3 197.772 160.684 139.52 1 49.41 ? O4D NAD 602 A 1 HETATM 31 C C3D NAD . . . J 3 199.786 160.87 140.748 1 49.41 ? C3D NAD 602 A 1 HETATM 32 O O3D NAD . . . J 3 200.643 161.898 140.1 1 49.41 ? O3D NAD 602 A 1 HETATM 33 C C2D NAD . . . J 3 198.601 161.531 141.472 1 49.41 ? C2D NAD 602 A 1 HETATM 34 O O2D NAD . . . J 3 198.922 162.774 141.908 1 49.41 ? O2D NAD 602 A 1 HETATM 35 C C1D NAD . . . J 3 197.477 161.579 140.421 1 49.41 ? C1D NAD 602 A 1 HETATM 36 N N1N NAD . . . J 3 196.193 161.199 141.028 1 49.41 ? N1N NAD 602 A 1 HETATM 37 C C2N NAD . . . J 3 195.597 162.031 141.9 1 49.41 ? C2N NAD 602 A 1 HETATM 38 C C3N NAD . . . J 3 194.393 161.68 142.467 1 49.41 ? C3N NAD 602 A 1 HETATM 39 C C7N NAD . . . J 3 193.719 162.618 143.461 1 49.41 ? C7N NAD 602 A 1 HETATM 40 O O7N NAD . . . J 3 192.548 162.598 143.594 1 49.41 ? O7N NAD 602 A 1 HETATM 41 N N7N NAD . . . J 3 194.516 163.523 144.255 1 49.41 ? N7N NAD 602 A 1 HETATM 42 C C4N NAD . . . J 3 193.808 160.506 142.146 1 49.41 ? C4N NAD 602 A 1 HETATM 43 C C5N NAD . . . J 3 194.406 159.672 141.265 1 49.41 ? C5N NAD 602 A 1 HETATM 44 C C6N NAD . . . J 3 195.618 160.024 140.703 1 49.41 ? C6N NAD 602 A 1 HETATM 45 H H51A NAD . . . J 3 199.295 153.182 142.122 1 49.41 ? H51A NAD 602 A 1 HETATM 46 H H52A NAD . . . J 3 199.111 154 143.692 1 49.41 ? H52A NAD 602 A 1 HETATM 47 H H4B NAD . . . J 3 199.497 151.224 143.213 1 49.41 ? H4B NAD 602 A 1 HETATM 48 H H3B NAD . . . J 3 198.526 152.815 144.941 1 49.41 ? H3B NAD 602 A 1 HETATM 49 H HO3A NAD . . . J 3 198.105 150.812 145.903 1 49.41 ? HO3A NAD 602 A 1 HETATM 50 H H2B NAD . . . J 3 200.676 153.646 145.727 1 49.41 ? H2B NAD 602 A 1 HETATM 51 H HO2A NAD . . . J 3 199.737 153.064 147.552 1 49.41 ? HO2A NAD 602 A 1 HETATM 52 H H1B NAD . . . J 3 201.611 150.726 145.778 1 49.41 ? H1B NAD 602 A 1 HETATM 53 H H8A NAD . . . J 3 202.981 154.511 145.511 1 49.41 ? H8A NAD 602 A 1 HETATM 54 H H61A NAD . . . J 3 208.047 152.555 146.922 1 49.41 ? H61A NAD 602 A 1 HETATM 55 H H62A NAD . . . J 3 207.902 150.999 147.555 1 49.41 ? H62A NAD 602 A 1 HETATM 56 H H2A NAD . . . J 3 204.893 148.397 146.628 1 49.41 ? H2A NAD 602 A 1 HETATM 57 H H51N NAD . . . J 3 198.471 158.169 139.59 1 49.41 ? H51N NAD 602 A 1 HETATM 58 H H52N NAD . . . J 3 200.208 158.23 139.965 1 49.41 ? H52N NAD 602 A 1 HETATM 59 H H4D NAD . . . J 3 199.861 160.263 138.893 1 49.41 ? H4D NAD 602 A 1 HETATM 60 H H3D NAD . . . J 3 200.368 160.255 141.435 1 49.41 ? H3D NAD 602 A 1 HETATM 61 H HO3N NAD . . . J 3 201.56 161.748 140.342 1 49.41 ? HO3N NAD 602 A 1 HETATM 62 H H2D NAD . . . J 3 198.292 160.913 142.315 1 49.41 ? H2D NAD 602 A 1 HETATM 63 H HO2N NAD . . . J 3 199.582 163.158 141.325 1 49.41 ? HO2N NAD 602 A 1 HETATM 64 H H1D NAD . . . J 3 197.412 162.57 139.972 1 49.41 ? H1D NAD 602 A 1 HETATM 65 H H2N NAD . . . J 3 196.062 162.972 142.155 1 49.41 ? H2N NAD 602 A 1 HETATM 66 H H71N NAD . . . J 3 193.974 163.845 145.044 1 49.41 ? H71N NAD 602 A 1 HETATM 67 H H72N NAD . . . J 3 194.791 164.314 143.69 1 49.41 ? H72N NAD 602 A 1 HETATM 68 H H4N NAD . . . J 3 192.863 160.233 142.592 1 49.41 ? H4N NAD 602 A 1 HETATM 69 H H5N NAD . . . J 3 193.938 158.735 141.002 1 49.41 ? H5N NAD 602 A 1 HETATM 70 H H6N NAD . . . J 3 196.104 159.359 140.004 1 49.41 ? H6N NAD 602 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 70 #