data_7RGL
#
_model_server_result.job_id            uDnjKvNZYCMXYB_e4ZXzzQ 
_model_server_result.datetime_utc      '2024-11-14 17:18:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    7RGL 
#
_exptl.entry_id    7RGL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 331 A CYS 331 1_555 I C2 IMP . A IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale2 B SG CYS 331 B CYS 331 1_555 K C2 IMP . B IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale3 C SG CYS 331 C CYS 331 1_555 M C2 IMP . C IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale4 D SG CYS 331 D CYS 331 1_555 O C2 IMP . D IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale5 E SG CYS 331 E CYS 331 1_555 Q C2 IMP . E IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale6 F SG CYS 331 F CYS 331 1_555 S C2 IMP . F IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale7 G SG CYS 331 G CYS 331 1_555 U C2 IMP . G IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale8 H SG CYS 331 H CYS 331 1_555 W C2 IMP . H IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 273 n n 
PA O2A NAD sing 274 n n 
PA O5B NAD sing 275 n n 
PA O3 NAD sing 276 n n 
O2A HOA2 NAD sing 277 n n 
O5B C5B NAD sing 278 n n 
C5B C4B NAD sing 279 n n 
C5B H51A NAD sing 280 n n 
C5B H52A NAD sing 281 n n 
C4B O4B NAD sing 282 n n 
C4B C3B NAD sing 283 n n 
C4B H4B NAD sing 284 n n 
O4B C1B NAD sing 285 n n 
C3B O3B NAD sing 286 n n 
C3B C2B NAD sing 287 n n 
C3B H3B NAD sing 288 n n 
O3B HO3A NAD sing 289 n n 
C2B O2B NAD sing 290 n n 
C2B C1B NAD sing 291 n n 
C2B H2B NAD sing 292 n n 
O2B HO2A NAD sing 293 n n 
C1B N9A NAD sing 294 n n 
C1B H1B NAD sing 295 n n 
N9A C8A NAD sing 296 n y 
N9A C4A NAD sing 297 n y 
C8A N7A NAD doub 298 n y 
C8A H8A NAD sing 299 n n 
N7A C5A NAD sing 300 n y 
C5A C6A NAD sing 301 n y 
C5A C4A NAD doub 302 n y 
C6A N6A NAD sing 303 n n 
C6A N1A NAD doub 304 n y 
N6A H61A NAD sing 305 n n 
N6A H62A NAD sing 306 n n 
N1A C2A NAD sing 307 n y 
C2A N3A NAD doub 308 n y 
C2A H2A NAD sing 309 n n 
N3A C4A NAD sing 310 n y 
O3 PN NAD sing 311 n n 
PN O1N NAD doub 312 n n 
PN O2N NAD sing 313 n n 
PN O5D NAD sing 314 n n 
O5D C5D NAD sing 315 n n 
C5D C4D NAD sing 316 n n 
C5D H51N NAD sing 317 n n 
C5D H52N NAD sing 318 n n 
C4D O4D NAD sing 319 n n 
C4D C3D NAD sing 320 n n 
C4D H4D NAD sing 321 n n 
O4D C1D NAD sing 322 n n 
C3D O3D NAD sing 323 n n 
C3D C2D NAD sing 324 n n 
C3D H3D NAD sing 325 n n 
O3D HO3N NAD sing 326 n n 
C2D O2D NAD sing 327 n n 
C2D C1D NAD sing 328 n n 
C2D H2D NAD sing 329 n n 
O2D HO2N NAD sing 330 n n 
C1D N1N NAD sing 331 n n 
C1D H1D NAD sing 332 n n 
N1N C2N NAD sing 333 n y 
N1N C6N NAD doub 334 n y 
C2N C3N NAD doub 335 n y 
C2N H2N NAD sing 336 n n 
C3N C7N NAD sing 337 n n 
C3N C4N NAD sing 338 n y 
C7N O7N NAD doub 339 n n 
C7N N7N NAD sing 340 n n 
N7N H71N NAD sing 341 n n 
N7N H72N NAD sing 342 n n 
C4N C5N NAD doub 343 n y 
C4N H4N NAD sing 344 n n 
C5N C6N NAD sing 345 n y 
C5N H5N NAD sing 346 n n 
C6N H6N NAD sing 347 n n 
#
_atom_sites.entry_id                     7RGL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 IMP A 1 601 603 IMP IMP . 
J 3 NAD A 1 602 604 NAD NAD . 
K 2 IMP B 1 601 603 IMP IMP . 
L 3 NAD B 1 602 604 NAD NAD . 
M 2 IMP C 1 601 603 IMP IMP . 
N 3 NAD C 1 602 604 NAD NAD . 
O 2 IMP D 1 601 603 IMP IMP . 
P 3 NAD D 1 602 604 NAD NAD . 
Q 2 IMP E 1 601 603 IMP IMP . 
R 3 NAD E 1 602 604 NAD NAD . 
S 2 IMP F 1 601 603 IMP IMP . 
T 3 NAD F 1 602 604 NAD NAD . 
U 2 IMP G 1 601 603 IMP IMP . 
V 3 NAD G 1 602 604 NAD NAD . 
W 2 IMP H 1 601 603 IMP IMP . 
X 3 NAD H 1 602 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . L 3 181.734 200.94 143.075 1 49.19 ? PA NAD 602 B 1 
HETATM 2 O O1A NAD . . . L 3 180.906 201.119 144.317 1 49.19 ? O1A NAD 602 B 1 
HETATM 3 O O2A NAD . . . L 3 182.28 202.265 142.611 1 49.19 ? O2A NAD 602 B 1 
HETATM 4 O O5B NAD . . . L 3 182.971 199.888 143.324 1 49.19 ? O5B NAD 602 B 1 
HETATM 5 C C5B NAD . . . L 3 184.19 200.18 142.716 1 49.19 ? C5B NAD 602 B 1 
HETATM 6 C C4B NAD . . . L 3 185.297 200.18 143.745 1 49.19 ? C4B NAD 602 B 1 
HETATM 7 O O4B NAD . . . L 3 185.621 201.697 144.185 1 49.19 ? O4B NAD 602 B 1 
HETATM 8 C C3B NAD . . . L 3 184.935 199.528 144.805 1 49.19 ? C3B NAD 602 B 1 
HETATM 9 O O3B NAD . . . L 3 186.09 198.702 145.26 1 49.19 ? O3B NAD 602 B 1 
HETATM 10 C C2B NAD . . . L 3 184.598 200.603 145.848 1 49.19 ? C2B NAD 602 B 1 
HETATM 11 O O2B NAD . . . L 3 184.874 200.152 147.09 1 49.19 ? O2B NAD 602 B 1 
HETATM 12 C C1B NAD . . . L 3 185.502 201.78 145.473 1 49.19 ? C1B NAD 602 B 1 
HETATM 13 N N9A NAD . . . L 3 184.85 203.06 145.776 1 49.19 ? N9A NAD 602 B 1 
HETATM 14 C C8A NAD . . . L 3 183.636 203.577 145.796 1 49.19 ? C8A NAD 602 B 1 
HETATM 15 N N7A NAD . . . L 3 183.774 204.849 146.155 1 49.19 ? N7A NAD 602 B 1 
HETATM 16 C C5A NAD . . . L 3 185.07 205.093 146.348 1 49.19 ? C5A NAD 602 B 1 
HETATM 17 C C6A NAD . . . L 3 185.746 206.218 146.726 1 49.19 ? C6A NAD 602 B 1 
HETATM 18 N N6A NAD . . . L 3 185.441 207.575 147.079 1 49.19 ? N6A NAD 602 B 1 
HETATM 19 N N1A NAD . . . L 3 187.052 206.186 146.844 1 49.19 ? N1A NAD 602 B 1 
HETATM 20 C C2A NAD . . . L 3 187.731 205.05 146.598 1 49.19 ? C2A NAD 602 B 1 
HETATM 21 N N3A NAD . . . L 3 187.07 203.946 146.229 1 49.19 ? N3A NAD 602 B 1 
HETATM 22 C C4A NAD . . . L 3 185.743 203.978 146.108 1 49.19 ? C4A NAD 602 B 1 
HETATM 23 O O3 NAD . . . L 3 180.792 200.317 141.904 1 49.19 ? O3 NAD 602 B 1 
HETATM 24 P PN NAD . . . L 3 180.134 198.821 142.014 1 49.19 ? PN NAD 602 B 1 
HETATM 25 O O1N NAD . . . L 3 180.135 198.345 143.438 1 49.19 ? O1N NAD 602 B 1 
HETATM 26 O O2N NAD . . . L 3 180.908 197.866 141.149 1 49.19 ? O2N NAD 602 B 1 
HETATM 27 O O5D NAD . . . L 3 178.603 198.948 141.461 1 49.19 ? O5D NAD 602 B 1 
HETATM 28 C C5D NAD . . . L 3 178.438 199.202 140.099 1 49.19 ? C5D NAD 602 B 1 
HETATM 29 C C4D NAD . . . L 3 176.963 199.249 139.761 1 49.19 ? C4D NAD 602 B 1 
HETATM 30 O O4D NAD . . . L 3 176.401 197.759 139.504 1 49.19 ? O4D NAD 602 B 1 
HETATM 31 C C3D NAD . . . L 3 176.27 199.777 140.731 1 49.19 ? C3D NAD 602 B 1 
HETATM 32 O O3D NAD . . . L 3 175.24 200.646 140.104 1 49.19 ? O3D NAD 602 B 1 
HETATM 33 C C2D NAD . . . L 3 175.615 198.602 141.477 1 49.19 ? C2D NAD 602 B 1 
HETATM 34 O O2D NAD . . . L 3 174.381 198.931 141.936 1 49.19 ? O2D NAD 602 B 1 
HETATM 35 C C1D NAD . . . L 3 175.542 197.469 140.438 1 49.19 ? C1D NAD 602 B 1 
HETATM 36 N N1N NAD . . . L 3 175.954 196.192 141.038 1 49.19 ? N1N NAD 602 B 1 
HETATM 37 C C2N NAD . . . L 3 175.14 195.576 141.912 1 49.19 ? C2N NAD 602 B 1 
HETATM 38 C C3N NAD . . . L 3 175.519 194.377 142.471 1 49.19 ? C3N NAD 602 B 1 
HETATM 39 C C7N NAD . . . L 3 174.598 193.684 143.466 1 49.19 ? C7N NAD 602 B 1 
HETATM 40 O O7N NAD . . . L 3 174.627 192.511 143.585 1 49.19 ? O7N NAD 602 B 1 
HETATM 41 N N7N NAD . . . L 3 173.695 194.464 144.279 1 49.19 ? N7N NAD 602 B 1 
HETATM 42 C C4N NAD . . . L 3 176.704 193.819 142.141 1 49.19 ? C4N NAD 602 B 1 
HETATM 43 C C5N NAD . . . L 3 177.52 194.438 141.258 1 49.19 ? C5N NAD 602 B 1 
HETATM 44 C C6N NAD . . . L 3 177.138 195.644 140.703 1 49.19 ? C6N NAD 602 B 1 
HETATM 45 H H51A NAD . . . L 3 184.133 201.163 142.248 1 49.19 ? H51A NAD 602 B 1 
HETATM 46 H H52A NAD . . . L 3 184.404 199.429 141.955 1 49.19 ? H52A NAD 602 B 1 
HETATM 47 H H4B NAD . . . L 3 186.191 199.723 143.321 1 49.19 ? H4B NAD 602 B 1 
HETATM 48 H H3B NAD . . . L 3 184.067 198.902 144.598 1 49.19 ? H3B NAD 602 B 1 
HETATM 49 H HO3A NAD . . . L 3 185.783 198.035 145.879 1 49.19 ? HO3A NAD 602 B 1 
HETATM 50 H H2B NAD . . . L 3 183.549 200.89 145.772 1 49.19 ? H2B NAD 602 B 1 
HETATM 51 H HO2A NAD . . . L 3 184.163 199.58 147.388 1 49.19 ? HO2A NAD 602 B 1 
HETATM 52 H H1B NAD . . . L 3 186.472 201.705 145.965 1 49.19 ? H1B NAD 602 B 1 
HETATM 53 H H8A NAD . . . L 3 182.712 203.067 145.566 1 49.19 ? H8A NAD 602 B 1 
HETATM 54 H H61A NAD . . . L 3 184.613 208.133 146.928 1 49.19 ? H61A NAD 602 B 1 
HETATM 55 H H62A NAD . . . L 3 186.185 208.057 147.563 1 49.19 ? H62A NAD 602 B 1 
HETATM 56 H H2A NAD . . . L 3 188.806 205.029 146.698 1 49.19 ? H2A NAD 602 B 1 
HETATM 57 H H51N NAD . . . L 3 178.916 198.41 139.523 1 49.19 ? H51N NAD 602 B 1 
HETATM 58 H H52N NAD . . . L 3 178.897 200.159 139.85 1 49.19 ? H52N NAD 602 B 1 
HETATM 59 H H4D NAD . . . L 3 176.823 199.843 138.858 1 49.19 ? H4D NAD 602 B 1 
HETATM 60 H H3D NAD . . . L 3 176.911 200.353 141.399 1 49.19 ? H3D NAD 602 B 1 
HETATM 61 H HO3N NAD . . . L 3 175.384 201.557 140.372 1 49.19 ? HO3N NAD 602 B 1 
HETATM 62 H H2D NAD . . . L 3 176.248 198.297 142.31 1 49.19 ? H2D NAD 602 B 1 
HETATM 63 H HO2N NAD . . . L 3 173.982 199.577 141.348 1 49.19 ? HO2N NAD 602 B 1 
HETATM 64 H H1D NAD . . . L 3 174.537 197.392 140.024 1 49.19 ? H1D NAD 602 B 1 
HETATM 65 H H2N NAD . . . L 3 174.191 196.02 142.175 1 49.19 ? H2N NAD 602 B 1 
HETATM 66 H H71N NAD . . . L 3 173.379 193.908 145.06 1 49.19 ? H71N NAD 602 B 1 
HETATM 67 H H72N NAD . . . L 3 172.9 194.746 143.723 1 49.19 ? H72N NAD 602 B 1 
HETATM 68 H H4N NAD . . . L 3 177 192.879 142.582 1 49.19 ? H4N NAD 602 B 1 
HETATM 69 H H5N NAD . . . L 3 178.466 193.992 140.988 1 49.19 ? H5N NAD 602 B 1 
HETATM 70 H H6N NAD . . . L 3 177.788 196.147 140.002 1 49.19 ? H6N NAD 602 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    350 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           70 
#