data_7RGL
#
_model_server_result.job_id            pM3yX9aWLcrE14bLBZFi2A 
_model_server_result.datetime_utc      '2024-12-26 15:10:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":602}' 
#
_entry.id    7RGL 
#
_exptl.entry_id    7RGL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 331 A CYS 331 1_555 I C2 IMP . A IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale2 B SG CYS 331 B CYS 331 1_555 K C2 IMP . B IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale3 C SG CYS 331 C CYS 331 1_555 M C2 IMP . C IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale4 D SG CYS 331 D CYS 331 1_555 O C2 IMP . D IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale5 E SG CYS 331 E CYS 331 1_555 Q C2 IMP . E IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale6 F SG CYS 331 F CYS 331 1_555 S C2 IMP . F IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale7 G SG CYS 331 G CYS 331 1_555 U C2 IMP . G IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale8 H SG CYS 331 H CYS 331 1_555 W C2 IMP . H IMP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 273 n n 
PA O2A NAD sing 274 n n 
PA O5B NAD sing 275 n n 
PA O3 NAD sing 276 n n 
O2A HOA2 NAD sing 277 n n 
O5B C5B NAD sing 278 n n 
C5B C4B NAD sing 279 n n 
C5B H51A NAD sing 280 n n 
C5B H52A NAD sing 281 n n 
C4B O4B NAD sing 282 n n 
C4B C3B NAD sing 283 n n 
C4B H4B NAD sing 284 n n 
O4B C1B NAD sing 285 n n 
C3B O3B NAD sing 286 n n 
C3B C2B NAD sing 287 n n 
C3B H3B NAD sing 288 n n 
O3B HO3A NAD sing 289 n n 
C2B O2B NAD sing 290 n n 
C2B C1B NAD sing 291 n n 
C2B H2B NAD sing 292 n n 
O2B HO2A NAD sing 293 n n 
C1B N9A NAD sing 294 n n 
C1B H1B NAD sing 295 n n 
N9A C8A NAD sing 296 n y 
N9A C4A NAD sing 297 n y 
C8A N7A NAD doub 298 n y 
C8A H8A NAD sing 299 n n 
N7A C5A NAD sing 300 n y 
C5A C6A NAD sing 301 n y 
C5A C4A NAD doub 302 n y 
C6A N6A NAD sing 303 n n 
C6A N1A NAD doub 304 n y 
N6A H61A NAD sing 305 n n 
N6A H62A NAD sing 306 n n 
N1A C2A NAD sing 307 n y 
C2A N3A NAD doub 308 n y 
C2A H2A NAD sing 309 n n 
N3A C4A NAD sing 310 n y 
O3 PN NAD sing 311 n n 
PN O1N NAD doub 312 n n 
PN O2N NAD sing 313 n n 
PN O5D NAD sing 314 n n 
O5D C5D NAD sing 315 n n 
C5D C4D NAD sing 316 n n 
C5D H51N NAD sing 317 n n 
C5D H52N NAD sing 318 n n 
C4D O4D NAD sing 319 n n 
C4D C3D NAD sing 320 n n 
C4D H4D NAD sing 321 n n 
O4D C1D NAD sing 322 n n 
C3D O3D NAD sing 323 n n 
C3D C2D NAD sing 324 n n 
C3D H3D NAD sing 325 n n 
O3D HO3N NAD sing 326 n n 
C2D O2D NAD sing 327 n n 
C2D C1D NAD sing 328 n n 
C2D H2D NAD sing 329 n n 
O2D HO2N NAD sing 330 n n 
C1D N1N NAD sing 331 n n 
C1D H1D NAD sing 332 n n 
N1N C2N NAD sing 333 n y 
N1N C6N NAD doub 334 n y 
C2N C3N NAD doub 335 n y 
C2N H2N NAD sing 336 n n 
C3N C7N NAD sing 337 n n 
C3N C4N NAD sing 338 n y 
C7N O7N NAD doub 339 n n 
C7N N7N NAD sing 340 n n 
N7N H71N NAD sing 341 n n 
N7N H72N NAD sing 342 n n 
C4N C5N NAD doub 343 n y 
C4N H4N NAD sing 344 n n 
C5N C6N NAD sing 345 n y 
C5N H5N NAD sing 346 n n 
C6N H6N NAD sing 347 n n 
#
_atom_sites.entry_id                     7RGL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 IMP A 1 601 603 IMP IMP . 
J 3 NAD A 1 602 604 NAD NAD . 
K 2 IMP B 1 601 603 IMP IMP . 
L 3 NAD B 1 602 604 NAD NAD . 
M 2 IMP C 1 601 603 IMP IMP . 
N 3 NAD C 1 602 604 NAD NAD . 
O 2 IMP D 1 601 603 IMP IMP . 
P 3 NAD D 1 602 604 NAD NAD . 
Q 2 IMP E 1 601 603 IMP IMP . 
R 3 NAD E 1 602 604 NAD NAD . 
S 2 IMP F 1 601 603 IMP IMP . 
T 3 NAD F 1 602 604 NAD NAD . 
U 2 IMP G 1 601 603 IMP IMP . 
V 3 NAD G 1 602 604 NAD NAD . 
W 2 IMP H 1 601 603 IMP IMP . 
X 3 NAD H 1 602 604 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . R 3 200.942 181.735 194.131 1 48.95 ? PA NAD 602 E 1 
HETATM 2 O O1A NAD . . . R 3 201.127 180.91 192.888 1 48.95 ? O1A NAD 602 E 1 
HETATM 3 O O2A NAD . . . R 3 202.264 182.285 194.598 1 48.95 ? O2A NAD 602 E 1 
HETATM 4 O O5B NAD . . . R 3 199.887 182.97 193.881 1 48.95 ? O5B NAD 602 E 1 
HETATM 5 C C5B NAD . . . R 3 200.175 184.189 194.488 1 48.95 ? C5B NAD 602 E 1 
HETATM 6 C C4B NAD . . . R 3 200.179 185.295 193.459 1 48.95 ? C4B NAD 602 E 1 
HETATM 7 O O4B NAD . . . R 3 201.697 185.615 193.02 1 48.95 ? O4B NAD 602 E 1 
HETATM 8 C C3B NAD . . . R 3 199.527 184.934 192.399 1 48.95 ? C3B NAD 602 E 1 
HETATM 9 O O3B NAD . . . R 3 198.699 186.088 191.945 1 48.95 ? O3B NAD 602 E 1 
HETATM 10 C C2B NAD . . . R 3 200.601 184.597 191.355 1 48.95 ? C2B NAD 602 E 1 
HETATM 11 O O2B NAD . . . R 3 200.151 184.877 190.113 1 48.95 ? O2B NAD 602 E 1 
HETATM 12 C C1B NAD . . . R 3 201.779 185.498 191.732 1 48.95 ? C1B NAD 602 E 1 
HETATM 13 N N9A NAD . . . R 3 203.059 184.847 191.426 1 48.95 ? N9A NAD 602 E 1 
HETATM 14 C C8A NAD . . . R 3 203.578 183.634 191.401 1 48.95 ? C8A NAD 602 E 1 
HETATM 15 N N7A NAD . . . R 3 204.849 183.774 191.041 1 48.95 ? N7A NAD 602 E 1 
HETATM 16 C C5A NAD . . . R 3 205.091 185.07 190.851 1 48.95 ? C5A NAD 602 E 1 
HETATM 17 C C6A NAD . . . R 3 206.216 185.747 190.473 1 48.95 ? C6A NAD 602 E 1 
HETATM 18 N N6A NAD . . . R 3 207.572 185.438 190.117 1 48.95 ? N6A NAD 602 E 1 
HETATM 19 N N1A NAD . . . R 3 206.184 187.053 190.357 1 48.95 ? N1A NAD 602 E 1 
HETATM 20 C C2A NAD . . . R 3 205.048 187.732 190.607 1 48.95 ? C2A NAD 602 E 1 
HETATM 21 N N3A NAD . . . R 3 203.945 187.07 190.977 1 48.95 ? N3A NAD 602 E 1 
HETATM 22 C C4A NAD . . . R 3 203.977 185.742 191.095 1 48.95 ? C4A NAD 602 E 1 
HETATM 23 O O3 NAD . . . R 3 200.318 180.788 195.298 1 48.95 ? O3 NAD 602 E 1 
HETATM 24 P PN NAD . . . R 3 198.822 180.13 195.188 1 48.95 ? PN NAD 602 E 1 
HETATM 25 O O1N NAD . . . R 3 198.344 180.133 193.764 1 48.95 ? O1N NAD 602 E 1 
HETATM 26 O O2N NAD . . . R 3 197.868 180.902 196.056 1 48.95 ? O2N NAD 602 E 1 
HETATM 27 O O5D NAD . . . R 3 198.948 178.598 195.739 1 48.95 ? O5D NAD 602 E 1 
HETATM 28 C C5D NAD . . . R 3 199.214 178.433 197.1 1 48.95 ? C5D NAD 602 E 1 
HETATM 29 C C4D NAD . . . R 3 199.252 176.958 197.439 1 48.95 ? C4D NAD 602 E 1 
HETATM 30 O O4D NAD . . . R 3 197.758 176.406 197.693 1 48.95 ? O4D NAD 602 E 1 
HETATM 31 C C3D NAD . . . R 3 199.779 176.262 196.47 1 48.95 ? C3D NAD 602 E 1 
HETATM 32 O O3D NAD . . . R 3 200.641 175.227 197.1 1 48.95 ? O3D NAD 602 E 1 
HETATM 33 C C2D NAD . . . R 3 198.6 175.612 195.723 1 48.95 ? C2D NAD 602 E 1 
HETATM 34 O O2D NAD . . . R 3 198.925 174.378 195.263 1 48.95 ? O2D NAD 602 E 1 
HETATM 35 C C1D NAD . . . R 3 197.468 175.543 196.763 1 48.95 ? C1D NAD 602 E 1 
HETATM 36 N N1N NAD . . . R 3 196.191 175.952 196.163 1 48.95 ? N1N NAD 602 E 1 
HETATM 37 C C2N NAD . . . R 3 195.576 175.136 195.29 1 48.95 ? C2N NAD 602 E 1 
HETATM 38 C C3N NAD . . . R 3 194.376 175.514 194.731 1 48.95 ? C3N NAD 602 E 1 
HETATM 39 C C7N NAD . . . R 3 193.684 174.591 193.737 1 48.95 ? C7N NAD 602 E 1 
HETATM 40 O O7N NAD . . . R 3 192.511 174.618 193.62 1 48.95 ? O7N NAD 602 E 1 
HETATM 41 N N7N NAD . . . R 3 194.465 173.689 192.924 1 48.95 ? N7N NAD 602 E 1 
HETATM 42 C C4N NAD . . . R 3 193.816 176.698 195.06 1 48.95 ? C4N NAD 602 E 1 
HETATM 43 C C5N NAD . . . R 3 194.434 177.516 195.942 1 48.95 ? C5N NAD 602 E 1 
HETATM 44 C C6N NAD . . . R 3 195.641 177.137 196.497 1 48.95 ? C6N NAD 602 E 1 
HETATM 45 H H51A NAD . . . R 3 199.419 184.403 195.243 1 48.95 ? H51A NAD 602 E 1 
HETATM 46 H H52A NAD . . . R 3 201.155 184.134 194.963 1 48.95 ? H52A NAD 602 E 1 
HETATM 47 H H4B NAD . . . R 3 199.724 186.19 193.882 1 48.95 ? H4B NAD 602 E 1 
HETATM 48 H H3B NAD . . . R 3 198.901 184.066 192.606 1 48.95 ? H3B NAD 602 E 1 
HETATM 49 H HO3A NAD . . . R 3 198.035 185.781 191.323 1 48.95 ? HO3A NAD 602 E 1 
HETATM 50 H H2B NAD . . . R 3 200.886 183.548 191.428 1 48.95 ? H2B NAD 602 E 1 
HETATM 51 H HO2A NAD . . . R 3 199.58 184.167 189.812 1 48.95 ? HO2A NAD 602 E 1 
HETATM 52 H H1B NAD . . . R 3 201.704 186.469 191.243 1 48.95 ? H1B NAD 602 E 1 
HETATM 53 H H8A NAD . . . R 3 203.069 182.709 191.629 1 48.95 ? H8A NAD 602 E 1 
HETATM 54 H H61A NAD . . . R 3 208.132 184.612 190.269 1 48.95 ? H61A NAD 602 E 1 
HETATM 55 H H62A NAD . . . R 3 208.051 186.18 189.627 1 48.95 ? H62A NAD 602 E 1 
HETATM 56 H H2A NAD . . . R 3 205.027 188.807 190.509 1 48.95 ? H2A NAD 602 E 1 
HETATM 57 H H51N NAD . . . R 3 200.177 178.884 197.338 1 48.95 ? H51N NAD 602 E 1 
HETATM 58 H H52N NAD . . . R 3 198.432 178.919 197.684 1 48.95 ? H52N NAD 602 E 1 
HETATM 59 H H4D NAD . . . R 3 199.844 176.815 198.343 1 48.95 ? H4D NAD 602 E 1 
HETATM 60 H H3D NAD . . . R 3 200.359 176.899 195.803 1 48.95 ? H3D NAD 602 E 1 
HETATM 61 H HO3N NAD . . . R 3 201.555 175.376 196.848 1 48.95 ? HO3N NAD 602 E 1 
HETATM 62 H H2D NAD . . . R 3 198.297 176.247 194.891 1 48.95 ? H2D NAD 602 E 1 
HETATM 63 H HO2N NAD . . . R 3 199.575 173.98 195.846 1 48.95 ? HO2N NAD 602 E 1 
HETATM 64 H H1D NAD . . . R 3 197.392 174.539 197.181 1 48.95 ? H1D NAD 602 E 1 
HETATM 65 H H2N NAD . . . R 3 196.021 174.188 195.028 1 48.95 ? H2N NAD 602 E 1 
HETATM 66 H H71N NAD . . . R 3 193.909 173.373 192.142 1 48.95 ? H71N NAD 602 E 1 
HETATM 67 H H72N NAD . . . R 3 194.746 172.894 193.479 1 48.95 ? H72N NAD 602 E 1 
HETATM 68 H H4N NAD . . . R 3 192.875 176.992 194.619 1 48.95 ? H4N NAD 602 E 1 
HETATM 69 H H5N NAD . . . R 3 193.986 178.461 196.211 1 48.95 ? H5N NAD 602 E 1 
HETATM 70 H H6N NAD . . . R 3 196.143 177.788 197.197 1 48.95 ? H6N NAD 602 E 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           70 
#