data_7RGN
#
_model_server_result.job_id            gde6IA8vtlRbczgCQpWfdA 
_model_server_result.datetime_utc      '2024-11-10 01:27:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7RGN 
#
_exptl.entry_id    7RGN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7RGN 
_cell.length_a            64.477 
_cell.length_b            64.477 
_cell.length_c            320.77 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.2385 55.83872 267.308333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 108 A HIS 108 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc2 A OE1 GLU 172 A GLU 172 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc3 A OE2 GLU 172 A GLU 172 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc4 A NE2 HIS 224 A HIS 224 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc5 A ND1 HIS 263 A HIS 263 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7RGN 
_atom_sites.fract_transf_matrix[1][1]    0.015509 
_atom_sites.fract_transf_matrix[1][2]    0.008954 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017909 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 401 GOL GOL . 
C 3 IPA A 1 402 601 IPA IPA . 
D 4 ZN A 1 403 1 ZN ZN . 
E 5 HOH A 1 501 22 HOH HOH . 
E 5 HOH A 2 502 49 HOH HOH . 
E 5 HOH A 3 503 116 HOH HOH . 
E 5 HOH A 4 504 40 HOH HOH . 
E 5 HOH A 5 505 42 HOH HOH . 
E 5 HOH A 6 506 118 HOH HOH . 
E 5 HOH A 7 507 67 HOH HOH . 
E 5 HOH A 8 508 44 HOH HOH . 
E 5 HOH A 9 509 9 HOH HOH . 
E 5 HOH A 10 510 36 HOH HOH . 
E 5 HOH A 11 511 137 HOH HOH . 
E 5 HOH A 12 512 76 HOH HOH . 
E 5 HOH A 13 513 27 HOH HOH . 
E 5 HOH A 14 514 61 HOH HOH . 
E 5 HOH A 15 515 6 HOH HOH . 
E 5 HOH A 16 516 79 HOH HOH . 
E 5 HOH A 17 517 50 HOH HOH . 
E 5 HOH A 18 518 31 HOH HOH . 
E 5 HOH A 19 519 117 HOH HOH . 
E 5 HOH A 20 520 55 HOH HOH . 
E 5 HOH A 21 521 13 HOH HOH . 
E 5 HOH A 22 522 16 HOH HOH . 
E 5 HOH A 23 523 14 HOH HOH . 
E 5 HOH A 24 524 24 HOH HOH . 
E 5 HOH A 25 525 21 HOH HOH . 
E 5 HOH A 26 526 119 HOH HOH . 
E 5 HOH A 27 527 8 HOH HOH . 
E 5 HOH A 28 528 127 HOH HOH . 
E 5 HOH A 29 529 7 HOH HOH . 
E 5 HOH A 30 530 26 HOH HOH . 
E 5 HOH A 31 531 28 HOH HOH . 
E 5 HOH A 32 532 83 HOH HOH . 
E 5 HOH A 33 533 106 HOH HOH . 
E 5 HOH A 34 534 15 HOH HOH . 
E 5 HOH A 35 535 141 HOH HOH . 
E 5 HOH A 36 536 129 HOH HOH . 
E 5 HOH A 37 537 99 HOH HOH . 
E 5 HOH A 38 538 52 HOH HOH . 
E 5 HOH A 39 539 103 HOH HOH . 
E 5 HOH A 40 540 33 HOH HOH . 
E 5 HOH A 41 541 10 HOH HOH . 
E 5 HOH A 42 542 12 HOH HOH . 
E 5 HOH A 43 543 5 HOH HOH . 
E 5 HOH A 44 544 75 HOH HOH . 
E 5 HOH A 45 545 11 HOH HOH . 
E 5 HOH A 46 546 4 HOH HOH . 
E 5 HOH A 47 547 38 HOH HOH . 
E 5 HOH A 48 548 64 HOH HOH . 
E 5 HOH A 49 549 18 HOH HOH . 
E 5 HOH A 50 550 115 HOH HOH . 
E 5 HOH A 51 551 134 HOH HOH . 
E 5 HOH A 52 552 20 HOH HOH . 
E 5 HOH A 53 553 25 HOH HOH . 
E 5 HOH A 54 554 140 HOH HOH . 
E 5 HOH A 55 555 84 HOH HOH . 
E 5 HOH A 56 556 62 HOH HOH . 
E 5 HOH A 57 557 37 HOH HOH . 
E 5 HOH A 58 558 122 HOH HOH . 
E 5 HOH A 59 559 90 HOH HOH . 
E 5 HOH A 60 560 135 HOH HOH . 
E 5 HOH A 61 561 39 HOH HOH . 
E 5 HOH A 62 562 108 HOH HOH . 
E 5 HOH A 63 563 56 HOH HOH . 
E 5 HOH A 64 564 3 HOH HOH . 
E 5 HOH A 65 565 81 HOH HOH . 
E 5 HOH A 66 566 65 HOH HOH . 
E 5 HOH A 67 567 53 HOH HOH . 
E 5 HOH A 68 568 17 HOH HOH . 
E 5 HOH A 69 569 41 HOH HOH . 
E 5 HOH A 70 570 124 HOH HOH . 
E 5 HOH A 71 571 85 HOH HOH . 
E 5 HOH A 72 572 136 HOH HOH . 
E 5 HOH A 73 573 69 HOH HOH . 
E 5 HOH A 74 574 123 HOH HOH . 
E 5 HOH A 75 575 95 HOH HOH . 
E 5 HOH A 76 576 43 HOH HOH . 
E 5 HOH A 77 577 35 HOH HOH . 
E 5 HOH A 78 578 130 HOH HOH . 
E 5 HOH A 79 579 120 HOH HOH . 
E 5 HOH A 80 580 45 HOH HOH . 
E 5 HOH A 81 581 104 HOH HOH . 
E 5 HOH A 82 582 105 HOH HOH . 
E 5 HOH A 83 583 107 HOH HOH . 
E 5 HOH A 84 584 111 HOH HOH . 
E 5 HOH A 85 585 54 HOH HOH . 
E 5 HOH A 86 586 19 HOH HOH . 
E 5 HOH A 87 587 32 HOH HOH . 
E 5 HOH A 88 588 112 HOH HOH . 
E 5 HOH A 89 589 91 HOH HOH . 
E 5 HOH A 90 590 29 HOH HOH . 
E 5 HOH A 91 591 59 HOH HOH . 
E 5 HOH A 92 592 78 HOH HOH . 
E 5 HOH A 93 593 132 HOH HOH . 
E 5 HOH A 94 594 47 HOH HOH . 
E 5 HOH A 95 595 58 HOH HOH . 
E 5 HOH A 96 596 57 HOH HOH . 
E 5 HOH A 97 597 77 HOH HOH . 
E 5 HOH A 98 598 144 HOH HOH . 
E 5 HOH A 99 599 139 HOH HOH . 
E 5 HOH A 100 600 48 HOH HOH . 
E 5 HOH A 101 601 89 HOH HOH . 
E 5 HOH A 102 602 110 HOH HOH . 
E 5 HOH A 103 603 88 HOH HOH . 
E 5 HOH A 104 604 101 HOH HOH . 
E 5 HOH A 105 605 113 HOH HOH . 
E 5 HOH A 106 606 86 HOH HOH . 
E 5 HOH A 107 607 147 HOH HOH . 
E 5 HOH A 108 608 102 HOH HOH . 
E 5 HOH A 109 609 146 HOH HOH . 
E 5 HOH A 110 610 133 HOH HOH . 
E 5 HOH A 111 611 87 HOH HOH . 
E 5 HOH A 112 612 142 HOH HOH . 
E 5 HOH A 113 613 74 HOH HOH . 
E 5 HOH A 114 614 60 HOH HOH . 
E 5 HOH A 115 615 143 HOH HOH . 
E 5 HOH A 116 616 138 HOH HOH . 
E 5 HOH A 117 617 148 HOH HOH . 
E 5 HOH A 118 618 92 HOH HOH . 
E 5 HOH A 119 619 70 HOH HOH . 
E 5 HOH A 120 620 96 HOH HOH . 
E 5 HOH A 121 621 121 HOH HOH . 
E 5 HOH A 122 622 109 HOH HOH . 
E 5 HOH A 123 623 100 HOH HOH . 
E 5 HOH A 124 624 97 HOH HOH . 
E 5 HOH A 125 625 125 HOH HOH . 
E 5 HOH A 126 626 94 HOH HOH . 
E 5 HOH A 127 627 93 HOH HOH . 
E 5 HOH A 128 628 131 HOH HOH . 
E 5 HOH A 129 629 114 HOH HOH . 
E 5 HOH A 130 630 145 HOH HOH . 
E 5 HOH A 131 631 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 15.62 42.707 133.218 1 47.68 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . B 2 15.746 42.879 134.598 1 45.95 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . B 2 14.287 41.946 132.995 1 63.33 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . B 2 13.179 42.773 133.165 1 60.45 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . B 2 14.382 41.377 131.562 1 60.18 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . B 2 15.597 40.704 131.474 1 61.31 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#