data_7RGO # _model_server_result.job_id uOE9Rw8JGNLGlh04-liwCg _model_server_result.datetime_utc '2024-11-24 16:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rgo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7RGO # _exptl.entry_id 7RGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RGO _cell.length_a 98.855 _cell.length_b 98.855 _cell.length_c 43.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 304 n n PA O2A NAP sing 305 n n PA O5B NAP sing 306 n n PA O3 NAP sing 307 n n O2A HOA2 NAP sing 308 n n O5B C5B NAP sing 309 n n C5B C4B NAP sing 310 n n C5B H51A NAP sing 311 n n C5B H52A NAP sing 312 n n C4B O4B NAP sing 313 n n C4B C3B NAP sing 314 n n C4B H4B NAP sing 315 n n O4B C1B NAP sing 316 n n C3B O3B NAP sing 317 n n C3B C2B NAP sing 318 n n C3B H3B NAP sing 319 n n O3B HO3A NAP sing 320 n n C2B O2B NAP sing 321 n n C2B C1B NAP sing 322 n n C2B H2B NAP sing 323 n n O2B P2B NAP sing 324 n n C1B N9A NAP sing 325 n n C1B H1B NAP sing 326 n n N9A C8A NAP sing 327 n y N9A C4A NAP sing 328 n y C8A N7A NAP doub 329 n y C8A H8A NAP sing 330 n n N7A C5A NAP sing 331 n y C5A C6A NAP sing 332 n y C5A C4A NAP doub 333 n y C6A N6A NAP sing 334 n n C6A N1A NAP doub 335 n y N6A H61A NAP sing 336 n n N6A H62A NAP sing 337 n n N1A C2A NAP sing 338 n y C2A N3A NAP doub 339 n y C2A H2A NAP sing 340 n n N3A C4A NAP sing 341 n y O3 PN NAP sing 342 n n PN O1N NAP doub 343 n n PN O2N NAP sing 344 n n PN O5D NAP sing 345 n n O5D C5D NAP sing 346 n n C5D C4D NAP sing 347 n n C5D H51N NAP sing 348 n n C5D H52N NAP sing 349 n n C4D O4D NAP sing 350 n n C4D C3D NAP sing 351 n n C4D H4D NAP sing 352 n n O4D C1D NAP sing 353 n n C3D O3D NAP sing 354 n n C3D C2D NAP sing 355 n n C3D H3D NAP sing 356 n n O3D HO3N NAP sing 357 n n C2D O2D NAP sing 358 n n C2D C1D NAP sing 359 n n C2D H2D NAP sing 360 n n O2D HO2N NAP sing 361 n n C1D N1N NAP sing 362 n n C1D H1D NAP sing 363 n n N1N C2N NAP sing 364 n y N1N C6N NAP doub 365 n y C2N C3N NAP doub 366 n y C2N H2N NAP sing 367 n n C3N C7N NAP sing 368 n n C3N C4N NAP sing 369 n y C7N O7N NAP doub 370 n n C7N N7N NAP sing 371 n n N7N H71N NAP sing 372 n n N7N H72N NAP sing 373 n n C4N C5N NAP doub 374 n y C4N H4N NAP sing 375 n n C5N C6N NAP sing 376 n y C5N H5N NAP sing 377 n n C6N H6N NAP sing 378 n n P2B O1X NAP doub 379 n n P2B O2X NAP sing 380 n n P2B O3X NAP sing 381 n n O2X HOP2 NAP sing 382 n n O3X HOP3 NAP sing 383 n n # _atom_sites.entry_id 7RGO _atom_sites.fract_transf_matrix[1][1] 0.010116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 201 NAP NAP . D 3 GOL A 1 202 143 GOL GOL . E 4 4SI A 1 203 3 4SI DRG . F 2 NAP B 1 201 202 NAP NAP . G 5 SO4 B 1 202 1 SO4 SO4 . H 5 SO4 B 1 203 2 SO4 SO4 . I 4 4SI B 1 204 4 4SI DRG . J 6 HOH A 1 301 47 HOH HOH . J 6 HOH A 2 302 100 HOH HOH . J 6 HOH A 3 303 132 HOH HOH . J 6 HOH A 4 304 103 HOH HOH . J 6 HOH A 5 305 76 HOH HOH . J 6 HOH A 6 306 127 HOH HOH . J 6 HOH A 7 307 60 HOH HOH . J 6 HOH A 8 308 77 HOH HOH . J 6 HOH A 9 309 10 HOH HOH . J 6 HOH A 10 310 64 HOH HOH . J 6 HOH A 11 311 6 HOH HOH . J 6 HOH A 12 312 78 HOH HOH . J 6 HOH A 13 313 113 HOH HOH . J 6 HOH A 14 314 31 HOH HOH . J 6 HOH A 15 315 95 HOH HOH . J 6 HOH A 16 316 48 HOH HOH . J 6 HOH A 17 317 43 HOH HOH . J 6 HOH A 18 318 8 HOH HOH . J 6 HOH A 19 319 73 HOH HOH . J 6 HOH A 20 320 104 HOH HOH . J 6 HOH A 21 321 9 HOH HOH . J 6 HOH A 22 322 118 HOH HOH . J 6 HOH A 23 323 33 HOH HOH . J 6 HOH A 24 324 36 HOH HOH . J 6 HOH A 25 325 19 HOH HOH . J 6 HOH A 26 326 32 HOH HOH . J 6 HOH A 27 327 27 HOH HOH . J 6 HOH A 28 328 126 HOH HOH . J 6 HOH A 29 329 92 HOH HOH . J 6 HOH A 30 330 71 HOH HOH . J 6 HOH A 31 331 88 HOH HOH . J 6 HOH A 32 332 70 HOH HOH . J 6 HOH A 33 333 124 HOH HOH . J 6 HOH A 34 334 129 HOH HOH . J 6 HOH A 35 335 28 HOH HOH . J 6 HOH A 36 336 29 HOH HOH . J 6 HOH A 37 337 99 HOH HOH . J 6 HOH A 38 338 12 HOH HOH . J 6 HOH A 39 339 35 HOH HOH . J 6 HOH A 40 340 15 HOH HOH . J 6 HOH A 41 341 69 HOH HOH . J 6 HOH A 42 342 106 HOH HOH . J 6 HOH A 43 343 89 HOH HOH . J 6 HOH A 44 344 18 HOH HOH . J 6 HOH A 45 345 16 HOH HOH . J 6 HOH A 46 346 25 HOH HOH . J 6 HOH A 47 347 4 HOH HOH . J 6 HOH A 48 348 58 HOH HOH . J 6 HOH A 49 349 105 HOH HOH . J 6 HOH A 50 350 22 HOH HOH . J 6 HOH A 51 351 98 HOH HOH . J 6 HOH A 52 352 50 HOH HOH . J 6 HOH A 53 353 75 HOH HOH . J 6 HOH A 54 354 55 HOH HOH . J 6 HOH A 55 355 136 HOH HOH . J 6 HOH A 56 356 63 HOH HOH . J 6 HOH A 57 357 93 HOH HOH . J 6 HOH A 58 358 87 HOH HOH . J 6 HOH A 59 359 41 HOH HOH . J 6 HOH A 60 360 45 HOH HOH . J 6 HOH A 61 361 117 HOH HOH . J 6 HOH A 62 362 51 HOH HOH . J 6 HOH A 63 363 83 HOH HOH . J 6 HOH A 64 364 81 HOH HOH . J 6 HOH A 65 365 67 HOH HOH . J 6 HOH A 66 366 59 HOH HOH . J 6 HOH A 67 367 82 HOH HOH . J 6 HOH A 68 368 121 HOH HOH . K 6 HOH B 1 301 138 HOH HOH . K 6 HOH B 2 302 133 HOH HOH . K 6 HOH B 3 303 44 HOH HOH . K 6 HOH B 4 304 94 HOH HOH . K 6 HOH B 5 305 128 HOH HOH . K 6 HOH B 6 306 42 HOH HOH . K 6 HOH B 7 307 107 HOH HOH . K 6 HOH B 8 308 46 HOH HOH . K 6 HOH B 9 309 30 HOH HOH . K 6 HOH B 10 310 37 HOH HOH . K 6 HOH B 11 311 110 HOH HOH . K 6 HOH B 12 312 115 HOH HOH . K 6 HOH B 13 313 11 HOH HOH . K 6 HOH B 14 314 80 HOH HOH . K 6 HOH B 15 315 39 HOH HOH . K 6 HOH B 16 316 14 HOH HOH . K 6 HOH B 17 317 85 HOH HOH . K 6 HOH B 18 318 114 HOH HOH . K 6 HOH B 19 319 62 HOH HOH . K 6 HOH B 20 320 120 HOH HOH . K 6 HOH B 21 321 2 HOH HOH . K 6 HOH B 22 322 34 HOH HOH . K 6 HOH B 23 323 49 HOH HOH . K 6 HOH B 24 324 96 HOH HOH . K 6 HOH B 25 325 54 HOH HOH . K 6 HOH B 26 326 13 HOH HOH . K 6 HOH B 27 327 21 HOH HOH . K 6 HOH B 28 328 26 HOH HOH . K 6 HOH B 29 329 125 HOH HOH . K 6 HOH B 30 330 123 HOH HOH . K 6 HOH B 31 331 66 HOH HOH . K 6 HOH B 32 332 119 HOH HOH . K 6 HOH B 33 333 23 HOH HOH . K 6 HOH B 34 334 111 HOH HOH . K 6 HOH B 35 335 17 HOH HOH . K 6 HOH B 36 336 38 HOH HOH . K 6 HOH B 37 337 20 HOH HOH . K 6 HOH B 38 338 68 HOH HOH . K 6 HOH B 39 339 24 HOH HOH . K 6 HOH B 40 340 65 HOH HOH . K 6 HOH B 41 341 61 HOH HOH . K 6 HOH B 42 342 72 HOH HOH . K 6 HOH B 43 343 3 HOH HOH . K 6 HOH B 44 344 7 HOH HOH . K 6 HOH B 45 345 1 HOH HOH . K 6 HOH B 46 346 5 HOH HOH . K 6 HOH B 47 347 116 HOH HOH . K 6 HOH B 48 348 102 HOH HOH . K 6 HOH B 49 349 40 HOH HOH . K 6 HOH B 50 350 91 HOH HOH . K 6 HOH B 51 351 57 HOH HOH . K 6 HOH B 52 352 108 HOH HOH . K 6 HOH B 53 353 130 HOH HOH . K 6 HOH B 54 354 74 HOH HOH . K 6 HOH B 55 355 97 HOH HOH . K 6 HOH B 56 356 135 HOH HOH . K 6 HOH B 57 357 122 HOH HOH . K 6 HOH B 58 358 109 HOH HOH . K 6 HOH B 59 359 112 HOH HOH . K 6 HOH B 60 360 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 2 62.933 -8.722 21.08 1 34.84 ? PA NAP 201 B 1 HETATM 2 O O1A NAP . . . F 2 62.673 -10.002 21.796 1 32.97 ? O1A NAP 201 B 1 HETATM 3 O O2A NAP . . . F 2 61.831 -8.224 20.226 1 36.51 ? O2A NAP 201 B 1 HETATM 4 O O5B NAP . . . F 2 63.27 -7.601 22.167 1 39.14 ? O5B NAP 201 B 1 HETATM 5 C C5B NAP . . . F 2 64.372 -7.799 23.024 1 38.68 ? C5B NAP 201 B 1 HETATM 6 C C4B NAP . . . F 2 64.332 -6.653 24.016 1 35.21 ? C4B NAP 201 B 1 HETATM 7 O O4B NAP . . . F 2 63.18 -6.761 24.833 1 33.67 ? O4B NAP 201 B 1 HETATM 8 C C3B NAP . . . F 2 65.524 -6.66 24.954 1 36.29 ? C3B NAP 201 B 1 HETATM 9 O O3B NAP . . . F 2 66.638 -6.066 24.324 1 36.35 ? O3B NAP 201 B 1 HETATM 10 C C2B NAP . . . F 2 64.944 -5.874 26.114 1 36.9 ? C2B NAP 201 B 1 HETATM 11 O O2B NAP . . . F 2 64.795 -4.531 25.727 1 37.31 ? O2B NAP 201 B 1 HETATM 12 C C1B NAP . . . F 2 63.521 -6.407 26.16 1 36.73 ? C1B NAP 201 B 1 HETATM 13 N N9A NAP . . . F 2 63.446 -7.561 27.082 1 37.15 ? N9A NAP 201 B 1 HETATM 14 C C8A NAP . . . F 2 63.603 -8.894 26.791 1 37.21 ? C8A NAP 201 B 1 HETATM 15 N N7A NAP . . . F 2 63.446 -9.589 27.942 1 37.36 ? N7A NAP 201 B 1 HETATM 16 C C5A NAP . . . F 2 63.187 -8.733 28.953 1 38.18 ? C5A NAP 201 B 1 HETATM 17 C C6A NAP . . . F 2 62.946 -8.91 30.317 1 38.58 ? C6A NAP 201 B 1 HETATM 18 N N6A NAP . . . F 2 62.942 -10.126 30.869 1 38.54 ? N6A NAP 201 B 1 HETATM 19 N N1A NAP . . . F 2 62.701 -7.804 31.101 1 38.08 ? N1A NAP 201 B 1 HETATM 20 C C2A NAP . . . F 2 62.696 -6.54 30.556 1 36.8 ? C2A NAP 201 B 1 HETATM 21 N N3A NAP . . . F 2 62.938 -6.375 29.208 1 37.63 ? N3A NAP 201 B 1 HETATM 22 C C4A NAP . . . F 2 63.185 -7.455 28.422 1 37.31 ? C4A NAP 201 B 1 HETATM 23 O O3 NAP . . . F 2 64.314 -8.802 20.26 1 37.22 ? O3 NAP 201 B 1 HETATM 24 P PN NAP . . . F 2 65.033 -9.963 19.395 1 39.03 ? PN NAP 201 B 1 HETATM 25 O O1N NAP . . . F 2 66.324 -9.374 18.938 1 39.74 ? O1N NAP 201 B 1 HETATM 26 O O2N NAP . . . F 2 65.036 -11.254 20.131 1 38.16 ? O2N NAP 201 B 1 HETATM 27 O O5D NAP . . . F 2 63.958 -10.141 18.214 1 39.25 ? O5D NAP 201 B 1 HETATM 28 C C5D NAP . . . F 2 63.763 -9.135 17.243 1 41.55 ? C5D NAP 201 B 1 HETATM 29 C C4D NAP . . . F 2 63.864 -9.806 15.877 1 41.94 ? C4D NAP 201 B 1 HETATM 30 O O4D NAP . . . F 2 62.801 -10.736 15.731 1 37.42 ? O4D NAP 201 B 1 HETATM 31 C C3D NAP . . . F 2 63.743 -8.794 14.748 1 45.51 ? C3D NAP 201 B 1 HETATM 32 O O3D NAP . . . F 2 64.626 -9.185 13.716 1 43.25 ? O3D NAP 201 B 1 HETATM 33 C C2D NAP . . . F 2 62.323 -8.958 14.258 1 46.24 ? C2D NAP 201 B 1 HETATM 34 O O2D NAP . . . F 2 62.274 -8.7 12.87 1 49.27 ? O2D NAP 201 B 1 HETATM 35 C C1D NAP . . . F 2 62.067 -10.433 14.55 1 42.21 ? C1D NAP 201 B 1 HETATM 36 N N1N NAP . . . F 2 60.644 -10.768 14.748 1 38.38 ? N1N NAP 201 B 1 HETATM 37 C C2N NAP . . . F 2 60.122 -11.791 14.016 1 35.05 ? C2N NAP 201 B 1 HETATM 38 C C3N NAP . . . F 2 58.8 -12.168 14.183 1 35.68 ? C3N NAP 201 B 1 HETATM 39 C C7N NAP . . . F 2 58.305 -13.37 13.443 1 33.77 ? C7N NAP 201 B 1 HETATM 40 O O7N NAP . . . F 2 57.252 -14.08 14.014 1 35.63 ? O7N NAP 201 B 1 HETATM 41 N N7N NAP . . . F 2 58.867 -13.733 12.28 1 34.13 ? N7N NAP 201 B 1 HETATM 42 C C4N NAP . . . F 2 57.986 -11.507 15.11 1 35.79 ? C4N NAP 201 B 1 HETATM 43 C C5N NAP . . . F 2 58.546 -10.474 15.868 1 38.85 ? C5N NAP 201 B 1 HETATM 44 C C6N NAP . . . F 2 59.882 -10.109 15.68 1 36.56 ? C6N NAP 201 B 1 HETATM 45 P P2B NAP . . . F 2 65.915 -3.393 25.882 1 37.26 ? P2B NAP 201 B 1 HETATM 46 O O1X NAP . . . F 2 66.993 -3.578 24.855 1 33.49 ? O1X NAP 201 B 1 HETATM 47 O O2X NAP . . . F 2 65.244 -2.073 25.604 1 35.01 ? O2X NAP 201 B 1 HETATM 48 O O3X NAP . . . F 2 66.406 -3.484 27.314 1 38.85 ? O3X NAP 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #