data_7RGO # _model_server_result.job_id sraQBj8Bb4JLuifuz5laxg _model_server_result.datetime_utc '2024-11-24 15:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rgo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":204}' # _entry.id 7RGO # _exptl.entry_id 7RGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 419.907 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-chloro-3'-[(2S)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl][1,1'-biphenyl]-4-carboxamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RGO _cell.length_a 98.855 _cell.length_b 98.855 _cell.length_c 43.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _chem_comp.formula 'C23 H22 Cl N5 O' _chem_comp.formula_weight 419.907 _chem_comp.id 4SI _chem_comp.mon_nstd_flag . _chem_comp.name "4'-chloro-3'-[(2S)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl][1,1'-biphenyl]-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C21 4SI doub 1 n n C21 C20 4SI sing 2 n n C21 N22 4SI sing 3 n n C01 C02 4SI sing 4 n n C02 C03 4SI sing 5 n n C20 C19 4SI doub 6 n y C20 C24 4SI sing 7 n y C19 C18 4SI sing 8 n y C24 C25 4SI doub 9 n y C26 C27 4SI doub 10 n y C26 C16 4SI sing 11 n y C18 C17 4SI doub 12 n y C25 C17 4SI sing 13 n y C27 C28 4SI sing 14 n y C17 C16 4SI sing 15 n n C16 C15 4SI doub 16 n y N04 C03 4SI doub 17 n y N04 C05 4SI sing 18 n y C03 C10 4SI sing 19 n y C28 CL29 4SI sing 20 n n C28 C14 4SI doub 21 n y C15 C14 4SI sing 22 n y C14 C13 4SI sing 23 n n N06 C05 4SI sing 24 n n C05 N07 4SI doub 25 n y C10 C11 4SI sing 26 n n C10 C08 4SI doub 27 n y C11 C12 4SI trip 28 n n C12 C13 4SI sing 29 n n C13 C30 4SI sing 30 n n N07 C08 4SI sing 31 n y C08 N09 4SI sing 32 n n C13 H1 4SI sing 33 n n C01 H2 4SI sing 34 n n C01 H3 4SI sing 35 n n C01 H4 4SI sing 36 n n C02 H5 4SI sing 37 n n C02 H6 4SI sing 38 n n C15 H7 4SI sing 39 n n C18 H8 4SI sing 40 n n C19 H9 4SI sing 41 n n C24 H10 4SI sing 42 n n C25 H11 4SI sing 43 n n C26 H12 4SI sing 44 n n C27 H13 4SI sing 45 n n C30 H14 4SI sing 46 n n C30 H15 4SI sing 47 n n C30 H16 4SI sing 48 n n N06 H17 4SI sing 49 n n N06 H18 4SI sing 50 n n N09 H19 4SI sing 51 n n N09 H20 4SI sing 52 n n N22 H21 4SI sing 53 n n N22 H22 4SI sing 54 n n # _atom_sites.entry_id 7RGO _atom_sites.fract_transf_matrix[1][1] 0.010116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 201 NAP NAP . D 3 GOL A 1 202 143 GOL GOL . E 4 4SI A 1 203 3 4SI DRG . F 2 NAP B 1 201 202 NAP NAP . G 5 SO4 B 1 202 1 SO4 SO4 . H 5 SO4 B 1 203 2 SO4 SO4 . I 4 4SI B 1 204 4 4SI DRG . J 6 HOH A 1 301 47 HOH HOH . J 6 HOH A 2 302 100 HOH HOH . J 6 HOH A 3 303 132 HOH HOH . J 6 HOH A 4 304 103 HOH HOH . J 6 HOH A 5 305 76 HOH HOH . J 6 HOH A 6 306 127 HOH HOH . J 6 HOH A 7 307 60 HOH HOH . J 6 HOH A 8 308 77 HOH HOH . J 6 HOH A 9 309 10 HOH HOH . J 6 HOH A 10 310 64 HOH HOH . J 6 HOH A 11 311 6 HOH HOH . J 6 HOH A 12 312 78 HOH HOH . J 6 HOH A 13 313 113 HOH HOH . J 6 HOH A 14 314 31 HOH HOH . J 6 HOH A 15 315 95 HOH HOH . J 6 HOH A 16 316 48 HOH HOH . J 6 HOH A 17 317 43 HOH HOH . J 6 HOH A 18 318 8 HOH HOH . J 6 HOH A 19 319 73 HOH HOH . J 6 HOH A 20 320 104 HOH HOH . J 6 HOH A 21 321 9 HOH HOH . J 6 HOH A 22 322 118 HOH HOH . J 6 HOH A 23 323 33 HOH HOH . J 6 HOH A 24 324 36 HOH HOH . J 6 HOH A 25 325 19 HOH HOH . J 6 HOH A 26 326 32 HOH HOH . J 6 HOH A 27 327 27 HOH HOH . J 6 HOH A 28 328 126 HOH HOH . J 6 HOH A 29 329 92 HOH HOH . J 6 HOH A 30 330 71 HOH HOH . J 6 HOH A 31 331 88 HOH HOH . J 6 HOH A 32 332 70 HOH HOH . J 6 HOH A 33 333 124 HOH HOH . J 6 HOH A 34 334 129 HOH HOH . J 6 HOH A 35 335 28 HOH HOH . J 6 HOH A 36 336 29 HOH HOH . J 6 HOH A 37 337 99 HOH HOH . J 6 HOH A 38 338 12 HOH HOH . J 6 HOH A 39 339 35 HOH HOH . J 6 HOH A 40 340 15 HOH HOH . J 6 HOH A 41 341 69 HOH HOH . J 6 HOH A 42 342 106 HOH HOH . J 6 HOH A 43 343 89 HOH HOH . J 6 HOH A 44 344 18 HOH HOH . J 6 HOH A 45 345 16 HOH HOH . J 6 HOH A 46 346 25 HOH HOH . J 6 HOH A 47 347 4 HOH HOH . J 6 HOH A 48 348 58 HOH HOH . J 6 HOH A 49 349 105 HOH HOH . J 6 HOH A 50 350 22 HOH HOH . J 6 HOH A 51 351 98 HOH HOH . J 6 HOH A 52 352 50 HOH HOH . J 6 HOH A 53 353 75 HOH HOH . J 6 HOH A 54 354 55 HOH HOH . J 6 HOH A 55 355 136 HOH HOH . J 6 HOH A 56 356 63 HOH HOH . J 6 HOH A 57 357 93 HOH HOH . J 6 HOH A 58 358 87 HOH HOH . J 6 HOH A 59 359 41 HOH HOH . J 6 HOH A 60 360 45 HOH HOH . J 6 HOH A 61 361 117 HOH HOH . J 6 HOH A 62 362 51 HOH HOH . J 6 HOH A 63 363 83 HOH HOH . J 6 HOH A 64 364 81 HOH HOH . J 6 HOH A 65 365 67 HOH HOH . J 6 HOH A 66 366 59 HOH HOH . J 6 HOH A 67 367 82 HOH HOH . J 6 HOH A 68 368 121 HOH HOH . K 6 HOH B 1 301 138 HOH HOH . K 6 HOH B 2 302 133 HOH HOH . K 6 HOH B 3 303 44 HOH HOH . K 6 HOH B 4 304 94 HOH HOH . K 6 HOH B 5 305 128 HOH HOH . K 6 HOH B 6 306 42 HOH HOH . K 6 HOH B 7 307 107 HOH HOH . K 6 HOH B 8 308 46 HOH HOH . K 6 HOH B 9 309 30 HOH HOH . K 6 HOH B 10 310 37 HOH HOH . K 6 HOH B 11 311 110 HOH HOH . K 6 HOH B 12 312 115 HOH HOH . K 6 HOH B 13 313 11 HOH HOH . K 6 HOH B 14 314 80 HOH HOH . K 6 HOH B 15 315 39 HOH HOH . K 6 HOH B 16 316 14 HOH HOH . K 6 HOH B 17 317 85 HOH HOH . K 6 HOH B 18 318 114 HOH HOH . K 6 HOH B 19 319 62 HOH HOH . K 6 HOH B 20 320 120 HOH HOH . K 6 HOH B 21 321 2 HOH HOH . K 6 HOH B 22 322 34 HOH HOH . K 6 HOH B 23 323 49 HOH HOH . K 6 HOH B 24 324 96 HOH HOH . K 6 HOH B 25 325 54 HOH HOH . K 6 HOH B 26 326 13 HOH HOH . K 6 HOH B 27 327 21 HOH HOH . K 6 HOH B 28 328 26 HOH HOH . K 6 HOH B 29 329 125 HOH HOH . K 6 HOH B 30 330 123 HOH HOH . K 6 HOH B 31 331 66 HOH HOH . K 6 HOH B 32 332 119 HOH HOH . K 6 HOH B 33 333 23 HOH HOH . K 6 HOH B 34 334 111 HOH HOH . K 6 HOH B 35 335 17 HOH HOH . K 6 HOH B 36 336 38 HOH HOH . K 6 HOH B 37 337 20 HOH HOH . K 6 HOH B 38 338 68 HOH HOH . K 6 HOH B 39 339 24 HOH HOH . K 6 HOH B 40 340 65 HOH HOH . K 6 HOH B 41 341 61 HOH HOH . K 6 HOH B 42 342 72 HOH HOH . K 6 HOH B 43 343 3 HOH HOH . K 6 HOH B 44 344 7 HOH HOH . K 6 HOH B 45 345 1 HOH HOH . K 6 HOH B 46 346 5 HOH HOH . K 6 HOH B 47 347 116 HOH HOH . K 6 HOH B 48 348 102 HOH HOH . K 6 HOH B 49 349 40 HOH HOH . K 6 HOH B 50 350 91 HOH HOH . K 6 HOH B 51 351 57 HOH HOH . K 6 HOH B 52 352 108 HOH HOH . K 6 HOH B 53 353 130 HOH HOH . K 6 HOH B 54 354 74 HOH HOH . K 6 HOH B 55 355 97 HOH HOH . K 6 HOH B 56 356 135 HOH HOH . K 6 HOH B 57 357 122 HOH HOH . K 6 HOH B 58 358 109 HOH HOH . K 6 HOH B 59 359 112 HOH HOH . K 6 HOH B 60 360 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 4SI . . . I 4 56.157 -7.476 13.034 1 53.32 ? C14 4SI 204 B 1 HETATM 2 C C11 4SI . . . I 4 54.859 -10.719 13.292 1 39.59 ? C11 4SI 204 B 1 HETATM 3 C C10 4SI . . . I 4 54.137 -11.923 13.009 1 34.51 ? C10 4SI 204 B 1 HETATM 4 C C12 4SI . . . I 4 55.447 -9.752 13.548 1 40.55 ? C12 4SI 204 B 1 HETATM 5 C C13 4SI . . . I 4 56.208 -8.516 13.982 1 48.49 ? C13 4SI 204 B 1 HETATM 6 C C01 4SI . . . I 4 53.038 -10.478 10.263 1 37.02 ? C01 4SI 204 B 1 HETATM 7 C C02 4SI . . . I 4 54.2 -11.41 10.637 1 37.05 ? C02 4SI 204 B 1 HETATM 8 C C03 4SI . . . I 4 53.819 -12.247 11.702 1 35.51 ? C03 4SI 204 B 1 HETATM 9 C C05 4SI . . . I 4 52.767 -14.218 12.455 1 30.2 ? C05 4SI 204 B 1 HETATM 10 C C08 4SI . . . I 4 53.75 -12.798 14.025 1 31.9 ? C08 4SI 204 B 1 HETATM 11 C C15 4SI . . . I 4 54.944 -7.182 12.402 1 53.43 ? C15 4SI 204 B 1 HETATM 12 C C16 4SI . . . I 4 54.889 -6.132 11.476 1 62.42 ? C16 4SI 204 B 1 HETATM 13 C C17 4SI . . . I 4 53.732 -5.81 10.773 1 64.47 ? C17 4SI 204 B 1 HETATM 14 C C18 4SI . . . I 4 52.41 -5.967 11.209 1 58.42 ? C18 4SI 204 B 1 HETATM 15 C C19 4SI . . . I 4 51.361 -5.606 10.35 1 60.53 ? C19 4SI 204 B 1 HETATM 16 C C20 4SI . . . I 4 51.645 -5.104 9.077 1 66.32 ? C20 4SI 204 B 1 HETATM 17 C C21 4SI . . . I 4 50.687 -4.743 8.131 1 68.2 ? C21 4SI 204 B 1 HETATM 18 C C24 4SI . . . I 4 52.959 -4.98 8.666 1 72.56 ? C24 4SI 204 B 1 HETATM 19 C C25 4SI . . . I 4 53.994 -5.327 9.504 1 69.96 ? C25 4SI 204 B 1 HETATM 20 C C26 4SI . . . I 4 56.035 -5.402 11.152 1 55.02 ? C26 4SI 204 B 1 HETATM 21 C C27 4SI . . . I 4 57.234 -5.686 11.779 1 53.67 ? C27 4SI 204 B 1 HETATM 22 C C28 4SI . . . I 4 57.301 -6.715 12.717 1 52.96 ? C28 4SI 204 B 1 HETATM 23 C C30 4SI . . . I 4 55.558 -8.084 15.284 1 41.91 ? C30 4SI 204 B 1 HETATM 24 N N04 4SI . . . I 4 53.14 -13.387 11.466 1 33.86 ? N04 4SI 204 B 1 HETATM 25 N N06 4SI . . . I 4 52.086 -15.321 12.143 1 34.63 ? N06 4SI 204 B 1 HETATM 26 N N07 4SI . . . I 4 53.079 -13.92 13.742 1 30.16 ? N07 4SI 204 B 1 HETATM 27 N N09 4SI . . . I 4 54.067 -12.462 15.279 1 36.32 ? N09 4SI 204 B 1 HETATM 28 N N22 4SI . . . I 4 50.659 -5.556 7.057 1 59.93 ? N22 4SI 204 B 1 HETATM 29 O O23 4SI . . . I 4 50.007 -3.724 8.239 1 62.24 ? O23 4SI 204 B 1 HETATM 30 CL CL29 4SI . . . I 4 58.863 -7.001 13.444 1 54.73 ? CL29 4SI 204 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #