data_7RGQ # _model_server_result.job_id Qg5RhCZhJSzhzUfkTbui6w _model_server_result.datetime_utc '2024-12-26 17:01:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":603}' # _entry.id 7RGQ # _exptl.entry_id 7RGQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RGQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 P N N ? 4 U N N ? 4 Z N N ? 4 EA N N ? 4 JA N N ? 4 OA N N ? 4 TA N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 270 n n P O2P IMP sing 271 n n P O3P IMP sing 272 n n P O5' IMP sing 273 n n O2P HOP2 IMP sing 274 n n O3P HOP3 IMP sing 275 n n O5' C5' IMP sing 276 n n C5' C4' IMP sing 277 n n C5' "H5'1" IMP sing 278 n n C5' "H5'2" IMP sing 279 n n C4' O4' IMP sing 280 n n C4' C3' IMP sing 281 n n C4' H4' IMP sing 282 n n O4' C1' IMP sing 283 n n C3' O3' IMP sing 284 n n C3' C2' IMP sing 285 n n C3' H3' IMP sing 286 n n O3' HO3' IMP sing 287 n n C2' O2' IMP sing 288 n n C2' C1' IMP sing 289 n n C2' H2' IMP sing 290 n n O2' HO2' IMP sing 291 n n C1' N9 IMP sing 292 n n C1' H1' IMP sing 293 n n N9 C8 IMP sing 294 n y N9 C4 IMP sing 295 n y C8 N7 IMP doub 296 n y C8 H8 IMP sing 297 n n N7 C5 IMP sing 298 n y C5 C6 IMP sing 299 n n C5 C4 IMP doub 300 n y C6 O6 IMP doub 301 n n C6 N1 IMP sing 302 n n N1 C2 IMP sing 303 n n N1 HN1 IMP sing 304 n n C2 N3 IMP doub 305 n n C2 H2 IMP sing 306 n n N3 C4 IMP sing 307 n n # _atom_sites.entry_id 7RGQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GTP A 1 601 601 GTP GTP . J 3 NAD A 1 602 602 NAD NAD . K 4 IMP A 1 603 603 IMP IMP . L 5 ATP A 1 604 604 ATP ATP . M 2 GTP A 1 605 605 GTP GTP . N 2 GTP B 1 601 601 GTP GTP . O 3 NAD B 1 602 602 NAD NAD . P 4 IMP B 1 603 603 IMP IMP . Q 5 ATP B 1 604 604 ATP ATP . R 2 GTP B 1 605 605 GTP GTP . S 2 GTP C 1 601 601 GTP GTP . T 3 NAD C 1 602 602 NAD NAD . U 4 IMP C 1 603 603 IMP IMP . V 5 ATP C 1 604 604 ATP ATP . W 2 GTP C 1 605 605 GTP GTP . X 2 GTP D 1 601 601 GTP GTP . Y 3 NAD D 1 602 602 NAD NAD . Z 4 IMP D 1 603 603 IMP IMP . AA 5 ATP D 1 604 604 ATP ATP . BA 2 GTP D 1 605 605 GTP GTP . CA 2 GTP E 1 601 601 GTP GTP . DA 3 NAD E 1 602 602 NAD NAD . EA 4 IMP E 1 603 603 IMP IMP . FA 5 ATP E 1 604 604 ATP ATP . GA 2 GTP E 1 605 605 GTP GTP . HA 2 GTP F 1 601 601 GTP GTP . IA 3 NAD F 1 602 602 NAD NAD . JA 4 IMP F 1 603 603 IMP IMP . KA 5 ATP F 1 604 604 ATP ATP . LA 2 GTP F 1 605 605 GTP GTP . MA 2 GTP G 1 601 601 GTP GTP . NA 3 NAD G 1 602 602 NAD NAD . OA 4 IMP G 1 603 603 IMP IMP . PA 5 ATP G 1 604 604 ATP ATP . QA 2 GTP G 1 605 605 GTP GTP . RA 2 GTP H 1 601 601 GTP GTP . SA 3 NAD H 1 602 602 NAD NAD . TA 4 IMP H 1 603 603 IMP IMP . UA 5 ATP H 1 604 604 ATP ATP . VA 2 GTP H 1 605 605 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . TA 4 206.498 193.52 201.895 1 45.9 ? P IMP 603 H 1 HETATM 2 O O1P IMP . . . TA 4 206.397 193.736 200.43 1 45.9 ? O1P IMP 603 H 1 HETATM 3 O O2P IMP . . . TA 4 205.475 194.325 202.6 1 45.9 ? O2P IMP 603 H 1 HETATM 4 O O3P IMP . . . TA 4 206.241 192.097 202.191 1 45.9 ? O3P IMP 603 H 1 HETATM 5 O O5' IMP . . . TA 4 207.94 193.96 202.427 1 45.9 ? O5' IMP 603 H 1 HETATM 6 C C5' IMP . . . TA 4 209.106 193.228 202.037 1 45.9 ? C5' IMP 603 H 1 HETATM 7 C C4' IMP . . . TA 4 209.559 192.285 203.179 1 45.9 ? C4' IMP 603 H 1 HETATM 8 O O4' IMP . . . TA 4 209.406 190.908 202.793 1 45.9 ? O4' IMP 603 H 1 HETATM 9 C C3' IMP . . . TA 4 211.061 192.349 203.419 1 45.9 ? C3' IMP 603 H 1 HETATM 10 O O3' IMP . . . TA 4 211.508 193.539 204.063 1 45.9 ? O3' IMP 603 H 1 HETATM 11 C C2' IMP . . . TA 4 211.328 191.06 204.191 1 45.9 ? C2' IMP 603 H 1 HETATM 12 O O2' IMP . . . TA 4 210.935 191.179 205.557 1 45.9 ? O2' IMP 603 H 1 HETATM 13 C C1' IMP . . . TA 4 210.354 190.081 203.498 1 45.9 ? C1' IMP 603 H 1 HETATM 14 N N9 IMP . . . TA 4 210.984 189.186 202.532 1 45.9 ? N9 IMP 603 H 1 HETATM 15 C C8 IMP . . . TA 4 211.608 189.515 201.343 1 45.9 ? C8 IMP 603 H 1 HETATM 16 N N7 IMP . . . TA 4 211.89 188.447 200.6 1 45.9 ? N7 IMP 603 H 1 HETATM 17 C C5 IMP . . . TA 4 211.411 187.386 201.343 1 45.9 ? C5 IMP 603 H 1 HETATM 18 C C6 IMP . . . TA 4 211.341 185.965 200.985 1 45.9 ? C6 IMP 603 H 1 HETATM 19 O O6 IMP . . . TA 4 211.727 185.471 199.943 1 45.9 ? O6 IMP 603 H 1 HETATM 20 N N1 IMP . . . TA 4 210.753 185.21 201.946 1 45.9 ? N1 IMP 603 H 1 HETATM 21 C C2 IMP . . . TA 4 210.289 185.723 203.135 1 45.9 ? C2 IMP 603 H 1 HETATM 22 N N3 IMP . . . TA 4 210.332 187.005 203.464 1 45.9 ? N3 IMP 603 H 1 HETATM 23 C C4 IMP . . . TA 4 210.908 187.835 202.522 1 45.9 ? C4 IMP 603 H 1 HETATM 24 H "H5'1" IMP . . . TA 4 208.933 192.658 201.115 1 45.9 ? "H5'1" IMP 603 H 1 HETATM 25 H "H5'2" IMP . . . TA 4 209.911 193.943 201.826 1 45.9 ? "H5'2" IMP 603 H 1 HETATM 26 H H4' IMP . . . TA 4 209.018 192.496 204.11 1 45.9 ? H4' IMP 603 H 1 HETATM 27 H H3' IMP . . . TA 4 211.558 192.276 202.444 1 45.9 ? H3' IMP 603 H 1 HETATM 28 H HO3' IMP . . . TA 4 211.235 193.539 204.997 1 45.9 ? HO3' IMP 603 H 1 HETATM 29 H H2' IMP . . . TA 4 212.374 190.742 204.099 1 45.9 ? H2' IMP 603 H 1 HETATM 30 H HO2' IMP . . . TA 4 211.136 192.073 205.885 1 45.9 ? HO2' IMP 603 H 1 HETATM 31 H H1' IMP . . . TA 4 209.841 189.46 204.241 1 45.9 ? H1' IMP 603 H 1 HETATM 32 H H8 IMP . . . TA 4 211.807 190.542 201.068 1 45.9 ? H8 IMP 603 H 1 HETATM 33 H HN1 IMP . . . TA 4 210.626 184.231 201.717 1 45.9 ? HN1 IMP 603 H 1 HETATM 34 H H2 IMP . . . TA 4 209.857 184.979 203.791 1 45.9 ? H2 IMP 603 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 197 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #