data_7RGQ
#
_model_server_result.job_id            G-qqByI5Dk44zjROkRoVQw 
_model_server_result.datetime_utc      '2024-12-26 16:40:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rgq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":604}' 
#
_entry.id    7RGQ 
#
_exptl.entry_id    7RGQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RGQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 Q N N 
? 5 V N N 
? 5 AA N N 
? 5 FA N N 
? 5 KA N N 
? 5 PA N N 
? 5 UA N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7RGQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GTP A 1 601 601 GTP GTP . 
J 3 NAD A 1 602 602 NAD NAD . 
K 4 IMP A 1 603 603 IMP IMP . 
L 5 ATP A 1 604 604 ATP ATP . 
M 2 GTP A 1 605 605 GTP GTP . 
N 2 GTP B 1 601 601 GTP GTP . 
O 3 NAD B 1 602 602 NAD NAD . 
P 4 IMP B 1 603 603 IMP IMP . 
Q 5 ATP B 1 604 604 ATP ATP . 
R 2 GTP B 1 605 605 GTP GTP . 
S 2 GTP C 1 601 601 GTP GTP . 
T 3 NAD C 1 602 602 NAD NAD . 
U 4 IMP C 1 603 603 IMP IMP . 
V 5 ATP C 1 604 604 ATP ATP . 
W 2 GTP C 1 605 605 GTP GTP . 
X 2 GTP D 1 601 601 GTP GTP . 
Y 3 NAD D 1 602 602 NAD NAD . 
Z 4 IMP D 1 603 603 IMP IMP . 
AA 5 ATP D 1 604 604 ATP ATP . 
BA 2 GTP D 1 605 605 GTP GTP . 
CA 2 GTP E 1 601 601 GTP GTP . 
DA 3 NAD E 1 602 602 NAD NAD . 
EA 4 IMP E 1 603 603 IMP IMP . 
FA 5 ATP E 1 604 604 ATP ATP . 
GA 2 GTP E 1 605 605 GTP GTP . 
HA 2 GTP F 1 601 601 GTP GTP . 
IA 3 NAD F 1 602 602 NAD NAD . 
JA 4 IMP F 1 603 603 IMP IMP . 
KA 5 ATP F 1 604 604 ATP ATP . 
LA 2 GTP F 1 605 605 GTP GTP . 
MA 2 GTP G 1 601 601 GTP GTP . 
NA 3 NAD G 1 602 602 NAD NAD . 
OA 4 IMP G 1 603 603 IMP IMP . 
PA 5 ATP G 1 604 604 ATP ATP . 
QA 2 GTP G 1 605 605 GTP GTP . 
RA 2 GTP H 1 601 601 GTP GTP . 
SA 3 NAD H 1 602 602 NAD NAD . 
TA 4 IMP H 1 603 603 IMP IMP . 
UA 5 ATP H 1 604 604 ATP ATP . 
VA 2 GTP H 1 605 605 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . V 5 147.489 142.597 185.866 1 57.34 ? PG ATP 604 C 1 
HETATM 2 O O1G ATP . . . V 5 146.184 142.925 186.48 1 57.34 ? O1G ATP 604 C 1 
HETATM 3 O O2G ATP . . . V 5 148.499 142.661 186.943 1 57.34 ? O2G ATP 604 C 1 
HETATM 4 O O3G ATP . . . V 5 147.869 143.642 184.895 1 57.34 ? O3G ATP 604 C 1 
HETATM 5 P PB ATP . . . V 5 146.787 140.783 183.933 1 57.34 ? PB ATP 604 C 1 
HETATM 6 O O1B ATP . . . V 5 147.769 140.107 183.052 1 57.34 ? O1B ATP 604 C 1 
HETATM 7 O O2B ATP . . . V 5 146.102 141.913 183.234 1 57.34 ? O2B ATP 604 C 1 
HETATM 8 O O3B ATP . . . V 5 147.511 141.161 185.274 1 57.34 ? O3B ATP 604 C 1 
HETATM 9 P PA ATP . . . V 5 144.547 139.334 183.665 1 57.34 ? PA ATP 604 C 1 
HETATM 10 O O1A ATP . . . V 5 143.398 140.276 183.708 1 57.34 ? O1A ATP 604 C 1 
HETATM 11 O O2A ATP . . . V 5 144.862 139.071 182.245 1 57.34 ? O2A ATP 604 C 1 
HETATM 12 O O3A ATP . . . V 5 145.766 139.774 184.528 1 57.34 ? O3A ATP 604 C 1 
HETATM 13 O O5' ATP . . . V 5 144.197 137.973 184.45 1 57.34 ? O5' ATP 604 C 1 
HETATM 14 C C5' ATP . . . V 5 143.634 138.05 185.764 1 57.34 ? C5' ATP 604 C 1 
HETATM 15 C C4' ATP . . . V 5 143.27 136.64 186.33 1 57.34 ? C4' ATP 604 C 1 
HETATM 16 O O4' ATP . . . V 5 142.9 135.75 185.259 1 57.34 ? O4' ATP 604 C 1 
HETATM 17 C C3' ATP . . . V 5 144.436 135.903 187.033 1 57.34 ? C3' ATP 604 C 1 
HETATM 18 O O3' ATP . . . V 5 143.938 134.871 187.881 1 57.34 ? O3' ATP 604 C 1 
HETATM 19 C C2' ATP . . . V 5 145.163 135.315 185.843 1 57.34 ? C2' ATP 604 C 1 
HETATM 20 O O2' ATP . . . V 5 146.022 134.209 186.143 1 57.34 ? O2' ATP 604 C 1 
HETATM 21 C C1' ATP . . . V 5 144.038 134.954 184.857 1 57.34 ? C1' ATP 604 C 1 
HETATM 22 N N9 ATP . . . V 5 144.358 135.193 183.46 1 57.34 ? N9 ATP 604 C 1 
HETATM 23 C C8 ATP . . . V 5 145.533 135.676 182.879 1 57.34 ? C8 ATP 604 C 1 
HETATM 24 N N7 ATP . . . V 5 145.518 135.603 181.539 1 57.34 ? N7 ATP 604 C 1 
HETATM 25 C C5 ATP . . . V 5 144.267 135.143 181.304 1 57.34 ? C5 ATP 604 C 1 
HETATM 26 C C6 ATP . . . V 5 143.625 134.936 180.094 1 57.34 ? C6 ATP 604 C 1 
HETATM 27 N N6 ATP . . . V 5 144.204 135.068 178.902 1 57.34 ? N6 ATP 604 C 1 
HETATM 28 N N1 ATP . . . V 5 142.402 134.49 180.015 1 57.34 ? N1 ATP 604 C 1 
HETATM 29 C C2 ATP . . . V 5 141.836 134.218 181.188 1 57.34 ? C2 ATP 604 C 1 
HETATM 30 N N3 ATP . . . V 5 142.338 134.395 182.407 1 57.34 ? N3 ATP 604 C 1 
HETATM 31 C C4 ATP . . . V 5 143.564 134.892 182.424 1 57.34 ? C4 ATP 604 C 1 
HETATM 32 H "H5'1" ATP . . . V 5 142.719 138.652 185.736 1 57.34 ? "H5'1" ATP 604 C 1 
HETATM 33 H "H5'2" ATP . . . V 5 144.339 138.542 186.444 1 57.34 ? "H5'2" ATP 604 C 1 
HETATM 34 H H4' ATP . . . V 5 142.436 136.76 187.031 1 57.34 ? H4' ATP 604 C 1 
HETATM 35 H H3' ATP . . . V 5 145.092 136.582 187.59 1 57.34 ? H3' ATP 604 C 1 
HETATM 36 H HO3' ATP . . . V 5 144.657 134.656 188.498 1 57.34 ? HO3' ATP 604 C 1 
HETATM 37 H H2' ATP . . . V 5 145.762 136.14 185.439 1 57.34 ? H2' ATP 604 C 1 
HETATM 38 H HO2' ATP . . . V 5 146.387 134.334 187.035 1 57.34 ? HO2' ATP 604 C 1 
HETATM 39 H H1' ATP . . . V 5 143.779 133.894 184.956 1 57.34 ? H1' ATP 604 C 1 
HETATM 40 H H8 ATP . . . V 5 146.36 136.046 183.469 1 57.34 ? H8 ATP 604 C 1 
HETATM 41 H HN61 ATP . . . V 5 143.667 134.584 178.195 1 57.34 ? HN61 ATP 604 C 1 
HETATM 42 H HN62 ATP . . . V 5 145.196 134.873 178.933 1 57.34 ? HN62 ATP 604 C 1 
HETATM 43 H H2 ATP . . . V 5 140.873 133.713 181.142 1 57.34 ? H2 ATP 604 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#