data_7RHQ # _model_server_result.job_id V_6Ly8snR9jHhb0Kl58P4Q _model_server_result.datetime_utc '2024-11-22 22:01:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1504}' # _entry.id 7RHQ # _exptl.entry_id 7RHQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RHQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 1503 NAG 4 n D NAG 2 B 2 NAG A 1504 NAG 4 n E NAG 1 D 1 NAG A 1507 NAG 4 n E NAG 2 D 2 NAG A 1508 NAG 4 n F NAG 1 E 1 NAG G 244 NAG 4 n F NAG 2 E 2 NAG G 245 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 193 A CYS 193 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 224 A CYS 224 1_555 A SG CYS 317 A CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 286 A CYS 286 1_555 A SG CYS 294 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 13 G CYS 48 1_555 C SG CYS 93 G CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 20 G CYS 55 1_555 C SG CYS 26 G CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 37 G CYS 72 1_555 C SG CYS 74 G CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 70 G CYS 105 1_555 C SG CYS 111 G CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 95 G CYS 130 1_555 C SG CYS 101 G CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 131 G CYS 166 1_555 C SG CYS 187 G CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 138 G CYS 173 1_555 C SG CYS 144 G CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 C SG CYS 155 G CYS 190 1_555 C SG CYS 168 G CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 C SG CYS 164 G CYS 199 1_555 C SG CYS 208 G CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 C SG CYS 189 G CYS 224 1_555 C SG CYS 197 G CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 302 A ASN 302 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 339 A ASN 339 1_555 I C1 NAG . A NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 865 A ASN 865 1_555 J C1 NAG . A NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 A ND2 ASN 989 A ASN 989 1_555 E C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 B N CYS 1 C CYS 24 1_555 O C1 PLM . C PLM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 B C GLY 192 C GLY 197 1_555 K O1 CLR . C CLR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale7 C ND2 ASN 82 G ASN 117 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 E O4 NAG . D NAG 1 1_555 E C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale10 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 B OE1 GLU 66 C GLU 89 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc2 B OE2 GLU 66 C GLU 89 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc3 B OE2 GLU 67 C GLU 90 1_555 M CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 B OE1 GLU 67 C GLU 90 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 B OE2 GLU 67 C GLU 90 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc6 B OD1 ASP 72 C ASP 95 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 B OD2 ASP 72 C ASP 95 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc8 B O THR 102 C THR 125 1_555 N CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc9 B OE2 GLU 103 C GLU 126 1_555 M CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc10 B OD1 ASP 106 C ASP 129 1_555 M CA CA . C CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc11 B NE2 HIS 129 C HIS 134 1_555 L ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc12 B NE2 HIS 135 C HIS 140 1_555 L ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc13 B OD1 ASP 142 C ASP 147 1_555 L ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc14 B OD2 ASP 142 C ASP 147 1_555 L ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc15 B ND1 HIS 177 C HIS 182 1_555 L ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 312 n n C1 O1 NAG sing 313 n n C1 O5 NAG sing 314 n n C1 H1 NAG sing 315 n n C2 C3 NAG sing 316 n n C2 N2 NAG sing 317 n n C2 H2 NAG sing 318 n n C3 C4 NAG sing 319 n n C3 O3 NAG sing 320 n n C3 H3 NAG sing 321 n n C4 C5 NAG sing 322 n n C4 O4 NAG sing 323 n n C4 H4 NAG sing 324 n n C5 C6 NAG sing 325 n n C5 O5 NAG sing 326 n n C5 H5 NAG sing 327 n n C6 O6 NAG sing 328 n n C6 H61 NAG sing 329 n n C6 H62 NAG sing 330 n n C7 C8 NAG sing 331 n n C7 N2 NAG sing 332 n n C7 O7 NAG doub 333 n n C8 H81 NAG sing 334 n n C8 H82 NAG sing 335 n n C8 H83 NAG sing 336 n n N2 HN2 NAG sing 337 n n O1 HO1 NAG sing 338 n n O3 HO3 NAG sing 339 n n O4 HO4 NAG sing 340 n n O6 HO6 NAG sing 341 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7RHQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 CLR A 1 1501 1501 CLR CLR . H 6 Y01 A 1 1502 1502 Y01 Y01 . I 7 NAG A 1 1503 1505 NAG NAG . J 7 NAG A 1 1504 1506 NAG NAG . K 5 CLR C 1 201 198 CLR CLR . L 8 ZN C 1 202 200 ZN ZN . M 9 CA C 1 203 201 CA CA . N 9 CA C 1 204 202 CA CA . O 10 PLM C 1 205 23 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 7 131.763 109.051 182.671 1 138.97 ? C1 NAG 1504 A 1 HETATM 2 C C2 NAG . . . J 7 130.416 109.057 183.418 1 138.97 ? C2 NAG 1504 A 1 HETATM 3 C C3 NAG . . . J 7 130.357 107.906 184.421 1 138.97 ? C3 NAG 1504 A 1 HETATM 4 C C4 NAG . . . J 7 130.659 106.577 183.741 1 138.97 ? C4 NAG 1504 A 1 HETATM 5 C C5 NAG . . . J 7 132.007 106.648 183.029 1 138.97 ? C5 NAG 1504 A 1 HETATM 6 C C6 NAG . . . J 7 132.329 105.395 182.249 1 138.97 ? C6 NAG 1504 A 1 HETATM 7 C C7 NAG . . . J 7 129.26 111.221 183.756 1 138.97 ? C7 NAG 1504 A 1 HETATM 8 C C8 NAG . . . J 7 128.368 110.853 182.601 1 138.97 ? C8 NAG 1504 A 1 HETATM 9 N N2 NAG . . . J 7 130.205 110.33 184.091 1 138.97 ? N2 NAG 1504 A 1 HETATM 10 O O3 NAG . . . J 7 129.061 107.863 185.007 1 138.97 ? O3 NAG 1504 A 1 HETATM 11 O O4 NAG . . . J 7 130.696 105.536 184.709 1 138.97 ? O4 NAG 1504 A 1 HETATM 12 O O5 NAG . . . J 7 132 107.73 182.085 1 138.97 ? O5 NAG 1504 A 1 HETATM 13 O O6 NAG . . . J 7 131.887 104.231 182.932 1 138.97 ? O6 NAG 1504 A 1 HETATM 14 O O7 NAG . . . J 7 129.13 112.28 184.36 1 138.97 ? O7 NAG 1504 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 58 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 403 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #