data_7RI1
#
_model_server_result.job_id            '_ke40GsWrXeHU-t_I3_7Jg' 
_model_server_result.datetime_utc      '2024-11-28 04:15:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ri1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    7RI1 
#
_exptl.entry_id    7RI1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RI1 
_cell.length_a            119.09 
_cell.length_b            119.09 
_cell.length_c            110.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 35 A CYS 54 1_555 A SG CYS 55 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf2 A SG CYS 100 A CYS 119 1_555 A SG CYS 113 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf3 A SG CYS 126 A CYS 218 1_555 A SG CYS 155 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 A SG CYS 136 A CYS 228 1_555 A SG CYS 147 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf5 A SG CYS 204 A CYS 296 1_555 A SG CYS 223 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf6 A SG CYS 269 A CYS 378 1_555 A SG CYS 333 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf7 A SG CYS 276 A CYS 385 1_555 A SG CYS 306 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf8 B SG CYS 22 B CYS 22 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
covale ? covale1 A ND2 ASN 142 A ASN 234 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A ND2 ASN 149 A ASN 241 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 170 A ASN 262 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale4 A ND2 ASN 184 A ASN 276 1_555 F C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 A ND2 ASN 197 A ASN 289 1_555 G C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 A ND2 ASN 277 A ASN 386 1_555 H C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale7 A ND2 ASN 283 A ASN 392 1_555 I C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7RI1 
_atom_sites.fract_transf_matrix[1][1]    0.008397 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009048 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 501 734 NAG NAG . 
D 3 NAG A 1 502 741 NAG NAG . 
E 3 NAG A 1 503 762 NAG NAG . 
F 3 NAG A 1 504 776 NAG NAG . 
G 3 NAG A 1 505 789 NAG NAG . 
H 3 NAG A 1 506 886 NAG NAG . 
I 3 NAG A 1 507 892 NAG NAG . 
J 4 SO4 A 1 508 1 SO4 SO4 . 
K 4 SO4 A 1 509 2 SO4 SO4 . 
L 4 SO4 A 1 510 3 SO4 SO4 . 
M 4 SO4 A 1 511 5 SO4 SO4 . 
N 4 SO4 B 1 201 4 SO4 SO4 . 
O 5 HOH A 1 601 60 HOH HOH . 
O 5 HOH A 2 602 109 HOH HOH . 
O 5 HOH A 3 603 105 HOH HOH . 
O 5 HOH A 4 604 110 HOH HOH . 
O 5 HOH A 5 605 92 HOH HOH . 
O 5 HOH A 6 606 94 HOH HOH . 
O 5 HOH A 7 607 15 HOH HOH . 
O 5 HOH A 8 608 88 HOH HOH . 
O 5 HOH A 9 609 93 HOH HOH . 
O 5 HOH A 10 610 121 HOH HOH . 
O 5 HOH A 11 611 37 HOH HOH . 
O 5 HOH A 12 612 71 HOH HOH . 
O 5 HOH A 13 613 59 HOH HOH . 
O 5 HOH A 14 614 120 HOH HOH . 
O 5 HOH A 15 615 85 HOH HOH . 
O 5 HOH A 16 616 35 HOH HOH . 
O 5 HOH A 17 617 81 HOH HOH . 
O 5 HOH A 18 618 30 HOH HOH . 
O 5 HOH A 19 619 31 HOH HOH . 
O 5 HOH A 20 620 75 HOH HOH . 
O 5 HOH A 21 621 1 HOH HOH . 
O 5 HOH A 22 622 129 HOH HOH . 
O 5 HOH A 23 623 122 HOH HOH . 
O 5 HOH A 24 624 56 HOH HOH . 
O 5 HOH A 25 625 102 HOH HOH . 
O 5 HOH A 26 626 131 HOH HOH . 
O 5 HOH A 27 627 12 HOH HOH . 
O 5 HOH A 28 628 95 HOH HOH . 
O 5 HOH A 29 629 32 HOH HOH . 
O 5 HOH A 30 630 27 HOH HOH . 
O 5 HOH A 31 631 46 HOH HOH . 
O 5 HOH A 32 632 104 HOH HOH . 
O 5 HOH A 33 633 9 HOH HOH . 
O 5 HOH A 34 634 6 HOH HOH . 
O 5 HOH A 35 635 29 HOH HOH . 
O 5 HOH A 36 636 11 HOH HOH . 
O 5 HOH A 37 637 80 HOH HOH . 
O 5 HOH A 38 638 72 HOH HOH . 
O 5 HOH A 39 639 36 HOH HOH . 
O 5 HOH A 40 640 19 HOH HOH . 
O 5 HOH A 41 641 13 HOH HOH . 
O 5 HOH A 42 642 41 HOH HOH . 
O 5 HOH A 43 643 17 HOH HOH . 
O 5 HOH A 44 644 96 HOH HOH . 
O 5 HOH A 45 645 87 HOH HOH . 
O 5 HOH A 46 646 38 HOH HOH . 
O 5 HOH A 47 647 5 HOH HOH . 
O 5 HOH A 48 648 3 HOH HOH . 
O 5 HOH A 49 649 64 HOH HOH . 
O 5 HOH A 50 650 33 HOH HOH . 
O 5 HOH A 51 651 79 HOH HOH . 
O 5 HOH A 52 652 40 HOH HOH . 
O 5 HOH A 53 653 28 HOH HOH . 
O 5 HOH A 54 654 25 HOH HOH . 
O 5 HOH A 55 655 132 HOH HOH . 
O 5 HOH A 56 656 26 HOH HOH . 
O 5 HOH A 57 657 45 HOH HOH . 
O 5 HOH A 58 658 70 HOH HOH . 
O 5 HOH A 59 659 77 HOH HOH . 
O 5 HOH A 60 660 107 HOH HOH . 
O 5 HOH A 61 661 55 HOH HOH . 
O 5 HOH A 62 662 49 HOH HOH . 
O 5 HOH A 63 663 42 HOH HOH . 
O 5 HOH A 64 664 18 HOH HOH . 
O 5 HOH A 65 665 68 HOH HOH . 
O 5 HOH A 66 666 82 HOH HOH . 
O 5 HOH A 67 667 43 HOH HOH . 
O 5 HOH A 68 668 76 HOH HOH . 
O 5 HOH A 69 669 123 HOH HOH . 
O 5 HOH A 70 670 61 HOH HOH . 
O 5 HOH A 71 671 20 HOH HOH . 
O 5 HOH A 72 672 86 HOH HOH . 
O 5 HOH A 73 673 89 HOH HOH . 
O 5 HOH A 74 674 101 HOH HOH . 
O 5 HOH A 75 675 39 HOH HOH . 
O 5 HOH A 76 676 90 HOH HOH . 
O 5 HOH A 77 677 47 HOH HOH . 
O 5 HOH A 78 678 58 HOH HOH . 
O 5 HOH A 79 679 22 HOH HOH . 
O 5 HOH A 80 680 91 HOH HOH . 
O 5 HOH A 81 681 16 HOH HOH . 
O 5 HOH A 82 682 119 HOH HOH . 
O 5 HOH A 83 683 125 HOH HOH . 
O 5 HOH A 84 684 130 HOH HOH . 
O 5 HOH A 85 685 134 HOH HOH . 
O 5 HOH A 86 686 116 HOH HOH . 
O 5 HOH A 87 687 62 HOH HOH . 
O 5 HOH A 88 688 118 HOH HOH . 
O 5 HOH A 89 689 65 HOH HOH . 
O 5 HOH A 90 690 67 HOH HOH . 
O 5 HOH A 91 691 73 HOH HOH . 
O 5 HOH A 92 692 114 HOH HOH . 
O 5 HOH A 93 693 54 HOH HOH . 
O 5 HOH A 94 694 78 HOH HOH . 
P 5 HOH B 1 301 98 HOH HOH . 
P 5 HOH B 2 302 127 HOH HOH . 
P 5 HOH B 3 303 99 HOH HOH . 
P 5 HOH B 4 304 83 HOH HOH . 
P 5 HOH B 5 305 63 HOH HOH . 
P 5 HOH B 6 306 112 HOH HOH . 
P 5 HOH B 7 307 14 HOH HOH . 
P 5 HOH B 8 308 103 HOH HOH . 
P 5 HOH B 9 309 50 HOH HOH . 
P 5 HOH B 10 310 8 HOH HOH . 
P 5 HOH B 11 311 126 HOH HOH . 
P 5 HOH B 12 312 111 HOH HOH . 
P 5 HOH B 13 313 115 HOH HOH . 
P 5 HOH B 14 314 74 HOH HOH . 
P 5 HOH B 15 315 84 HOH HOH . 
P 5 HOH B 16 316 97 HOH HOH . 
P 5 HOH B 17 317 51 HOH HOH . 
P 5 HOH B 18 318 10 HOH HOH . 
P 5 HOH B 19 319 106 HOH HOH . 
P 5 HOH B 20 320 2 HOH HOH . 
P 5 HOH B 21 321 53 HOH HOH . 
P 5 HOH B 22 322 100 HOH HOH . 
P 5 HOH B 23 323 7 HOH HOH . 
P 5 HOH B 24 324 23 HOH HOH . 
P 5 HOH B 25 325 128 HOH HOH . 
P 5 HOH B 26 326 21 HOH HOH . 
P 5 HOH B 27 327 66 HOH HOH . 
P 5 HOH B 28 328 4 HOH HOH . 
P 5 HOH B 29 329 57 HOH HOH . 
P 5 HOH B 30 330 48 HOH HOH . 
P 5 HOH B 31 331 117 HOH HOH . 
P 5 HOH B 32 332 133 HOH HOH . 
P 5 HOH B 33 333 124 HOH HOH . 
P 5 HOH B 34 334 24 HOH HOH . 
P 5 HOH B 35 335 44 HOH HOH . 
P 5 HOH B 36 336 69 HOH HOH . 
P 5 HOH B 37 337 52 HOH HOH . 
P 5 HOH B 38 338 34 HOH HOH . 
P 5 HOH B 39 339 108 HOH HOH . 
P 5 HOH B 40 340 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 26.58 -49.155 18.994 1 42.32 ? C1 NAG 503 A 1 
HETATM 2 C C2 NAG . . . E 3 25.605 -50.212 18.477 1 45.14 ? C2 NAG 503 A 1 
HETATM 3 C C3 NAG . . . E 3 26.343 -51.521 18.182 1 46.11 ? C3 NAG 503 A 1 
HETATM 4 C C4 NAG . . . E 3 27.497 -51.263 17.22 1 43.14 ? C4 NAG 503 A 1 
HETATM 5 C C5 NAG . . . E 3 28.424 -50.219 17.818 1 46.41 ? C5 NAG 503 A 1 
HETATM 6 C C6 NAG . . . E 3 29.58 -49.865 16.91 1 46 ? C6 NAG 503 A 1 
HETATM 7 C C7 NAG . . . E 3 23.271 -50.057 19.188 1 43.07 ? C7 NAG 503 A 1 
HETATM 8 C C8 NAG . . . E 3 22.285 -50.338 20.282 1 38.33 ? C8 NAG 503 A 1 
HETATM 9 N N2 NAG . . . E 3 24.531 -50.429 19.429 1 42.76 ? N2 NAG 503 A 1 
HETATM 10 O O3 NAG . . . E 3 25.438 -52.47 17.626 1 47.23 ? O3 NAG 503 A 1 
HETATM 11 O O4 NAG . . . E 3 28.251 -52.445 16.993 1 45.7 ? O4 NAG 503 A 1 
HETATM 12 O O5 NAG . . . E 3 27.687 -49.009 18.058 1 45.93 ? O5 NAG 503 A 1 
HETATM 13 O O6 NAG . . . E 3 29.246 -48.79 16.041 1 52.17 ? O6 NAG 503 A 1 
HETATM 14 O O7 NAG . . . E 3 22.94 -49.519 18.129 1 39.24 ? O7 NAG 503 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#