data_7RIH # _model_server_result.job_id gJc-ZmSunuQTbzgZ4YAkCQ _model_server_result.datetime_utc '2025-03-06 08:37:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 7RIH # _exptl.entry_id 7RIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.47 _cell.angle_gamma 90 _cell.entry_id 7RIH _cell.length_a 26.038 _cell.length_b 24.731 _cell.length_c 34.729 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y+1/2,-z -1 0 0 0 1 0 0 0 -1 -26.038 12.3655 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG DCY 4 A DCY 4 1_555 A SG DCY 20 A DCY 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG DCY 8 A DCY 8 1_555 A SG DCY 22 A DCY 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG DCY 13 A DCY 13 1_555 A SG DCY 27 A DCY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 4 B CYS 4 1_555 B SG CYS 20 B CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 B SG CYS 8 B CYS 8 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 13 B CYS 13 1_555 B SG CYS 27 B CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A C GLY 1 A GLY 1 1_555 A N DPN 2 A DPN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A N GLY 1 A GLY 1 1_555 A C DSG 30 A DSG 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.285 ? covale ? covale3 A C DPN 2 A DPN 2 1_555 A N DPR 3 A DPR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 A C DPR 3 A DPR 3 1_555 A N DCY 4 A DCY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C DCY 4 A DCY 4 1_555 A N GLY 5 A GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C GLY 5 A GLY 5 1_555 A N DGL 6 A DGL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C DGL 6 A DGL 6 1_555 A N DSN 7 A DSN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C DSN 7 A DSN 7 1_555 A N DCY 8 A DCY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C DCY 8 A DCY 8 1_555 A N DVA 9 A DVA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale10 A C DVA 9 A DVA 9 1_555 A N DTY 10 A DTY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C DTY 10 A DTY 10 1_555 A N DLE 11 A DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C DLE 11 A DLE 11 1_555 A N DPR 12 A DPR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale13 A C DPR 12 A DPR 12 1_555 A N DCY 13 A DCY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale14 A C DCY 13 A DCY 13 1_555 A N DPN 14 A DPN 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 A C DPN 14 A DPN 14 1_555 A N DTH 15 A DTH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 A C DTH 15 A DTH 15 1_555 A N DAL 16 A DAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 A C DAL 16 A DAL 16 1_555 A N DAL 17 A DAL 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 A C DAL 17 A DAL 17 1_555 A N DIL 18 A DIL 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 A C DIL 18 A DIL 18 1_555 A N GLY 19 A GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 A C GLY 19 A GLY 19 1_555 A N DCY 20 A DCY 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale21 A C DCY 20 A DCY 20 1_555 A N DSN 21 A DSN 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale22 A C DSN 21 A DSN 21 1_555 A N DCY 22 A DCY 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale23 A C DCY 22 A DCY 22 1_555 A N DLY 23 A DLY 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 A C DLY 23 A DLY 23 1_555 A N DSN 24 A DSN 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 A C DSN 24 A DSN 24 1_555 A N DLY 25 A DLY 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale26 A C DLY 25 A DLY 25 1_555 A N DVA 26 A DVA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale27 A C DVA 26 A DVA 26 1_555 A N DCY 27 A DCY 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 A C DCY 27 A DCY 27 1_555 A N DTY 28 A DTY 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 A C DTY 28 A DTY 28 1_555 A N DLY 29 A DLY 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale30 A C DLY 29 A DLY 29 1_555 A N DSG 30 A DSG 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale31 B N GLY 1 B GLY 1 1_555 B C ASN 30 B ASN 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 277 n n CAC OA1 FLC doub 278 n n CAC OA2 FLC sing 279 n n CA CB FLC sing 280 n n CA HA1 FLC sing 281 n n CA HA2 FLC sing 282 n n CB CBC FLC sing 283 n n CB CG FLC sing 284 n n CB OHB FLC sing 285 n n CBC OB1 FLC doub 286 n n CBC OB2 FLC sing 287 n n CG CGC FLC sing 288 n n CG HG1 FLC sing 289 n n CG HG2 FLC sing 290 n n CGC OG1 FLC doub 291 n n CGC OG2 FLC sing 292 n n OHB HOB FLC sing 293 n n # _atom_sites.entry_id 7RIH _atom_sites.fract_transf_matrix[1][1] 0.038405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008491 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.040435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FLC A 1 101 101 FLC FLC . D 3 FLC B 1 101 101 FLC FLC . E 4 HOH A 1 201 4 HOH HOH . E 4 HOH A 2 202 62 HOH HOH . E 4 HOH A 3 203 17 HOH HOH . E 4 HOH A 4 204 13 HOH HOH . E 4 HOH A 5 205 26 HOH HOH . E 4 HOH A 6 206 35 HOH HOH . E 4 HOH A 7 207 41 HOH HOH . E 4 HOH A 8 208 19 HOH HOH . E 4 HOH A 9 209 12 HOH HOH . E 4 HOH A 10 210 3 HOH HOH . E 4 HOH A 11 211 5 HOH HOH . E 4 HOH A 12 212 28 HOH HOH . E 4 HOH A 13 213 32 HOH HOH . E 4 HOH A 14 214 25 HOH HOH . E 4 HOH A 15 215 23 HOH HOH . E 4 HOH A 16 216 11 HOH HOH . E 4 HOH A 17 217 43 HOH HOH . E 4 HOH A 18 218 38 HOH HOH . E 4 HOH A 19 219 20 HOH HOH . E 4 HOH A 20 220 67 HOH HOH . E 4 HOH A 21 221 30 HOH HOH . E 4 HOH A 22 222 77 HOH HOH . E 4 HOH A 23 223 15 HOH HOH . E 4 HOH A 24 224 78 HOH HOH . E 4 HOH A 25 225 37 HOH HOH . E 4 HOH A 26 226 71 HOH HOH . E 4 HOH A 27 227 50 HOH HOH . E 4 HOH A 28 228 75 HOH HOH . E 4 HOH A 29 229 56 HOH HOH . E 4 HOH A 30 230 61 HOH HOH . E 4 HOH A 31 231 53 HOH HOH . E 4 HOH A 32 232 44 HOH HOH . E 4 HOH A 33 233 49 HOH HOH . E 4 HOH A 34 234 74 HOH HOH . E 4 HOH A 35 235 57 HOH HOH . E 4 HOH A 36 236 80 HOH HOH . E 4 HOH A 37 237 79 HOH HOH . E 4 HOH A 38 238 52 HOH HOH . E 4 HOH A 39 239 60 HOH HOH . E 4 HOH A 40 240 51 HOH HOH . E 4 HOH A 41 241 46 HOH HOH . E 4 HOH A 42 242 55 HOH HOH . E 4 HOH A 43 243 47 HOH HOH . E 4 HOH A 44 244 72 HOH HOH . F 4 HOH B 1 201 36 HOH HOH . F 4 HOH B 2 202 34 HOH HOH . F 4 HOH B 3 203 16 HOH HOH . F 4 HOH B 4 204 8 HOH HOH . F 4 HOH B 5 205 69 HOH HOH . F 4 HOH B 6 206 73 HOH HOH . F 4 HOH B 7 207 9 HOH HOH . F 4 HOH B 8 208 68 HOH HOH . F 4 HOH B 9 209 40 HOH HOH . F 4 HOH B 10 210 42 HOH HOH . F 4 HOH B 11 211 31 HOH HOH . F 4 HOH B 12 212 33 HOH HOH . F 4 HOH B 13 213 14 HOH HOH . F 4 HOH B 14 214 54 HOH HOH . F 4 HOH B 15 215 18 HOH HOH . F 4 HOH B 16 216 10 HOH HOH . F 4 HOH B 17 217 63 HOH HOH . F 4 HOH B 18 218 1 HOH HOH . F 4 HOH B 19 219 48 HOH HOH . F 4 HOH B 20 220 24 HOH HOH . F 4 HOH B 21 221 2 HOH HOH . F 4 HOH B 22 222 21 HOH HOH . F 4 HOH B 23 223 6 HOH HOH . F 4 HOH B 24 224 7 HOH HOH . F 4 HOH B 25 225 27 HOH HOH . F 4 HOH B 26 226 65 HOH HOH . F 4 HOH B 27 227 29 HOH HOH . F 4 HOH B 28 228 22 HOH HOH . F 4 HOH B 29 229 39 HOH HOH . F 4 HOH B 30 230 64 HOH HOH . F 4 HOH B 31 231 45 HOH HOH . F 4 HOH B 32 232 76 HOH HOH . F 4 HOH B 33 233 70 HOH HOH . F 4 HOH B 34 234 66 HOH HOH . F 4 HOH B 35 235 58 HOH HOH . F 4 HOH B 36 236 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . C 3 2.579 -5.269 1.073 1 10.95 ? CAC FLC 101 A 1 HETATM 2 C CA FLC . . . C 3 2.175 -4.464 2.299 1 13.76 ? CA FLC 101 A 1 HETATM 3 C CB FLC . . . C 3 0.722 -4.709 2.711 1 12.95 ? CB FLC 101 A 1 HETATM 4 C CBC FLC . . . C 3 0.43 -3.791 3.893 1 22.72 ? CBC FLC 101 A 1 HETATM 5 C CG FLC . . . C 3 0.612 -6.18 3.143 1 15.68 ? CG FLC 101 A 1 HETATM 6 C CGC FLC . . . C 3 -0.762 -6.551 3.695 1 19.66 ? CGC FLC 101 A 1 HETATM 7 O OA1 FLC . . . C 3 1.725 -5.427 0.162 1 14.25 ? OA1 FLC 101 A 1 HETATM 8 O OA2 FLC . . . C 3 3.73 -5.763 0.996 1 15.36 ? OA2 FLC 101 A 1 HETATM 9 O OB1 FLC . . . C 3 -0.446 -2.887 3.789 1 26.18 ? OB1 FLC 101 A 1 HETATM 10 O OB2 FLC . . . C 3 1.07 -3.938 4.963 1 20.65 ? OB2 FLC 101 A 1 HETATM 11 O OG1 FLC . . . C 3 -1.107 -7.767 3.704 1 19.39 ? OG1 FLC 101 A 1 HETATM 12 O OG2 FLC . . . C 3 -1.553 -5.677 4.143 1 23.9 ? OG2 FLC 101 A 1 HETATM 13 O OHB FLC . . . C 3 -0.173 -4.4 1.67 1 13.95 ? OHB FLC 101 A 1 HETATM 14 H HA1 FLC . . . C 3 2.3 -3.411 2.08 1 16.56 ? HA1 FLC 101 A 1 HETATM 15 H HA2 FLC . . . C 3 2.82 -4.74 3.124 1 16.56 ? HA2 FLC 101 A 1 HETATM 16 H HG1 FLC . . . C 3 1.352 -6.368 3.91 1 18.86 ? HG1 FLC 101 A 1 HETATM 17 H HG2 FLC . . . C 3 0.815 -6.806 2.283 1 18.86 ? HG2 FLC 101 A 1 HETATM 18 H HOB FLC . . . C 3 -0.111 -5.054 0.994 1 16.78 ? HOB FLC 101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #