data_7RJA # _model_server_result.job_id fsyJOxqipLz3abs4vporTA _model_server_result.datetime_utc '2024-11-21 14:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":301}' # _entry.id 7RJA # _exptl.entry_id 7RJA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RJA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 W N N ? 12 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 O SG CYS 89 R CYS 89 1_555 O SG CYS 111 R CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B NE2 GLN 22 K GLN 22 1_555 V C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B OE1 GLN 43 K GLN 43 1_555 S C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 C SG CYS 82 D CYS 82 1_555 W CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale4 C SG CYS 85 D CYS 85 1_555 W CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale5 K OE1 GLN 43 T GLN 43 1_555 Y C1B HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale6 L SG CYS 82 N CYS 82 1_555 CA CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale7 L SG CYS 85 N CYS 85 1_555 CA CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 W FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc6 H O HIS 158 C HIS 158 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 K NE2 HIS 82 T HIS 82 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc8 K NE2 HIS 96 T HIS 96 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc9 K NE2 HIS 183 T HIS 183 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 K NE2 HIS 197 T HIS 197 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 Q O HIS 158 M HIS 158 1_555 DA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc12 Q O HIS 158 M HIS 158 1_555 DA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7RJA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM K 1 401 401 HEM HEM . T 10 HEM K 1 402 402 HEM HEM . U 11 U10 K 1 403 408 U10 U10 . V 11 U10 K 1 404 409 U10 U10 . W 12 HEC D 1 301 3 HEC HEC . X 13 FES C 1 301 4 FES FES . Y 10 HEM T 1 401 401 HEM HEM . Z 10 HEM T 1 402 402 HEM HEM . AA 11 U10 T 1 403 406 U10 U10 . BA 11 U10 T 1 404 407 U10 U10 . CA 12 HEC N 1 301 3 HEC HEC . DA 13 FES M 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . W 12 138.409 125.901 85.752 1 110.17 ? FE HEC 301 D 1 HETATM 2 C CHA HEC . . . W 12 135.755 127.039 87.556 1 110.17 ? CHA HEC 301 D 1 HETATM 3 C CHB HEC . . . W 12 139.572 124.235 88.504 1 110.17 ? CHB HEC 301 D 1 HETATM 4 C CHC HEC . . . W 12 140.932 124.521 83.868 1 110.17 ? CHC HEC 301 D 1 HETATM 5 C CHD HEC . . . W 12 137.455 127.825 83.097 1 110.17 ? CHD HEC 301 D 1 HETATM 6 N NA HEC . . . W 12 137.721 125.591 87.642 1 110.17 ? NA HEC 301 D 1 HETATM 7 C C1A HEC . . . W 12 136.719 126.333 88.23 1 110.17 ? C1A HEC 301 D 1 HETATM 8 C C2A HEC . . . W 12 136.862 126.235 89.665 1 110.17 ? C2A HEC 301 D 1 HETATM 9 C C3A HEC . . . W 12 137.915 125.46 89.918 1 110.17 ? C3A HEC 301 D 1 HETATM 10 C C4A HEC . . . W 12 138.475 125.042 88.656 1 110.17 ? C4A HEC 301 D 1 HETATM 11 C CMA HEC . . . W 12 138.467 125.062 91.298 1 110.17 ? CMA HEC 301 D 1 HETATM 12 C CAA HEC . . . W 12 135.953 126.915 90.71 1 110.17 ? CAA HEC 301 D 1 HETATM 13 C CBA HEC . . . W 12 134.942 125.909 91.242 1 110.17 ? CBA HEC 301 D 1 HETATM 14 C CGA HEC . . . W 12 134.151 126.558 92.343 1 110.17 ? CGA HEC 301 D 1 HETATM 15 O O1A HEC . . . W 12 133.233 125.897 92.891 1 110.17 ? O1A HEC 301 D 1 HETATM 16 O O2A HEC . . . W 12 134.439 127.735 92.675 1 110.17 ? O2A HEC 301 D 1 HETATM 17 N NB HEC . . . W 12 139.99 124.643 86.117 1 110.17 ? NB HEC 301 D 1 HETATM 18 C C1B HEC . . . W 12 140.237 124.018 87.323 1 110.17 ? C1B HEC 301 D 1 HETATM 19 C C2B HEC . . . W 12 141.317 123.083 87.137 1 110.17 ? C2B HEC 301 D 1 HETATM 20 C C3B HEC . . . W 12 141.708 123.142 85.865 1 110.17 ? C3B HEC 301 D 1 HETATM 21 C C4B HEC . . . W 12 140.876 124.13 85.189 1 110.17 ? C4B HEC 301 D 1 HETATM 22 C CMB HEC . . . W 12 141.906 122.182 88.242 1 110.17 ? CMB HEC 301 D 1 HETATM 23 C CAB HEC . . . W 12 142.853 122.28 85.289 1 110.17 ? CAB HEC 301 D 1 HETATM 24 C CBB HEC . . . W 12 143.188 122.329 83.999 1 110.17 ? CBB HEC 301 D 1 HETATM 25 N NC HEC . . . W 12 139.135 126.211 83.858 1 110.17 ? NC HEC 301 D 1 HETATM 26 C C1C HEC . . . W 12 140.046 125.375 83.244 1 110.17 ? C1C HEC 301 D 1 HETATM 27 C C2C HEC . . . W 12 139.919 125.555 81.815 1 110.17 ? C2C HEC 301 D 1 HETATM 28 C C3C HEC . . . W 12 138.963 126.456 81.58 1 110.17 ? C3C HEC 301 D 1 HETATM 29 C C4C HEC . . . W 12 138.447 126.892 82.869 1 110.17 ? C4C HEC 301 D 1 HETATM 30 C CMC HEC . . . W 12 140.753 124.807 80.753 1 110.17 ? CMC HEC 301 D 1 HETATM 31 C CAC HEC . . . W 12 138.525 126.926 80.172 1 110.17 ? CAC HEC 301 D 1 HETATM 32 C CBC HEC . . . W 12 137.435 127.677 79.986 1 110.17 ? CBC HEC 301 D 1 HETATM 33 N ND HEC . . . W 12 136.838 127.138 85.366 1 110.17 ? ND HEC 301 D 1 HETATM 34 C C1D HEC . . . W 12 136.727 127.953 84.259 1 110.17 ? C1D HEC 301 D 1 HETATM 35 C C2D HEC . . . W 12 135.717 128.953 84.542 1 110.17 ? C2D HEC 301 D 1 HETATM 36 C C3D HEC . . . W 12 135.246 128.733 85.771 1 110.17 ? C3D HEC 301 D 1 HETATM 37 C C4D HEC . . . W 12 135.942 127.59 86.312 1 110.17 ? C4D HEC 301 D 1 HETATM 38 C CMD HEC . . . W 12 135.263 130.076 83.587 1 110.17 ? CMD HEC 301 D 1 HETATM 39 C CAD HEC . . . W 12 134.16 129.549 86.503 1 110.17 ? CAD HEC 301 D 1 HETATM 40 C CBD HEC . . . W 12 132.938 128.669 86.749 1 110.17 ? CBD HEC 301 D 1 HETATM 41 C CGD HEC . . . W 12 131.942 129.412 87.597 1 110.17 ? CGD HEC 301 D 1 HETATM 42 O O1D HEC . . . W 12 132.301 130.482 88.15 1 110.17 ? O1D HEC 301 D 1 HETATM 43 O O2D HEC . . . W 12 130.79 128.927 87.724 1 110.17 ? O2D HEC 301 D 1 HETATM 44 H HHA HEC . . . W 12 134.829 126.869 87.825 1 110.17 ? HHA HEC 301 D 1 HETATM 45 H HHB HEC . . . W 12 139.807 123.655 89.258 1 110.17 ? HHB HEC 301 D 1 HETATM 46 H HHC HEC . . . W 12 141.802 124.424 83.429 1 110.17 ? HHC HEC 301 D 1 HETATM 47 H HHD HEC . . . W 12 137.394 128.565 82.459 1 110.17 ? HHD HEC 301 D 1 HETATM 48 H HMA1 HEC . . . W 12 138.554 124.087 91.346 1 110.17 ? HMA1 HEC 301 D 1 HETATM 49 H HMA2 HEC . . . W 12 137.856 125.372 91.998 1 110.17 ? HMA2 HEC 301 D 1 HETATM 50 H HMA3 HEC . . . W 12 139.347 125.474 91.419 1 110.17 ? HMA3 HEC 301 D 1 HETATM 51 H HAA1 HEC . . . W 12 135.483 127.656 90.295 1 110.17 ? HAA1 HEC 301 D 1 HETATM 52 H HAA2 HEC . . . W 12 136.497 127.246 91.441 1 110.17 ? HAA2 HEC 301 D 1 HETATM 53 H HBA1 HEC . . . W 12 135.407 125.132 91.589 1 110.17 ? HBA1 HEC 301 D 1 HETATM 54 H HBA2 HEC . . . W 12 134.344 125.64 90.527 1 110.17 ? HBA2 HEC 301 D 1 HETATM 55 H HMB1 HEC . . . W 12 142.401 121.449 87.844 1 110.17 ? HMB1 HEC 301 D 1 HETATM 56 H HMB2 HEC . . . W 12 141.185 121.829 88.784 1 110.17 ? HMB2 HEC 301 D 1 HETATM 57 H HMB3 HEC . . . W 12 142.496 122.708 88.804 1 110.17 ? HMB3 HEC 301 D 1 HETATM 58 H HAB HEC . . . W 12 143.391 121.758 85.886 1 110.17 ? HAB HEC 301 D 1 HETATM 59 H HBB1 HEC . . . W 12 144.124 122.315 83.758 1 110.17 ? HBB1 HEC 301 D 1 HETATM 60 H HBB2 HEC . . . W 12 142.525 122.546 83.329 1 110.17 ? HBB2 HEC 301 D 1 HETATM 61 H HMC1 HEC . . . W 12 140.401 124.985 79.867 1 110.17 ? HMC1 HEC 301 D 1 HETATM 62 H HMC2 HEC . . . W 12 140.714 123.854 80.928 1 110.17 ? HMC2 HEC 301 D 1 HETATM 63 H HMC3 HEC . . . W 12 141.675 125.104 80.801 1 110.17 ? HMC3 HEC 301 D 1 HETATM 64 H HAC HEC . . . W 12 138.977 126.577 79.401 1 110.17 ? HAC HEC 301 D 1 HETATM 65 H HBC1 HEC . . . W 12 137.321 128.159 79.152 1 110.17 ? HBC1 HEC 301 D 1 HETATM 66 H HBC2 HEC . . . W 12 136.72 127.676 80.638 1 110.17 ? HBC2 HEC 301 D 1 HETATM 67 H HMD1 HEC . . . W 12 134.299 130.221 83.691 1 110.17 ? HMD1 HEC 301 D 1 HETATM 68 H HMD2 HEC . . . W 12 135.456 129.818 82.662 1 110.17 ? HMD2 HEC 301 D 1 HETATM 69 H HMD3 HEC . . . W 12 135.742 130.903 83.801 1 110.17 ? HMD3 HEC 301 D 1 HETATM 70 H HAD1 HEC . . . W 12 133.905 130.313 85.963 1 110.17 ? HAD1 HEC 301 D 1 HETATM 71 H HAD2 HEC . . . W 12 134.511 129.858 87.352 1 110.17 ? HAD2 HEC 301 D 1 HETATM 72 H HBD1 HEC . . . W 12 133.202 127.858 87.205 1 110.17 ? HBD1 HEC 301 D 1 HETATM 73 H HBD2 HEC . . . W 12 132.528 128.442 85.902 1 110.17 ? HBD2 HEC 301 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 73 #