data_7RJA
#
_model_server_result.job_id            kdu232xyKHNeigrRZ-xR6Q 
_model_server_result.datetime_utc      '2024-11-21 14:35:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":401}' 
#
_entry.id    7RJA 
#
_exptl.entry_id    7RJA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RJA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 S N N 
? 10 T N N 
? 10 Y N N 
? 10 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 O SG CYS 89 R CYS 89 1_555 O SG CYS 111 R CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B NE2 GLN 22 K GLN 22 1_555 V C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 B OE1 GLN 43 K GLN 43 1_555 S C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale3 C SG CYS 82 D CYS 82 1_555 W CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale4 C SG CYS 85 D CYS 85 1_555 W CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
covale ? covale5 K OE1 GLN 43 T GLN 43 1_555 Y C1B HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale6 L SG CYS 82 N CYS 82 1_555 CA CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
covale ? covale7 L SG CYS 85 N CYS 85 1_555 CA CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 W FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc6 H O HIS 158 C HIS 158 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc7 K NE2 HIS 82 T HIS 82 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc8 K NE2 HIS 96 T HIS 96 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc9 K NE2 HIS 183 T HIS 183 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc10 K NE2 HIS 197 T HIS 197 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc11 Q O HIS 158 M HIS 158 1_555 DA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc12 Q O HIS 158 M HIS 158 1_555 DA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
_atom_sites.entry_id                     7RJA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 10 HEM K 1 401 401 HEM HEM . 
T 10 HEM K 1 402 402 HEM HEM . 
U 11 U10 K 1 403 408 U10 U10 . 
V 11 U10 K 1 404 409 U10 U10 . 
W 12 HEC D 1 301 3 HEC HEC . 
X 13 FES C 1 301 4 FES FES . 
Y 10 HEM T 1 401 401 HEM HEM . 
Z 10 HEM T 1 402 402 HEM HEM . 
AA 11 U10 T 1 403 406 U10 U10 . 
BA 11 U10 T 1 404 407 U10 U10 . 
CA 12 HEC N 1 301 3 HEC HEC . 
DA 13 FES M 1 301 4 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . S 10 143.445 139.588 113.201 1 74.17 ? CHA HEM 401 K 1 
HETATM 2 C CHB HEM . . . S 10 141.876 138.195 117.574 1 74.17 ? CHB HEM 401 K 1 
HETATM 3 C CHC HEM . . . S 10 144.861 141.387 119.627 1 74.17 ? CHC HEM 401 K 1 
HETATM 4 C CHD HEM . . . S 10 146.89 142.195 115.311 1 74.17 ? CHD HEM 401 K 1 
HETATM 5 C C1A HEM . . . S 10 142.779 138.926 114.201 1 74.17 ? C1A HEM 401 K 1 
HETATM 6 C C2A HEM . . . S 10 141.82 137.867 114.013 1 74.17 ? C2A HEM 401 K 1 
HETATM 7 C C3A HEM . . . S 10 141.385 137.483 115.207 1 74.17 ? C3A HEM 401 K 1 
HETATM 8 C C4A HEM . . . S 10 142.05 138.286 116.21 1 74.17 ? C4A HEM 401 K 1 
HETATM 9 C CMA HEM . . . S 10 140.352 136.368 115.462 1 74.17 ? CMA HEM 401 K 1 
HETATM 10 C CAA HEM . . . S 10 141.382 137.267 112.665 1 74.17 ? CAA HEM 401 K 1 
HETATM 11 C CBA HEM . . . S 10 142.617 136.897 111.853 1 74.17 ? CBA HEM 401 K 1 
HETATM 12 C CGA HEM . . . S 10 142.26 135.906 110.782 1 74.17 ? CGA HEM 401 K 1 
HETATM 13 O O1A HEM . . . S 10 141.118 135.382 110.791 1 74.17 ? O1A HEM 401 K 1 
HETATM 14 O O2A HEM . . . S 10 143.127 135.641 109.914 1 74.17 ? O2A HEM 401 K 1 
HETATM 15 C C1B HEM . . . S 10 142.507 138.972 118.518 1 74.17 ? C1B HEM 401 K 1 
HETATM 16 C C2B HEM . . . S 10 142.181 139.044 119.922 1 74.17 ? C2B HEM 401 K 1 
HETATM 17 C C3B HEM . . . S 10 143.001 139.935 120.489 1 74.17 ? C3B HEM 401 K 1 
HETATM 18 C C4B HEM . . . S 10 143.871 140.451 119.456 1 74.17 ? C4B HEM 401 K 1 
HETATM 19 C CMB HEM . . . S 10 141.068 138.212 120.593 1 74.17 ? CMB HEM 401 K 1 
HETATM 20 C CAB HEM . . . S 10 143.083 140.359 121.97 1 74.17 ? CAB HEM 401 K 1 
HETATM 21 C CBB HEM . . . S 10 142.503 139.644 122.938 1 74.17 ? CBB HEM 401 K 1 
HETATM 22 C C1C HEM . . . S 10 145.697 141.854 118.642 1 74.17 ? C1C HEM 401 K 1 
HETATM 23 C C2C HEM . . . S 10 146.829 142.731 118.831 1 74.17 ? C2C HEM 401 K 1 
HETATM 24 C C3C HEM . . . S 10 147.38 142.954 117.65 1 74.17 ? C3C HEM 401 K 1 
HETATM 25 C C4C HEM . . . S 10 146.629 142.225 116.656 1 74.17 ? C4C HEM 401 K 1 
HETATM 26 C CMC HEM . . . S 10 147.325 143.325 120.161 1 74.17 ? CMC HEM 401 K 1 
HETATM 27 C CAC HEM . . . S 10 148.616 143.833 117.416 1 74.17 ? CAC HEM 401 K 1 
HETATM 28 C CBC HEM . . . S 10 149.098 143.98 116.184 1 74.17 ? CBC HEM 401 K 1 
HETATM 29 C C1D HEM . . . S 10 146.106 141.597 114.372 1 74.17 ? C1D HEM 401 K 1 
HETATM 30 C C2D HEM . . . S 10 146.308 141.705 112.95 1 74.17 ? C2D HEM 401 K 1 
HETATM 31 C C3D HEM . . . S 10 145.368 140.986 112.354 1 74.17 ? C3D HEM 401 K 1 
HETATM 32 C C4D HEM . . . S 10 144.531 140.404 113.385 1 74.17 ? C4D HEM 401 K 1 
HETATM 33 C CMD HEM . . . S 10 147.434 142.511 112.276 1 74.17 ? CMD HEM 401 K 1 
HETATM 34 C CAD HEM . . . S 10 145.206 140.818 110.834 1 74.17 ? CAD HEM 401 K 1 
HETATM 35 C CBD HEM . . . S 10 145.065 139.334 110.528 1 74.17 ? CBD HEM 401 K 1 
HETATM 36 C CGD HEM . . . S 10 145.983 138.926 109.414 1 74.17 ? CGD HEM 401 K 1 
HETATM 37 O O1D HEM . . . S 10 146.107 137.7 109.19 1 74.17 ? O1D HEM 401 K 1 
HETATM 38 O O2D HEM . . . S 10 146.591 139.802 108.753 1 74.17 ? O2D HEM 401 K 1 
HETATM 39 N NA HEM . . . S 10 142.895 139.16 115.556 1 74.17 ? NA HEM 401 K 1 
HETATM 40 N NB HEM . . . S 10 143.533 139.852 118.265 1 74.17 ? NB HEM 401 K 1 
HETATM 41 N NC HEM . . . S 10 145.605 141.562 117.297 1 74.17 ? NC HEM 401 K 1 
HETATM 42 N ND HEM . . . S 10 145.016 140.794 114.613 1 74.17 ? ND HEM 401 K 1 
HETATM 43 FE FE HEM . . . S 10 144.361 140.211 116.461 1 74.17 ? FE HEM 401 K 1 
HETATM 44 H HHB HEM . . . S 10 141.163 137.602 117.892 1 74.17 ? HHB HEM 401 K 1 
HETATM 45 H HHC HEM . . . S 10 145.012 141.719 120.536 1 74.17 ? HHC HEM 401 K 1 
HETATM 46 H HHD HEM . . . S 10 147.834 142.264 115.063 1 74.17 ? HHD HEM 401 K 1 
HETATM 47 H HMA HEM . . . S 10 139.593 136.486 114.854 1 74.17 ? HMA HEM 401 K 1 
HETATM 48 H HMAA HEM . . . S 10 140.035 136.42 116.387 1 74.17 ? HMAA HEM 401 K 1 
HETATM 49 H HMAB HEM . . . S 10 140.764 135.494 115.3 1 74.17 ? HMAB HEM 401 K 1 
HETATM 50 H HAA HEM . . . S 10 140.874 137.926 112.178 1 74.17 ? HAA HEM 401 K 1 
HETATM 51 H HAAA HEM . . . S 10 140.837 136.481 112.82 1 74.17 ? HAAA HEM 401 K 1 
HETATM 52 H HBA HEM . . . S 10 143.287 136.513 112.439 1 74.17 ? HBA HEM 401 K 1 
HETATM 53 H HBAA HEM . . . S 10 142.974 137.693 111.433 1 74.17 ? HBAA HEM 401 K 1 
HETATM 54 H HMB HEM . . . S 10 140.398 137.982 119.931 1 74.17 ? HMB HEM 401 K 1 
HETATM 55 H HMBA HEM . . . S 10 140.65 138.728 121.3 1 74.17 ? HMBA HEM 401 K 1 
HETATM 56 H HMBB HEM . . . S 10 141.448 137.398 120.96 1 74.17 ? HMBB HEM 401 K 1 
HETATM 57 H HAB HEM . . . S 10 143.553 141.164 122.201 1 74.17 ? HAB HEM 401 K 1 
HETATM 58 H HBB HEM . . . S 10 142.309 140.057 123.792 1 74.17 ? HBB HEM 401 K 1 
HETATM 59 H HBBA HEM . . . S 10 142.337 138.698 122.814 1 74.17 ? HBBA HEM 401 K 1 
HETATM 60 H HMC HEM . . . S 10 148.295 143.301 120.185 1 74.17 ? HMC HEM 401 K 1 
HETATM 61 H HMCA HEM . . . S 10 146.97 142.804 120.897 1 74.17 ? HMCA HEM 401 K 1 
HETATM 62 H HMCB HEM . . . S 10 147.022 144.243 120.24 1 74.17 ? HMCB HEM 401 K 1 
HETATM 63 H HAC HEM . . . S 10 149.108 144.177 118.165 1 74.17 ? HAC HEM 401 K 1 
HETATM 64 H HBC HEM . . . S 10 150.052 143.93 116.027 1 74.17 ? HBC HEM 401 K 1 
HETATM 65 H HBCA HEM . . . S 10 148.502 144.193 115.45 1 74.17 ? HBCA HEM 401 K 1 
HETATM 66 H HMD HEM . . . S 10 147.479 143.402 112.682 1 74.17 ? HMD HEM 401 K 1 
HETATM 67 H HMDA HEM . . . S 10 147.259 142.603 111.317 1 74.17 ? HMDA HEM 401 K 1 
HETATM 68 H HMDB HEM . . . S 10 148.289 142.053 112.412 1 74.17 ? HMDB HEM 401 K 1 
HETATM 69 H HAD HEM . . . S 10 145.98 141.184 110.384 1 74.17 ? HAD HEM 401 K 1 
HETATM 70 H HADA HEM . . . S 10 144.41 141.286 110.54 1 74.17 ? HADA HEM 401 K 1 
HETATM 71 H HBD HEM . . . S 10 144.15 139.152 110.265 1 74.17 ? HBD HEM 401 K 1 
HETATM 72 H HBDA HEM . . . S 10 145.281 138.817 111.318 1 74.17 ? HBDA HEM 401 K 1 
HETATM 73 H HHA HEM . . . S 10 142.997 139.639 112.331 1 74.17 ? HHA HEM 401 K 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           73 
#