data_7RJA # _model_server_result.job_id m-s1yO9d8dRNENbfzquwqA _model_server_result.datetime_utc '2024-11-21 14:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":401}' # _entry.id 7RJA # _exptl.entry_id 7RJA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RJA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 Y N N ? 10 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 O SG CYS 89 R CYS 89 1_555 O SG CYS 111 R CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B NE2 GLN 22 K GLN 22 1_555 V C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B OE1 GLN 43 K GLN 43 1_555 S C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 C SG CYS 82 D CYS 82 1_555 W CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale4 C SG CYS 85 D CYS 85 1_555 W CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale5 K OE1 GLN 43 T GLN 43 1_555 Y C1B HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale6 L SG CYS 82 N CYS 82 1_555 CA CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale7 L SG CYS 85 N CYS 85 1_555 CA CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 W FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc6 H O HIS 158 C HIS 158 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 K NE2 HIS 82 T HIS 82 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc8 K NE2 HIS 96 T HIS 96 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc9 K NE2 HIS 183 T HIS 183 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 K NE2 HIS 197 T HIS 197 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 Q O HIS 158 M HIS 158 1_555 DA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc12 Q O HIS 158 M HIS 158 1_555 DA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 7RJA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM K 1 401 401 HEM HEM . T 10 HEM K 1 402 402 HEM HEM . U 11 U10 K 1 403 408 U10 U10 . V 11 U10 K 1 404 409 U10 U10 . W 12 HEC D 1 301 3 HEC HEC . X 13 FES C 1 301 4 FES FES . Y 10 HEM T 1 401 401 HEM HEM . Z 10 HEM T 1 402 402 HEM HEM . AA 11 U10 T 1 403 406 U10 U10 . BA 11 U10 T 1 404 407 U10 U10 . CA 12 HEC N 1 301 3 HEC HEC . DA 13 FES M 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . Y 10 154.871 159.704 114 1 76.18 ? CHA HEM 401 T 1 HETATM 2 C CHB HEM . . . Y 10 156.27 160.74 118.518 1 76.18 ? CHB HEM 401 T 1 HETATM 3 C CHC HEM . . . Y 10 153.153 157.451 120.195 1 76.18 ? CHC HEM 401 T 1 HETATM 4 C CHD HEM . . . Y 10 151.283 157.032 115.758 1 76.18 ? CHD HEM 401 T 1 HETATM 5 C C1A HEM . . . Y 10 155.506 160.281 115.069 1 76.18 ? C1A HEM 401 T 1 HETATM 6 C C2A HEM . . . Y 10 156.487 161.334 114.997 1 76.18 ? C2A HEM 401 T 1 HETATM 7 C C3A HEM . . . Y 10 156.875 161.623 116.234 1 76.18 ? C3A HEM 401 T 1 HETATM 8 C C4A HEM . . . Y 10 156.157 160.756 117.145 1 76.18 ? C4A HEM 401 T 1 HETATM 9 C CMA HEM . . . Y 10 157.914 162.699 116.606 1 76.18 ? CMA HEM 401 T 1 HETATM 10 C CAA HEM . . . Y 10 156.983 162.022 113.712 1 76.18 ? CAA HEM 401 T 1 HETATM 11 C CBA HEM . . . Y 10 155.771 162.555 112.955 1 76.18 ? CBA HEM 401 T 1 HETATM 12 C CGA HEM . . . Y 10 156.152 163.712 112.07 1 76.18 ? CGA HEM 401 T 1 HETATM 13 O O1A HEM . . . Y 10 157.236 164.312 112.273 1 76.18 ? O1A HEM 401 T 1 HETATM 14 O O2A HEM . . . Y 10 155.358 164.044 111.156 1 76.18 ? O2A HEM 401 T 1 HETATM 15 C C1B HEM . . . Y 10 155.577 159.913 119.371 1 76.18 ? C1B HEM 401 T 1 HETATM 16 C C2B HEM . . . Y 10 155.817 159.757 120.786 1 76.18 ? C2B HEM 401 T 1 HETATM 17 C C3B HEM . . . Y 10 154.96 158.838 121.246 1 76.18 ? C3B HEM 401 T 1 HETATM 18 C C4B HEM . . . Y 10 154.154 158.39 120.135 1 76.18 ? C4B HEM 401 T 1 HETATM 19 C CMB HEM . . . Y 10 156.889 160.542 121.568 1 76.18 ? CMB HEM 401 T 1 HETATM 20 C CAB HEM . . . Y 10 154.781 158.322 122.69 1 76.18 ? CAB HEM 401 T 1 HETATM 21 C CBB HEM . . . Y 10 155.319 158.955 123.734 1 76.18 ? CBB HEM 401 T 1 HETATM 22 C C1C HEM . . . Y 10 152.337 157.094 119.149 1 76.18 ? C1C HEM 401 T 1 HETATM 23 C C2C HEM . . . Y 10 151.15 156.278 119.233 1 76.18 ? C2C HEM 401 T 1 HETATM 24 C C3C HEM . . . Y 10 150.641 156.163 118.012 1 76.18 ? C3C HEM 401 T 1 HETATM 25 C C4C HEM . . . Y 10 151.479 156.904 117.106 1 76.18 ? C4C HEM 401 T 1 HETATM 26 C CMC HEM . . . Y 10 150.575 155.641 120.509 1 76.18 ? CMC HEM 401 T 1 HETATM 27 C CAC HEM . . . Y 10 149.364 155.387 117.647 1 76.18 ? CAC HEM 401 T 1 HETATM 28 C CBC HEM . . . Y 10 148.947 155.291 116.383 1 76.18 ? CBC HEM 401 T 1 HETATM 29 C C1D HEM . . . Y 10 152.117 157.679 114.898 1 76.18 ? C1D HEM 401 T 1 HETATM 30 C C2D HEM . . . Y 10 151.967 157.694 113.464 1 76.18 ? C2D HEM 401 T 1 HETATM 31 C C3D HEM . . . Y 10 152.949 158.436 112.968 1 76.18 ? C3D HEM 401 T 1 HETATM 32 C C4D HEM . . . Y 10 153.758 158.906 114.076 1 76.18 ? C4D HEM 401 T 1 HETATM 33 C CMD HEM . . . Y 10 150.852 156.979 112.676 1 76.18 ? CMD HEM 401 T 1 HETATM 34 C CAD HEM . . . Y 10 153.182 158.729 111.476 1 76.18 ? CAD HEM 401 T 1 HETATM 35 C CBD HEM . . . Y 10 153.427 160.223 111.31 1 76.18 ? CBD HEM 401 T 1 HETATM 36 C CGD HEM . . . Y 10 152.512 160.803 110.274 1 76.18 ? CGD HEM 401 T 1 HETATM 37 O O1D HEM . . . Y 10 152.431 162.053 110.209 1 76.18 ? O1D HEM 401 T 1 HETATM 38 O O2D HEM . . . Y 10 151.861 160.036 109.525 1 76.18 ? O2D HEM 401 T 1 HETATM 39 N NA HEM . . . Y 10 155.328 159.946 116.395 1 76.18 ? NA HEM 401 T 1 HETATM 40 N NB HEM . . . Y 10 154.564 159.056 119.003 1 76.18 ? NB HEM 401 T 1 HETATM 41 N NC HEM . . . Y 10 152.506 157.463 117.831 1 76.18 ? NC HEM 401 T 1 HETATM 42 N ND HEM . . . Y 10 153.214 158.43 115.247 1 76.18 ? ND HEM 401 T 1 HETATM 43 FE FE HEM . . . Y 10 153.785 158.865 117.144 1 76.18 ? FE HEM 401 T 1 HETATM 44 H HHB HEM . . . Y 10 156.927 161.345 118.921 1 76.18 ? HHB HEM 401 T 1 HETATM 45 H HHC HEM . . . Y 10 152.879 157.157 121.089 1 76.18 ? HHC HEM 401 T 1 HETATM 46 H HHD HEM . . . Y 10 150.35 157.004 115.469 1 76.18 ? HHD HEM 401 T 1 HETATM 47 H HMA HEM . . . Y 10 158.685 162.625 116.006 1 76.18 ? HMA HEM 401 T 1 HETATM 48 H HMAA HEM . . . Y 10 158.209 162.565 117.53 1 76.18 ? HMAA HEM 401 T 1 HETATM 49 H HMAB HEM . . . Y 10 157.515 163.588 116.508 1 76.18 ? HMAB HEM 401 T 1 HETATM 50 H HAA HEM . . . Y 10 157.448 161.377 113.159 1 76.18 ? HAA HEM 401 T 1 HETATM 51 H HAAA HEM . . . Y 10 157.581 162.749 113.941 1 76.18 ? HAAA HEM 401 T 1 HETATM 52 H HBA HEM . . . Y 10 155.1 162.847 113.592 1 76.18 ? HBA HEM 401 T 1 HETATM 53 H HBAA HEM . . . Y 10 155.403 161.846 112.406 1 76.18 ? HBAA HEM 401 T 1 HETATM 54 H HMB HEM . . . Y 10 157.598 160.807 120.961 1 76.18 ? HMB HEM 401 T 1 HETATM 55 H HMBA HEM . . . Y 10 157.262 159.987 122.27 1 76.18 ? HMBA HEM 401 T 1 HETATM 56 H HMBB HEM . . . Y 10 156.488 161.337 121.954 1 76.18 ? HMBB HEM 401 T 1 HETATM 57 H HAB HEM . . . Y 10 154.279 157.517 122.84 1 76.18 ? HAB HEM 401 T 1 HETATM 58 H HBB HEM . . . Y 10 155.409 158.495 124.581 1 76.18 ? HBB HEM 401 T 1 HETATM 59 H HBBA HEM . . . Y 10 155.519 159.901 123.679 1 76.18 ? HBBA HEM 401 T 1 HETATM 60 H HMC HEM . . . Y 10 149.613 155.559 120.423 1 76.18 ? HMC HEM 401 T 1 HETATM 61 H HMCA HEM . . . Y 10 150.787 156.204 121.269 1 76.18 ? HMCA HEM 401 T 1 HETATM 62 H HMCB HEM . . . Y 10 150.969 154.765 120.641 1 76.18 ? HMCB HEM 401 T 1 HETATM 63 H HAC HEM . . . Y 10 148.828 155.005 118.342 1 76.18 ? HAC HEM 401 T 1 HETATM 64 H HBC HEM . . . Y 10 148.027 155.051 116.212 1 76.18 ? HBC HEM 401 T 1 HETATM 65 H HBCA HEM . . . Y 10 149.595 155.112 115.689 1 76.18 ? HBCA HEM 401 T 1 HETATM 66 H HMD HEM . . . Y 10 150.79 156.048 112.974 1 76.18 ? HMD HEM 401 T 1 HETATM 67 H HMDA HEM . . . Y 10 151.047 156.999 111.717 1 76.18 ? HMDA HEM 401 T 1 HETATM 68 H HMDB HEM . . . Y 10 149.997 157.426 112.843 1 76.18 ? HMDB HEM 401 T 1 HETATM 69 H HAD HEM . . . Y 10 152.408 158.452 110.966 1 76.18 ? HAD HEM 401 T 1 HETATM 70 H HADA HEM . . . Y 10 153.959 158.239 111.167 1 76.18 ? HADA HEM 401 T 1 HETATM 71 H HBD HEM . . . Y 10 154.348 160.369 111.043 1 76.18 ? HBD HEM 401 T 1 HETATM 72 H HBDA HEM . . . Y 10 153.262 160.677 112.15 1 76.18 ? HBDA HEM 401 T 1 HETATM 73 H HHA HEM . . . Y 10 155.334 159.739 113.136 1 76.18 ? HHA HEM 401 T 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 73 #