data_7RJA
#
_model_server_result.job_id            dZL8nggjZtteJvZ1LIEIyA 
_model_server_result.datetime_utc      '2024-11-21 14:27:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":403}' 
#
_entry.id    7RJA 
#
_exptl.entry_id    7RJA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              863.343 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UBIQUINONE-10 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RJA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 U N N 
? 11 V N N 
? 11 AA N N 
? 11 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 O SG CYS 89 R CYS 89 1_555 O SG CYS 111 R CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B NE2 GLN 22 K GLN 22 1_555 V C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 B OE1 GLN 43 K GLN 43 1_555 S C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale3 C SG CYS 82 D CYS 82 1_555 W CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale4 C SG CYS 85 D CYS 85 1_555 W CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
covale ? covale5 K OE1 GLN 43 T GLN 43 1_555 Y C1B HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
covale ? covale6 L SG CYS 82 N CYS 82 1_555 CA CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
covale ? covale7 L SG CYS 85 N CYS 85 1_555 CA CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 W FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc6 H O HIS 158 C HIS 158 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc7 K NE2 HIS 82 T HIS 82 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc8 K NE2 HIS 96 T HIS 96 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc9 K NE2 HIS 183 T HIS 183 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc10 K NE2 HIS 197 T HIS 197 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc11 Q O HIS 158 M HIS 158 1_555 DA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc12 Q O HIS 158 M HIS 158 1_555 DA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
#
_chem_comp.formula           'C59 H90 O4' 
_chem_comp.formula_weight    863.343 
_chem_comp.id                U10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UBIQUINONE-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Coenzyme Q10' 
#
_atom_sites.entry_id                     7RJA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 10 HEM K 1 401 401 HEM HEM . 
T 10 HEM K 1 402 402 HEM HEM . 
U 11 U10 K 1 403 408 U10 U10 . 
V 11 U10 K 1 404 409 U10 U10 . 
W 12 HEC D 1 301 3 HEC HEC . 
X 13 FES C 1 301 4 FES FES . 
Y 10 HEM T 1 401 401 HEM HEM . 
Z 10 HEM T 1 402 402 HEM HEM . 
AA 11 U10 T 1 403 406 U10 U10 . 
BA 11 U10 T 1 404 407 U10 U10 . 
CA 12 HEC N 1 301 3 HEC HEC . 
DA 13 FES M 1 301 4 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 U10 . . . U 11 127.273 139.646 114.958 1 85.19 ? C1 U10 403 K 1 
HETATM 2 C C2 U10 . . . U 11 126.956 139.629 113.603 1 85.19 ? C2 U10 403 K 1 
HETATM 3 C C3 U10 . . . U 11 127.961 139.536 112.648 1 85.19 ? C3 U10 403 K 1 
HETATM 4 C C4 U10 . . . U 11 129.287 139.478 113.046 1 85.19 ? C4 U10 403 K 1 
HETATM 5 C C5 U10 . . . U 11 129.592 139.494 114.395 1 85.19 ? C5 U10 403 K 1 
HETATM 6 C C6 U10 . . . U 11 128.604 139.586 115.355 1 85.19 ? C6 U10 403 K 1 
HETATM 7 C C1M U10 . . . U 11 126.176 139.743 115.973 1 85.19 ? C1M U10 403 K 1 
HETATM 8 C C3M U10 . . . U 11 127.417 139.902 110.478 1 85.19 ? C3M U10 403 K 1 
HETATM 9 C C4M U10 . . . U 11 130.917 139.588 111.43 1 85.19 ? C4M U10 403 K 1 
HETATM 10 C C7 U10 . . . U 11 129.06 139.918 116.756 1 85.19 ? C7 U10 403 K 1 
HETATM 11 C C8 U10 . . . U 11 129.698 141.291 116.771 1 85.19 ? C8 U10 403 K 1 
HETATM 12 C C9 U10 . . . U 11 129.876 142.075 118.005 1 85.19 ? C9 U10 403 K 1 
HETATM 13 C C10 U10 . . . U 11 129.54 141.495 119.349 1 85.19 ? C10 U10 403 K 1 
HETATM 14 C C11 U10 . . . U 11 130.401 143.49 117.892 1 85.19 ? C11 U10 403 K 1 
HETATM 15 C C12 U10 . . . U 11 130.928 143.988 119.234 1 85.19 ? C12 U10 403 K 1 
HETATM 16 C C13 U10 . . . U 11 131.243 145.464 119.172 1 85.19 ? C13 U10 403 K 1 
HETATM 17 C C14 U10 . . . U 11 131.029 146.321 120.352 1 85.19 ? C14 U10 403 K 1 
HETATM 18 C C15 U10 . . . U 11 130.402 145.766 121.597 1 85.19 ? C15 U10 403 K 1 
HETATM 19 C C16 U10 . . . U 11 131.447 147.771 120.312 1 85.19 ? C16 U10 403 K 1 
HETATM 20 C C17 U10 . . . U 11 132.568 148.021 121.314 1 85.19 ? C17 U10 403 K 1 
HETATM 21 C C18 U10 . . . U 11 132.709 149.505 121.545 1 85.19 ? C18 U10 403 K 1 
HETATM 22 C C19 U10 . . . U 11 133.76 150.02 122.433 1 85.19 ? C19 U10 403 K 1 
HETATM 23 C C20 U10 . . . U 11 134.694 149.072 123.123 1 85.19 ? C20 U10 403 K 1 
HETATM 24 C C21 U10 . . . U 11 133.909 151.509 122.642 1 85.19 ? C21 U10 403 K 1 
HETATM 25 O O2 U10 . . . U 11 125.843 140.007 113.244 1 85.19 ? O2 U10 403 K 1 
HETATM 26 O O3 U10 . . . U 11 127.689 139.046 111.558 1 85.19 ? O3 U10 403 K 1 
HETATM 27 O O4 U10 . . . U 11 130.087 138.889 112.325 1 85.19 ? O4 U10 403 K 1 
HETATM 28 O O5 U10 . . . U 11 130.77 139.553 114.739 1 85.19 ? O5 U10 403 K 1 
HETATM 29 H H1M1 U10 . . . U 11 125.28 140.163 115.518 1 85.19 ? H1M1 U10 403 K 1 
HETATM 30 H H1M2 U10 . . . U 11 125.95 138.75 116.361 1 85.19 ? H1M2 U10 403 K 1 
HETATM 31 H H3M1 U10 . . . U 11 126.829 139.379 109.724 1 85.19 ? H3M1 U10 403 K 1 
HETATM 32 H H3M2 U10 . . . U 11 128.361 140.234 110.048 1 85.19 ? H3M2 U10 403 K 1 
HETATM 33 H H3M3 U10 . . . U 11 126.864 140.77 110.835 1 85.19 ? H3M3 U10 403 K 1 
HETATM 34 H H4M1 U10 . . . U 11 130.576 140.62 111.336 1 85.19 ? H4M1 U10 403 K 1 
HETATM 35 H H4M2 U10 . . . U 11 130.889 139.092 110.463 1 85.19 ? H4M2 U10 403 K 1 
HETATM 36 H H4M3 U10 . . . U 11 131.938 139.578 111.813 1 85.19 ? H4M3 U10 403 K 1 
HETATM 37 H H71 U10 . . . U 11 129.787 139.175 117.079 1 85.19 ? H71 U10 403 K 1 
HETATM 38 H H72 U10 . . . U 11 128.227 139.874 117.447 1 85.19 ? H72 U10 403 K 1 
HETATM 39 H H8 U10 . . . U 11 130.098 141.697 115.842 1 85.19 ? H8 U10 403 K 1 
HETATM 40 H H101 U10 . . . U 11 128.725 142.063 119.793 1 85.19 ? H101 U10 403 K 1 
HETATM 41 H H102 U10 . . . U 11 130.412 141.536 120.001 1 85.19 ? H102 U10 403 K 1 
HETATM 42 H H103 U10 . . . U 11 129.224 140.461 119.243 1 85.19 ? H103 U10 403 K 1 
HETATM 43 H H111 U10 . . . U 11 129.604 144.148 117.547 1 85.19 ? H111 U10 403 K 1 
HETATM 44 H H112 U10 . . . U 11 131.204 143.518 117.155 1 85.19 ? H112 U10 403 K 1 
HETATM 45 H H121 U10 . . . U 11 131.827 143.433 119.504 1 85.19 ? H121 U10 403 K 1 
HETATM 46 H H122 U10 . . . U 11 130.18 143.816 120.004 1 85.19 ? H122 U10 403 K 1 
HETATM 47 H H13 U10 . . . U 11 131.789 145.859 118.315 1 85.19 ? H13 U10 403 K 1 
HETATM 48 H H151 U10 . . . U 11 130.319 146.55 122.35 1 85.19 ? H151 U10 403 K 1 
HETATM 49 H H152 U10 . . . U 11 131.021 144.955 121.981 1 85.19 ? H152 U10 403 K 1 
HETATM 50 H H153 U10 . . . U 11 129.41 145.382 121.363 1 85.19 ? H153 U10 403 K 1 
HETATM 51 H H161 U10 . . . U 11 130.592 148.402 120.555 1 85.19 ? H161 U10 403 K 1 
HETATM 52 H H162 U10 . . . U 11 131.784 148.031 119.308 1 85.19 ? H162 U10 403 K 1 
HETATM 53 H H171 U10 . . . U 11 133.504 147.62 120.927 1 85.19 ? H171 U10 403 K 1 
HETATM 54 H H172 U10 . . . U 11 132.348 147.522 122.258 1 85.19 ? H172 U10 403 K 1 
HETATM 55 H H18 U10 . . . U 11 131.953 150.186 121.151 1 85.19 ? H18 U10 403 K 1 
HETATM 56 H H201 U10 . . . U 11 135.344 148.599 122.384 1 85.19 ? H201 U10 403 K 1 
HETATM 57 H H202 U10 . . . U 11 134.111 148.3 123.628 1 85.19 ? H202 U10 403 K 1 
HETATM 58 H H203 U10 . . . U 11 135.291 149.617 123.856 1 85.19 ? H203 U10 403 K 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           58 
#