data_7RJA # _model_server_result.job_id hqHBNOBsAr5lW7-1MozGvw _model_server_result.datetime_utc '2025-04-01 12:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":404}' # _entry.id 7RJA # _exptl.entry_id 7RJA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RJA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 U N N ? 11 V N N ? 11 AA N N ? 11 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 O SG CYS 89 R CYS 89 1_555 O SG CYS 111 R CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C SG CYS 82 D CYS 82 1_555 W CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale2 C SG CYS 85 D CYS 85 1_555 W CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale3 L SG CYS 82 N CYS 82 1_555 CA CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale4 L SG CYS 85 N CYS 85 1_555 CA CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 W FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc6 H O HIS 158 C HIS 158 1_555 X FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 K NE2 HIS 82 T HIS 82 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc8 K NE2 HIS 96 T HIS 96 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc9 K NE2 HIS 183 T HIS 183 1_555 Y FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 K NE2 HIS 197 T HIS 197 1_555 Z FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 Q O HIS 158 M HIS 158 1_555 DA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc12 Q O HIS 158 M HIS 158 1_555 DA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 526 n n C1 C6 U10 doub 527 n n C1 C1M U10 sing 528 n n C2 C3 U10 sing 529 n n C2 O2 U10 doub 530 n n C3 C4 U10 doub 531 n n C3 O3 U10 sing 532 n n C4 C5 U10 sing 533 n n C4 O4 U10 sing 534 n n C5 C6 U10 sing 535 n n C5 O5 U10 doub 536 n n C6 C7 U10 sing 537 n n C1M H1M1 U10 sing 538 n n C1M H1M2 U10 sing 539 n n C1M H1M3 U10 sing 540 n n C3M O3 U10 sing 541 n n C3M H3M1 U10 sing 542 n n C3M H3M2 U10 sing 543 n n C3M H3M3 U10 sing 544 n n C4M O4 U10 sing 545 n n C4M H4M1 U10 sing 546 n n C4M H4M2 U10 sing 547 n n C4M H4M3 U10 sing 548 n n C7 C8 U10 sing 549 n n C7 H71 U10 sing 550 n n C7 H72 U10 sing 551 n n C8 C9 U10 doub 552 e n C8 H8 U10 sing 553 n n C9 C10 U10 sing 554 n n C9 C11 U10 sing 555 n n C10 H101 U10 sing 556 n n C10 H102 U10 sing 557 n n C10 H103 U10 sing 558 n n C11 C12 U10 sing 559 n n C11 H111 U10 sing 560 n n C11 H112 U10 sing 561 n n C12 C13 U10 sing 562 n n C12 H121 U10 sing 563 n n C12 H122 U10 sing 564 n n C13 C14 U10 doub 565 e n C13 H13 U10 sing 566 n n C14 C15 U10 sing 567 n n C14 C16 U10 sing 568 n n C15 H151 U10 sing 569 n n C15 H152 U10 sing 570 n n C15 H153 U10 sing 571 n n C16 C17 U10 sing 572 n n C16 H161 U10 sing 573 n n C16 H162 U10 sing 574 n n C17 C18 U10 sing 575 n n C17 H171 U10 sing 576 n n C17 H172 U10 sing 577 n n C18 C19 U10 doub 578 e n C18 H18 U10 sing 579 n n C19 C20 U10 sing 580 n n C19 C21 U10 sing 581 n n C20 H201 U10 sing 582 n n C20 H202 U10 sing 583 n n C20 H203 U10 sing 584 n n C21 C22 U10 sing 585 n n C21 H211 U10 sing 586 n n C21 H212 U10 sing 587 n n C22 C23 U10 sing 588 n n C22 H221 U10 sing 589 n n C22 H222 U10 sing 590 n n C23 C24 U10 doub 591 e n C23 H23 U10 sing 592 n n C24 C25 U10 sing 593 n n C24 C26 U10 sing 594 n n C25 H251 U10 sing 595 n n C25 H252 U10 sing 596 n n C25 H253 U10 sing 597 n n C26 C27 U10 sing 598 n n C26 H261 U10 sing 599 n n C26 H262 U10 sing 600 n n C27 C28 U10 sing 601 n n C27 H271 U10 sing 602 n n C27 H272 U10 sing 603 n n C28 C29 U10 doub 604 e n C28 H28 U10 sing 605 n n C29 C30 U10 sing 606 n n C29 C31 U10 sing 607 n n C30 H301 U10 sing 608 n n C30 H302 U10 sing 609 n n C30 H303 U10 sing 610 n n C31 C32 U10 sing 611 n n C31 H311 U10 sing 612 n n C31 H312 U10 sing 613 n n C32 C33 U10 sing 614 n n C32 H321 U10 sing 615 n n C32 H322 U10 sing 616 n n C33 C34 U10 doub 617 e n C33 H33 U10 sing 618 n n C34 C35 U10 sing 619 n n C34 C36 U10 sing 620 n n C35 H351 U10 sing 621 n n C35 H352 U10 sing 622 n n C35 H353 U10 sing 623 n n C36 C37 U10 sing 624 n n C36 H361 U10 sing 625 n n C36 H362 U10 sing 626 n n C37 C38 U10 sing 627 n n C37 H371 U10 sing 628 n n C37 H372 U10 sing 629 n n C38 C39 U10 doub 630 e n C38 H38 U10 sing 631 n n C39 C40 U10 sing 632 n n C39 C41 U10 sing 633 n n C40 H401 U10 sing 634 n n C40 H402 U10 sing 635 n n C40 H403 U10 sing 636 n n C41 C42 U10 sing 637 n n C41 H411 U10 sing 638 n n C41 H412 U10 sing 639 n n C42 C43 U10 sing 640 n n C42 H421 U10 sing 641 n n C42 H422 U10 sing 642 n n C43 C44 U10 doub 643 e n C43 H43 U10 sing 644 n n C44 C45 U10 sing 645 n n C44 C46 U10 sing 646 n n C45 H451 U10 sing 647 n n C45 H452 U10 sing 648 n n C45 H453 U10 sing 649 n n C46 C47 U10 sing 650 n n C46 H461 U10 sing 651 n n C46 H462 U10 sing 652 n n C47 C48 U10 sing 653 n n C47 H471 U10 sing 654 n n C47 H472 U10 sing 655 n n C48 C49 U10 doub 656 e n C48 H48 U10 sing 657 n n C49 C50 U10 sing 658 n n C49 C51 U10 sing 659 n n C50 H501 U10 sing 660 n n C50 H502 U10 sing 661 n n C50 H503 U10 sing 662 n n C51 C52 U10 sing 663 n n C51 H511 U10 sing 664 n n C51 H512 U10 sing 665 n n C52 C53 U10 sing 666 n n C52 H521 U10 sing 667 n n C52 H522 U10 sing 668 n n C53 C54 U10 doub 669 n n C53 H53 U10 sing 670 n n C54 C55 U10 sing 671 n n C54 C56 U10 sing 672 n n C55 H551 U10 sing 673 n n C55 H552 U10 sing 674 n n C55 H553 U10 sing 675 n n C56 H561 U10 sing 676 n n C56 H562 U10 sing 677 n n C56 H563 U10 sing 678 n n # _atom_sites.entry_id 7RJA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM K 1 401 401 HEM HEM . T 10 HEM K 1 402 402 HEM HEM . U 11 U10 K 1 403 408 U10 U10 . V 11 U10 K 1 404 409 U10 U10 . W 12 HEC D 1 301 3 HEC HEC . X 13 FES C 1 301 4 FES FES . Y 10 HEM T 1 401 401 HEM HEM . Z 10 HEM T 1 402 402 HEM HEM . AA 11 U10 T 1 403 406 U10 U10 . BA 11 U10 T 1 404 407 U10 U10 . CA 12 HEC N 1 301 3 HEC HEC . DA 13 FES M 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . V 11 145.979 135.691 139.927 1 79.65 ? C1 U10 404 K 1 HETATM 2 C C2 U10 . . . V 11 145.224 135.271 141.016 1 79.65 ? C2 U10 404 K 1 HETATM 3 C C3 U10 . . . V 11 144.685 133.989 141.057 1 79.65 ? C3 U10 404 K 1 HETATM 4 C C4 U10 . . . V 11 144.949 133.109 140.01 1 79.65 ? C4 U10 404 K 1 HETATM 5 C C5 U10 . . . V 11 145.702 133.532 138.923 1 79.65 ? C5 U10 404 K 1 HETATM 6 C C6 U10 . . . V 11 146.24 134.813 138.877 1 79.65 ? C6 U10 404 K 1 HETATM 7 C C1M U10 . . . V 11 146.524 137.09 139.927 1 79.65 ? C1M U10 404 K 1 HETATM 8 C C3M U10 . . . V 11 143.614 133.754 143.078 1 79.65 ? C3M U10 404 K 1 HETATM 9 C C4M U10 . . . V 11 144.338 131.078 140.917 1 79.65 ? C4M U10 404 K 1 HETATM 10 C C7 U10 . . . V 11 147.402 135.052 137.936 1 79.65 ? C7 U10 404 K 1 HETATM 11 C C8 U10 . . . V 11 146.897 135.741 136.69 1 79.65 ? C8 U10 404 K 1 HETATM 12 C C9 U10 . . . V 11 147.725 135.83 135.478 1 79.65 ? C9 U10 404 K 1 HETATM 13 C C10 U10 . . . V 11 149.172 135.432 135.522 1 79.65 ? C10 U10 404 K 1 HETATM 14 C C11 U10 . . . V 11 147.05 136.267 134.196 1 79.65 ? C11 U10 404 K 1 HETATM 15 C C12 U10 . . . V 11 147.836 137.282 133.373 1 79.65 ? C12 U10 404 K 1 HETATM 16 C C13 U10 . . . V 11 147.944 138.609 134.079 1 79.65 ? C13 U10 404 K 1 HETATM 17 C C14 U10 . . . V 11 148.344 139.806 133.317 1 79.65 ? C14 U10 404 K 1 HETATM 18 C C15 U10 . . . V 11 148.485 139.751 131.824 1 79.65 ? C15 U10 404 K 1 HETATM 19 C C16 U10 . . . V 11 148.609 141.107 134.037 1 79.65 ? C16 U10 404 K 1 HETATM 20 O O2 U10 . . . V 11 145.227 135.952 142.039 1 79.65 ? O2 U10 404 K 1 HETATM 21 O O3 U10 . . . V 11 143.628 133.842 141.671 1 79.65 ? O3 U10 404 K 1 HETATM 22 O O4 U10 . . . V 11 144.308 132.062 139.905 1 79.65 ? O4 U10 404 K 1 HETATM 23 O O5 U10 . . . V 11 145.925 132.745 138.006 1 79.65 ? O5 U10 404 K 1 HETATM 24 H H1M1 U10 . . . V 11 147.397 137.144 140.575 1 79.65 ? H1M1 U10 404 K 1 HETATM 25 H H1M2 U10 . . . V 11 145.76 137.763 140.319 1 79.65 ? H1M2 U10 404 K 1 HETATM 26 H H1M3 U10 . . . V 11 146.784 137.399 138.915 1 79.65 ? H1M3 U10 404 K 1 HETATM 27 H H4M1 U10 . . . V 11 145.074 131.349 141.673 1 79.65 ? H4M1 U10 404 K 1 HETATM 28 H H4M2 U10 . . . V 11 144.608 130.117 140.478 1 79.65 ? H4M2 U10 404 K 1 HETATM 29 H H4M3 U10 . . . V 11 143.354 130.999 141.379 1 79.65 ? H4M3 U10 404 K 1 HETATM 30 H H71 U10 . . . V 11 147.864 134.102 137.669 1 79.65 ? H71 U10 404 K 1 HETATM 31 H H72 U10 . . . V 11 148.159 135.667 138.421 1 79.65 ? H72 U10 404 K 1 HETATM 32 H H8 U10 . . . V 11 146.047 136.416 136.785 1 79.65 ? H8 U10 404 K 1 HETATM 33 H H101 U10 . . . V 11 149.256 134.361 135.336 1 79.65 ? H101 U10 404 K 1 HETATM 34 H H102 U10 . . . V 11 149.568 135.642 136.514 1 79.65 ? H102 U10 404 K 1 HETATM 35 H H103 U10 . . . V 11 149.751 135.988 134.786 1 79.65 ? H103 U10 404 K 1 HETATM 36 H H111 U10 . . . V 11 146.078 136.695 134.443 1 79.65 ? H111 U10 404 K 1 HETATM 37 H H112 U10 . . . V 11 146.867 135.386 133.582 1 79.65 ? H112 U10 404 K 1 HETATM 38 H H121 U10 . . . V 11 147.326 137.439 132.425 1 79.65 ? H121 U10 404 K 1 HETATM 39 H H122 U10 . . . V 11 148.83 136.9 133.148 1 79.65 ? H122 U10 404 K 1 HETATM 40 H H13 U10 . . . V 11 147.934 138.642 135.168 1 79.65 ? H13 U10 404 K 1 HETATM 41 H H151 U10 . . . V 11 149.054 140.615 131.482 1 79.65 ? H151 U10 404 K 1 HETATM 42 H H152 U10 . . . V 11 147.496 139.758 131.365 1 79.65 ? H152 U10 404 K 1 HETATM 43 H H153 U10 . . . V 11 149.012 138.841 131.539 1 79.65 ? H153 U10 404 K 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #