data_7RJB # _model_server_result.job_id Pxyn4KYGes9ZOcjAZJv9ig _model_server_result.datetime_utc '2025-07-06 18:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 7RJB # _exptl.entry_id 7RJB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C SG CYS 82 D CYS 82 1_555 O CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? covale ? covale2 C SG CYS 85 D CYS 85 1_555 O CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 K FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 L FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 K FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 L FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 O FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 J O LEU 159 E LEU 159 1_555 P FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 133 n n FE NB HEC sing 134 n n FE NC HEC sing 135 n n FE ND HEC sing 136 n n CHA C1A HEC doub 137 n n CHA C4D HEC sing 138 n n CHA HHA HEC sing 139 n n CHB C4A HEC doub 140 n n CHB C1B HEC sing 141 n n CHB HHB HEC sing 142 n n CHC C4B HEC doub 143 n n CHC C1C HEC sing 144 n n CHC HHC HEC sing 145 n n CHD C4C HEC doub 146 n n CHD C1D HEC sing 147 n n CHD HHD HEC sing 148 n n NA C1A HEC sing 149 n y NA C4A HEC sing 150 n y C1A C2A HEC sing 151 n y C2A C3A HEC doub 152 n y C2A CAA HEC sing 153 n n C3A C4A HEC sing 154 n y C3A CMA HEC sing 155 n n CMA HMA1 HEC sing 156 n n CMA HMA2 HEC sing 157 n n CMA HMA3 HEC sing 158 n n CAA CBA HEC sing 159 n n CAA HAA1 HEC sing 160 n n CAA HAA2 HEC sing 161 n n CBA CGA HEC sing 162 n n CBA HBA1 HEC sing 163 n n CBA HBA2 HEC sing 164 n n CGA O1A HEC doub 165 n n CGA O2A HEC sing 166 n n O2A H2A HEC sing 167 n n NB C1B HEC sing 168 n y NB C4B HEC sing 169 n y C1B C2B HEC doub 170 n y C2B C3B HEC sing 171 n y C2B CMB HEC sing 172 n n C3B C4B HEC sing 173 n y C3B CAB HEC doub 174 e n CMB HMB1 HEC sing 175 n n CMB HMB2 HEC sing 176 n n CMB HMB3 HEC sing 177 n n CAB CBB HEC sing 178 n n CAB HAB HEC sing 179 n n CBB HBB1 HEC sing 180 n n CBB HBB2 HEC sing 181 n n CBB HBB3 HEC sing 182 n n NC C1C HEC sing 183 n y NC C4C HEC sing 184 n y C1C C2C HEC doub 185 n y C2C C3C HEC sing 186 n y C2C CMC HEC sing 187 n n C3C C4C HEC sing 188 n y C3C CAC HEC doub 189 e n CMC HMC1 HEC sing 190 n n CMC HMC2 HEC sing 191 n n CMC HMC3 HEC sing 192 n n CAC CBC HEC sing 193 n n CAC HAC HEC sing 194 n n CBC HBC1 HEC sing 195 n n CBC HBC2 HEC sing 196 n n CBC HBC3 HEC sing 197 n n ND C1D HEC sing 198 n y ND C4D HEC sing 199 n y C1D C2D HEC doub 200 n y C2D C3D HEC sing 201 n y C2D CMD HEC sing 202 n n C3D C4D HEC doub 203 n y C3D CAD HEC sing 204 n n CMD HMD1 HEC sing 205 n n CMD HMD2 HEC sing 206 n n CMD HMD3 HEC sing 207 n n CAD CBD HEC sing 208 n n CAD HAD1 HEC sing 209 n n CAD HAD2 HEC sing 210 n n CBD CGD HEC sing 211 n n CBD HBD1 HEC sing 212 n n CBD HBD2 HEC sing 213 n n CGD O1D HEC doub 214 n n CGD O2D HEC sing 215 n n O2D H2D HEC sing 216 n n # _atom_sites.entry_id 7RJB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 10 HEM K 1 401 401 HEM HEM . L 10 HEM K 1 402 402 HEM HEM . M 11 U10 K 1 403 408 U10 U10 . N 11 U10 K 1 404 409 U10 U10 . O 12 HEC D 1 301 503 HEC HEC . P 13 FES E 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . O 12 137.98 123.579 86.56 1 90.62 ? FE HEC 301 D 1 HETATM 2 C CHA HEC . . . O 12 135.623 125.361 88.306 1 90.62 ? CHA HEC 301 D 1 HETATM 3 C CHB HEC . . . O 12 139.406 122.64 89.551 1 90.62 ? CHB HEC 301 D 1 HETATM 4 C CHC HEC . . . O 12 140.18 121.649 84.879 1 90.62 ? CHC HEC 301 D 1 HETATM 5 C CHD HEC . . . O 12 136.824 124.911 83.642 1 90.62 ? CHD HEC 301 D 1 HETATM 6 N NA HEC . . . O 12 137.632 123.982 88.549 1 90.62 ? NA HEC 301 D 1 HETATM 7 C C1A HEC . . . O 12 136.524 124.635 89.038 1 90.62 ? C1A HEC 301 D 1 HETATM 8 C C2A HEC . . . O 12 136.459 124.429 90.465 1 90.62 ? C2A HEC 301 D 1 HETATM 9 C C3A HEC . . . O 12 137.504 123.688 90.818 1 90.62 ? C3A HEC 301 D 1 HETATM 10 C C4A HEC . . . O 12 138.257 123.386 89.623 1 90.62 ? C4A HEC 301 D 1 HETATM 11 C CMA HEC . . . O 12 137.848 123.215 92.241 1 90.62 ? CMA HEC 301 D 1 HETATM 12 C CAA HEC . . . O 12 135.373 125.016 91.391 1 90.62 ? CAA HEC 301 D 1 HETATM 13 C CBA HEC . . . O 12 134.599 123.923 92.111 1 90.62 ? CBA HEC 301 D 1 HETATM 14 C CGA HEC . . . O 12 133.633 124.579 93.057 1 90.62 ? CGA HEC 301 D 1 HETATM 15 O O1A HEC . . . O 12 133.654 125.83 93.159 1 90.62 ? O1A HEC 301 D 1 HETATM 16 O O2A HEC . . . O 12 132.844 123.855 93.711 1 90.62 ? O2A HEC 301 D 1 HETATM 17 N NB HEC . . . O 12 139.539 122.41 87.107 1 90.62 ? NB HEC 301 D 1 HETATM 18 C C1B HEC . . . O 12 139.9 122.086 88.397 1 90.62 ? C1B HEC 301 D 1 HETATM 19 C C2B HEC . . . O 12 140.888 121.041 88.337 1 90.62 ? C2B HEC 301 D 1 HETATM 20 C C3B HEC . . . O 12 141.12 120.754 87.059 1 90.62 ? C3B HEC 301 D 1 HETATM 21 C C4B HEC . . . O 12 140.27 121.612 86.251 1 90.62 ? C4B HEC 301 D 1 HETATM 22 C CMB HEC . . . O 12 141.553 120.397 89.567 1 90.62 ? CMB HEC 301 D 1 HETATM 23 C CAB HEC . . . O 12 142.115 119.674 86.578 1 90.62 ? CAB HEC 301 D 1 HETATM 24 C CBB HEC . . . O 12 142.472 119.577 85.298 1 90.62 ? CBB HEC 301 D 1 HETATM 25 N NC HEC . . . O 12 138.377 123.295 84.618 1 90.62 ? NC HEC 301 D 1 HETATM 26 C C1C HEC . . . O 12 139.413 122.52 84.145 1 90.62 ? C1C HEC 301 D 1 HETATM 27 C C2C HEC . . . O 12 139.548 122.779 82.732 1 90.62 ? C2C HEC 301 D 1 HETATM 28 C C3C HEC . . . O 12 138.637 123.681 82.377 1 90.62 ? C3C HEC 301 D 1 HETATM 29 C C4C HEC . . . O 12 137.872 124.023 83.559 1 90.62 ? C4C HEC 301 D 1 HETATM 30 C CMC HEC . . . O 12 140.591 122.122 81.807 1 90.62 ? CMC HEC 301 D 1 HETATM 31 C CAC HEC . . . O 12 138.453 124.223 80.942 1 90.62 ? CAC HEC 301 D 1 HETATM 32 C CBC HEC . . . O 12 137.683 125.284 80.684 1 90.62 ? CBC HEC 301 D 1 HETATM 33 N ND HEC . . . O 12 136.545 124.944 86.084 1 90.62 ? ND HEC 301 D 1 HETATM 34 C C1D HEC . . . O 12 136.151 125.237 84.797 1 90.62 ? C1D HEC 301 D 1 HETATM 35 C C2D HEC . . . O 12 134.898 125.95 84.862 1 90.62 ? C2D HEC 301 D 1 HETATM 36 C C3D HEC . . . O 12 134.549 126.075 86.141 1 90.62 ? C3D HEC 301 D 1 HETATM 37 C C4D HEC . . . O 12 135.585 125.447 86.937 1 90.62 ? C4D HEC 301 D 1 HETATM 38 C CMD HEC . . . O 12 134.105 126.46 83.643 1 90.62 ? CMD HEC 301 D 1 HETATM 39 C CAD HEC . . . O 12 133.266 126.782 86.639 1 90.62 ? CAD HEC 301 D 1 HETATM 40 C CBD HEC . . . O 12 132.793 126.233 87.982 1 90.62 ? CBD HEC 301 D 1 HETATM 41 C CGD HEC . . . O 12 131.334 126.518 88.173 1 90.62 ? CGD HEC 301 D 1 HETATM 42 O O1D HEC . . . O 12 130.94 126.837 89.32 1 90.62 ? O1D HEC 301 D 1 HETATM 43 O O2D HEC . . . O 12 130.564 126.431 87.186 1 90.62 ? O2D HEC 301 D 1 HETATM 44 H HHA HEC . . . O 12 135.193 126.095 88.789 1 90.62 ? HHA HEC 301 D 1 HETATM 45 H HHB HEC . . . O 12 139.998 122.654 90.332 1 90.62 ? HHB HEC 301 D 1 HETATM 46 H HHC HEC . . . O 12 140.534 120.875 84.395 1 90.62 ? HHC HEC 301 D 1 HETATM 47 H HHD HEC . . . O 12 136.345 125.091 82.807 1 90.62 ? HHD HEC 301 D 1 HETATM 48 H HMA1 HEC . . . O 12 137.572 123.899 92.884 1 90.62 ? HMA1 HEC 301 D 1 HETATM 49 H HMA2 HEC . . . O 12 138.814 123.063 92.313 1 90.62 ? HMA2 HEC 301 D 1 HETATM 50 H HMA3 HEC . . . O 12 137.366 122.383 92.433 1 90.62 ? HMA3 HEC 301 D 1 HETATM 51 H HAA1 HEC . . . O 12 134.755 125.547 90.865 1 90.62 ? HAA1 HEC 301 D 1 HETATM 52 H HAA2 HEC . . . O 12 135.798 125.587 92.049 1 90.62 ? HAA2 HEC 301 D 1 HETATM 53 H HBA1 HEC . . . O 12 135.208 123.358 92.61 1 90.62 ? HBA1 HEC 301 D 1 HETATM 54 H HBA2 HEC . . . O 12 134.111 123.388 91.465 1 90.62 ? HBA2 HEC 301 D 1 HETATM 55 H HMB1 HEC . . . O 12 142.027 119.596 89.301 1 90.62 ? HMB1 HEC 301 D 1 HETATM 56 H HMB2 HEC . . . O 12 140.873 120.171 90.221 1 90.62 ? HMB2 HEC 301 D 1 HETATM 57 H HMB3 HEC . . . O 12 142.176 121.027 89.963 1 90.62 ? HMB3 HEC 301 D 1 HETATM 58 H HAB HEC . . . O 12 142.478 119.051 87.212 1 90.62 ? HAB HEC 301 D 1 HETATM 59 H HBB1 HEC . . . O 12 142.536 118.704 84.883 1 90.62 ? HBB1 HEC 301 D 1 HETATM 60 H HBB2 HEC . . . O 12 142.495 120.372 84.744 1 90.62 ? HBB2 HEC 301 D 1 HETATM 61 H HMC1 HEC . . . O 12 141.47 122.212 82.207 1 90.62 ? HMC1 HEC 301 D 1 HETATM 62 H HMC2 HEC . . . O 12 140.586 122.556 80.94 1 90.62 ? HMC2 HEC 301 D 1 HETATM 63 H HMC3 HEC . . . O 12 140.384 121.18 81.701 1 90.62 ? HMC3 HEC 301 D 1 HETATM 64 H HAC HEC . . . O 12 138.81 123.72 80.206 1 90.62 ? HAC HEC 301 D 1 HETATM 65 H HBC1 HEC . . . O 12 137.238 125.358 79.825 1 90.62 ? HBC1 HEC 301 D 1 HETATM 66 H HBC2 HEC . . . O 12 137.538 125.961 81.361 1 90.62 ? HBC2 HEC 301 D 1 HETATM 67 H HMD1 HEC . . . O 12 134.691 127.01 83.082 1 90.62 ? HMD1 HEC 301 D 1 HETATM 68 H HMD2 HEC . . . O 12 133.344 126.999 83.94 1 90.62 ? HMD2 HEC 301 D 1 HETATM 69 H HMD3 HEC . . . O 12 133.782 125.696 83.121 1 90.62 ? HMD3 HEC 301 D 1 HETATM 70 H HAD1 HEC . . . O 12 132.565 126.657 85.983 1 90.62 ? HAD1 HEC 301 D 1 HETATM 71 H HAD2 HEC . . . O 12 133.445 127.73 86.733 1 90.62 ? HAD2 HEC 301 D 1 HETATM 72 H HBD1 HEC . . . O 12 133.288 126.66 88.697 1 90.62 ? HBD1 HEC 301 D 1 HETATM 73 H HBD2 HEC . . . O 12 132.941 125.275 88.011 1 90.62 ? HBD2 HEC 301 D 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #