data_7RJB
#
_model_server_result.job_id            TKWrIk7cSytJHeqSSepWqQ 
_model_server_result.datetime_utc      '2025-07-05 03:49:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rjb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":403}' 
#
_entry.id    7RJB 
#
_exptl.entry_id    7RJB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              863.343 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UBIQUINONE-10 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 M N N 
? 11 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 C SG CYS 82 D CYS 82 1_555 O CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? 
covale ? covale2 C SG CYS 85 D CYS 85 1_555 O CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? 
metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 K FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 L FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 K FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 L FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 O FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc6 J O LEU 159 E LEU 159 1_555 P FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
#
_chem_comp.formula           'C59 H90 O4' 
_chem_comp.formula_weight    863.343 
_chem_comp.id                U10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UBIQUINONE-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Coenzyme Q10' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 U10 sing 526 n n 
C1 C6 U10 doub 527 n n 
C1 C1M U10 sing 528 n n 
C2 C3 U10 sing 529 n n 
C2 O2 U10 doub 530 n n 
C3 C4 U10 doub 531 n n 
C3 O3 U10 sing 532 n n 
C4 C5 U10 sing 533 n n 
C4 O4 U10 sing 534 n n 
C5 C6 U10 sing 535 n n 
C5 O5 U10 doub 536 n n 
C6 C7 U10 sing 537 n n 
C1M H1M1 U10 sing 538 n n 
C1M H1M2 U10 sing 539 n n 
C1M H1M3 U10 sing 540 n n 
C3M O3 U10 sing 541 n n 
C3M H3M1 U10 sing 542 n n 
C3M H3M2 U10 sing 543 n n 
C3M H3M3 U10 sing 544 n n 
C4M O4 U10 sing 545 n n 
C4M H4M1 U10 sing 546 n n 
C4M H4M2 U10 sing 547 n n 
C4M H4M3 U10 sing 548 n n 
C7 C8 U10 sing 549 n n 
C7 H71 U10 sing 550 n n 
C7 H72 U10 sing 551 n n 
C8 C9 U10 doub 552 e n 
C8 H8 U10 sing 553 n n 
C9 C10 U10 sing 554 n n 
C9 C11 U10 sing 555 n n 
C10 H101 U10 sing 556 n n 
C10 H102 U10 sing 557 n n 
C10 H103 U10 sing 558 n n 
C11 C12 U10 sing 559 n n 
C11 H111 U10 sing 560 n n 
C11 H112 U10 sing 561 n n 
C12 C13 U10 sing 562 n n 
C12 H121 U10 sing 563 n n 
C12 H122 U10 sing 564 n n 
C13 C14 U10 doub 565 e n 
C13 H13 U10 sing 566 n n 
C14 C15 U10 sing 567 n n 
C14 C16 U10 sing 568 n n 
C15 H151 U10 sing 569 n n 
C15 H152 U10 sing 570 n n 
C15 H153 U10 sing 571 n n 
C16 C17 U10 sing 572 n n 
C16 H161 U10 sing 573 n n 
C16 H162 U10 sing 574 n n 
C17 C18 U10 sing 575 n n 
C17 H171 U10 sing 576 n n 
C17 H172 U10 sing 577 n n 
C18 C19 U10 doub 578 e n 
C18 H18 U10 sing 579 n n 
C19 C20 U10 sing 580 n n 
C19 C21 U10 sing 581 n n 
C20 H201 U10 sing 582 n n 
C20 H202 U10 sing 583 n n 
C20 H203 U10 sing 584 n n 
C21 C22 U10 sing 585 n n 
C21 H211 U10 sing 586 n n 
C21 H212 U10 sing 587 n n 
C22 C23 U10 sing 588 n n 
C22 H221 U10 sing 589 n n 
C22 H222 U10 sing 590 n n 
C23 C24 U10 doub 591 e n 
C23 H23 U10 sing 592 n n 
C24 C25 U10 sing 593 n n 
C24 C26 U10 sing 594 n n 
C25 H251 U10 sing 595 n n 
C25 H252 U10 sing 596 n n 
C25 H253 U10 sing 597 n n 
C26 C27 U10 sing 598 n n 
C26 H261 U10 sing 599 n n 
C26 H262 U10 sing 600 n n 
C27 C28 U10 sing 601 n n 
C27 H271 U10 sing 602 n n 
C27 H272 U10 sing 603 n n 
C28 C29 U10 doub 604 e n 
C28 H28 U10 sing 605 n n 
C29 C30 U10 sing 606 n n 
C29 C31 U10 sing 607 n n 
C30 H301 U10 sing 608 n n 
C30 H302 U10 sing 609 n n 
C30 H303 U10 sing 610 n n 
C31 C32 U10 sing 611 n n 
C31 H311 U10 sing 612 n n 
C31 H312 U10 sing 613 n n 
C32 C33 U10 sing 614 n n 
C32 H321 U10 sing 615 n n 
C32 H322 U10 sing 616 n n 
C33 C34 U10 doub 617 e n 
C33 H33 U10 sing 618 n n 
C34 C35 U10 sing 619 n n 
C34 C36 U10 sing 620 n n 
C35 H351 U10 sing 621 n n 
C35 H352 U10 sing 622 n n 
C35 H353 U10 sing 623 n n 
C36 C37 U10 sing 624 n n 
C36 H361 U10 sing 625 n n 
C36 H362 U10 sing 626 n n 
C37 C38 U10 sing 627 n n 
C37 H371 U10 sing 628 n n 
C37 H372 U10 sing 629 n n 
C38 C39 U10 doub 630 e n 
C38 H38 U10 sing 631 n n 
C39 C40 U10 sing 632 n n 
C39 C41 U10 sing 633 n n 
C40 H401 U10 sing 634 n n 
C40 H402 U10 sing 635 n n 
C40 H403 U10 sing 636 n n 
C41 C42 U10 sing 637 n n 
C41 H411 U10 sing 638 n n 
C41 H412 U10 sing 639 n n 
C42 C43 U10 sing 640 n n 
C42 H421 U10 sing 641 n n 
C42 H422 U10 sing 642 n n 
C43 C44 U10 doub 643 e n 
C43 H43 U10 sing 644 n n 
C44 C45 U10 sing 645 n n 
C44 C46 U10 sing 646 n n 
C45 H451 U10 sing 647 n n 
C45 H452 U10 sing 648 n n 
C45 H453 U10 sing 649 n n 
C46 C47 U10 sing 650 n n 
C46 H461 U10 sing 651 n n 
C46 H462 U10 sing 652 n n 
C47 C48 U10 sing 653 n n 
C47 H471 U10 sing 654 n n 
C47 H472 U10 sing 655 n n 
C48 C49 U10 doub 656 e n 
C48 H48 U10 sing 657 n n 
C49 C50 U10 sing 658 n n 
C49 C51 U10 sing 659 n n 
C50 H501 U10 sing 660 n n 
C50 H502 U10 sing 661 n n 
C50 H503 U10 sing 662 n n 
C51 C52 U10 sing 663 n n 
C51 H511 U10 sing 664 n n 
C51 H512 U10 sing 665 n n 
C52 C53 U10 sing 666 n n 
C52 H521 U10 sing 667 n n 
C52 H522 U10 sing 668 n n 
C53 C54 U10 doub 669 n n 
C53 H53 U10 sing 670 n n 
C54 C55 U10 sing 671 n n 
C54 C56 U10 sing 672 n n 
C55 H551 U10 sing 673 n n 
C55 H552 U10 sing 674 n n 
C55 H553 U10 sing 675 n n 
C56 H561 U10 sing 676 n n 
C56 H562 U10 sing 677 n n 
C56 H563 U10 sing 678 n n 
#
_atom_sites.entry_id                     7RJB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 10 HEM K 1 401 401 HEM HEM . 
L 10 HEM K 1 402 402 HEM HEM . 
M 11 U10 K 1 403 408 U10 U10 . 
N 11 U10 K 1 404 409 U10 U10 . 
O 12 HEC D 1 301 503 HEC HEC . 
P 13 FES E 1 301 4 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 U10 . . . M 11 126.827 138.592 115.316 1 85.19 ? C1 U10 403 K 1 
HETATM 2 C C2 U10 . . . M 11 126.503 138.527 113.964 1 85.19 ? C2 U10 403 K 1 
HETATM 3 C C3 U10 . . . M 11 127.503 138.406 113.007 1 85.19 ? C3 U10 403 K 1 
HETATM 4 C C4 U10 . . . M 11 128.831 138.367 113.4 1 85.19 ? C4 U10 403 K 1 
HETATM 5 C C5 U10 . . . M 11 129.144 138.43 114.746 1 85.19 ? C5 U10 403 K 1 
HETATM 6 C C6 U10 . . . M 11 128.16 138.551 115.708 1 85.19 ? C6 U10 403 K 1 
HETATM 7 C C1M U10 . . . M 11 125.735 138.719 116.333 1 85.19 ? C1M U10 403 K 1 
HETATM 8 C C3M U10 . . . M 11 126.946 138.695 110.829 1 85.19 ? C3M U10 403 K 1 
HETATM 9 C C4M U10 . . . M 11 130.452 138.428 111.772 1 85.19 ? C4M U10 403 K 1 
HETATM 10 C C7 U10 . . . M 11 128.623 138.932 117.094 1 85.19 ? C7 U10 403 K 1 
HETATM 11 C C8 U10 . . . M 11 129.255 140.307 117.059 1 85.19 ? C8 U10 403 K 1 
HETATM 12 C C9 U10 . . . M 11 129.436 141.134 118.264 1 85.19 ? C9 U10 403 K 1 
HETATM 13 C C10 U10 . . . M 11 129.11 140.599 119.629 1 85.19 ? C10 U10 403 K 1 
HETATM 14 C C11 U10 . . . M 11 129.955 142.546 118.1 1 85.19 ? C11 U10 403 K 1 
HETATM 15 C C12 U10 . . . M 11 130.487 143.092 119.421 1 85.19 ? C12 U10 403 K 1 
HETATM 16 C C13 U10 . . . M 11 130.795 144.566 119.307 1 85.19 ? C13 U10 403 K 1 
HETATM 17 C C14 U10 . . . M 11 130.584 145.462 120.458 1 85.19 ? C14 U10 403 K 1 
HETATM 18 C C15 U10 . . . M 11 129.966 144.947 121.725 1 85.19 ? C15 U10 403 K 1 
HETATM 19 C C16 U10 . . . M 11 130.996 146.912 120.367 1 85.19 ? C16 U10 403 K 1 
HETATM 20 C C17 U10 . . . M 11 132.121 147.2 121.353 1 85.19 ? C17 U10 403 K 1 
HETATM 21 C C18 U10 . . . M 11 132.257 148.692 121.533 1 85.19 ? C18 U10 403 K 1 
HETATM 22 C C19 U10 . . . M 11 133.311 149.241 122.397 1 85.19 ? C19 U10 403 K 1 
HETATM 23 C C20 U10 . . . M 11 134.252 148.321 123.113 1 85.19 ? C20 U10 403 K 1 
HETATM 24 C C21 U10 . . . M 11 133.454 150.737 122.554 1 85.19 ? C21 U10 403 K 1 
HETATM 25 O O2 U10 . . . M 11 125.386 138.888 113.599 1 85.19 ? O2 U10 403 K 1 
HETATM 26 O O3 U10 . . . M 11 127.227 137.878 111.936 1 85.19 ? O3 U10 403 K 1 
HETATM 27 O O4 U10 . . . M 11 129.63 137.757 112.695 1 85.19 ? O4 U10 403 K 1 
HETATM 28 O O5 U10 . . . M 11 130.323 138.505 115.081 1 85.19 ? O5 U10 403 K 1 
HETATM 29 H H1M1 U10 . . . M 11 124.835 139.12 115.869 1 85.19 ? H1M1 U10 403 K 1 
HETATM 30 H H1M2 U10 . . . M 11 125.515 137.739 116.756 1 85.19 ? H1M2 U10 403 K 1 
HETATM 31 H H3M1 U10 . . . M 11 126.356 138.144 110.097 1 85.19 ? H3M1 U10 403 K 1 
HETATM 32 H H3M2 U10 . . . M 11 127.886 139.016 110.383 1 85.19 ? H3M2 U10 403 K 1 
HETATM 33 H H3M3 U10 . . . M 11 126.391 139.573 111.16 1 85.19 ? H3M3 U10 403 K 1 
HETATM 34 H H4M1 U10 . . . M 11 130.106 139.455 111.645 1 85.19 ? H4M1 U10 403 K 1 
HETATM 35 H H4M2 U10 . . . M 11 130.421 137.899 110.823 1 85.19 ? H4M2 U10 403 K 1 
HETATM 36 H H4M3 U10 . . . M 11 131.475 138.435 112.15 1 85.19 ? H4M3 U10 403 K 1 
HETATM 37 H H71 U10 . . . M 11 129.354 138.204 117.438 1 85.19 ? H71 U10 403 K 1 
HETATM 38 H H72 U10 . . . M 11 127.793 138.908 117.791 1 85.19 ? H72 U10 403 K 1 
HETATM 39 H H8 U10 . . . M 11 129.648 140.683 116.114 1 85.19 ? H8 U10 403 K 1 
HETATM 40 H H101 U10 . . . M 11 128.295 141.178 120.058 1 85.19 ? H101 U10 403 K 1 
HETATM 41 H H102 U10 . . . M 11 129.985 140.665 120.274 1 85.19 ? H102 U10 403 K 1 
HETATM 42 H H103 U10 . . . M 11 128.798 139.56 119.56 1 85.19 ? H103 U10 403 K 1 
HETATM 43 H H111 U10 . . . M 11 129.153 143.189 117.737 1 85.19 ? H111 U10 403 K 1 
HETATM 44 H H112 U10 . . . M 11 130.754 142.552 117.358 1 85.19 ? H112 U10 403 K 1 
HETATM 45 H H121 U10 . . . M 11 131.39 142.55 119.705 1 85.19 ? H121 U10 403 K 1 
HETATM 46 H H122 U10 . . . M 11 129.744 142.943 120.201 1 85.19 ? H122 U10 403 K 1 
HETATM 47 H H13 U10 . . . M 11 131.335 144.934 118.434 1 85.19 ? H13 U10 403 K 1 
HETATM 48 H H151 U10 . . . M 11 129.884 145.756 122.451 1 85.19 ? H151 U10 403 K 1 
HETATM 49 H H152 U10 . . . M 11 130.591 144.152 122.133 1 85.19 ? H152 U10 403 K 1 
HETATM 50 H H153 U10 . . . M 11 128.974 144.552 121.51 1 85.19 ? H153 U10 403 K 1 
HETATM 51 H H161 U10 . . . M 11 130.139 147.547 120.593 1 85.19 ? H161 U10 403 K 1 
HETATM 52 H H162 U10 . . . M 11 131.326 147.138 119.352 1 85.19 ? H162 U10 403 K 1 
HETATM 53 H H171 U10 . . . M 11 133.057 146.79 120.975 1 85.19 ? H171 U10 403 K 1 
HETATM 54 H H172 U10 . . . M 11 131.908 146.733 122.315 1 85.19 ? H172 U10 403 K 1 
HETATM 55 H H18 U10 . . . M 11 131.496 149.356 121.12 1 85.19 ? H18 U10 403 K 1 
HETATM 56 H H201 U10 . . . M 11 134.9 147.825 122.387 1 85.19 ? H201 U10 403 K 1 
HETATM 57 H H202 U10 . . . M 11 133.675 147.564 123.648 1 85.19 ? H202 U10 403 K 1 
HETATM 58 H H203 U10 . . . M 11 134.851 148.893 123.824 1 85.19 ? H203 U10 403 K 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           58 
#