data_7RJB # _model_server_result.job_id z1tCe5Pcw80S_K1MY7nE_g _model_server_result.datetime_utc '2025-07-03 21:26:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":404}' # _entry.id 7RJB # _exptl.entry_id 7RJB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 F SG CYS 89 H CYS 89 1_555 F SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C SG CYS 82 D CYS 82 1_555 O CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? covale ? covale2 C SG CYS 85 D CYS 85 1_555 O CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc1 B NE2 HIS 82 K HIS 82 1_555 K FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 B NE2 HIS 96 K HIS 96 1_555 L FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 B NE2 HIS 183 K HIS 183 1_555 K FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 B NE2 HIS 197 K HIS 197 1_555 L FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 C NE2 HIS 86 D HIS 86 1_555 O FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 J O LEU 159 E LEU 159 1_555 P FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 526 n n C1 C6 U10 doub 527 n n C1 C1M U10 sing 528 n n C2 C3 U10 sing 529 n n C2 O2 U10 doub 530 n n C3 C4 U10 doub 531 n n C3 O3 U10 sing 532 n n C4 C5 U10 sing 533 n n C4 O4 U10 sing 534 n n C5 C6 U10 sing 535 n n C5 O5 U10 doub 536 n n C6 C7 U10 sing 537 n n C1M H1M1 U10 sing 538 n n C1M H1M2 U10 sing 539 n n C1M H1M3 U10 sing 540 n n C3M O3 U10 sing 541 n n C3M H3M1 U10 sing 542 n n C3M H3M2 U10 sing 543 n n C3M H3M3 U10 sing 544 n n C4M O4 U10 sing 545 n n C4M H4M1 U10 sing 546 n n C4M H4M2 U10 sing 547 n n C4M H4M3 U10 sing 548 n n C7 C8 U10 sing 549 n n C7 H71 U10 sing 550 n n C7 H72 U10 sing 551 n n C8 C9 U10 doub 552 e n C8 H8 U10 sing 553 n n C9 C10 U10 sing 554 n n C9 C11 U10 sing 555 n n C10 H101 U10 sing 556 n n C10 H102 U10 sing 557 n n C10 H103 U10 sing 558 n n C11 C12 U10 sing 559 n n C11 H111 U10 sing 560 n n C11 H112 U10 sing 561 n n C12 C13 U10 sing 562 n n C12 H121 U10 sing 563 n n C12 H122 U10 sing 564 n n C13 C14 U10 doub 565 e n C13 H13 U10 sing 566 n n C14 C15 U10 sing 567 n n C14 C16 U10 sing 568 n n C15 H151 U10 sing 569 n n C15 H152 U10 sing 570 n n C15 H153 U10 sing 571 n n C16 C17 U10 sing 572 n n C16 H161 U10 sing 573 n n C16 H162 U10 sing 574 n n C17 C18 U10 sing 575 n n C17 H171 U10 sing 576 n n C17 H172 U10 sing 577 n n C18 C19 U10 doub 578 e n C18 H18 U10 sing 579 n n C19 C20 U10 sing 580 n n C19 C21 U10 sing 581 n n C20 H201 U10 sing 582 n n C20 H202 U10 sing 583 n n C20 H203 U10 sing 584 n n C21 C22 U10 sing 585 n n C21 H211 U10 sing 586 n n C21 H212 U10 sing 587 n n C22 C23 U10 sing 588 n n C22 H221 U10 sing 589 n n C22 H222 U10 sing 590 n n C23 C24 U10 doub 591 e n C23 H23 U10 sing 592 n n C24 C25 U10 sing 593 n n C24 C26 U10 sing 594 n n C25 H251 U10 sing 595 n n C25 H252 U10 sing 596 n n C25 H253 U10 sing 597 n n C26 C27 U10 sing 598 n n C26 H261 U10 sing 599 n n C26 H262 U10 sing 600 n n C27 C28 U10 sing 601 n n C27 H271 U10 sing 602 n n C27 H272 U10 sing 603 n n C28 C29 U10 doub 604 e n C28 H28 U10 sing 605 n n C29 C30 U10 sing 606 n n C29 C31 U10 sing 607 n n C30 H301 U10 sing 608 n n C30 H302 U10 sing 609 n n C30 H303 U10 sing 610 n n C31 C32 U10 sing 611 n n C31 H311 U10 sing 612 n n C31 H312 U10 sing 613 n n C32 C33 U10 sing 614 n n C32 H321 U10 sing 615 n n C32 H322 U10 sing 616 n n C33 C34 U10 doub 617 e n C33 H33 U10 sing 618 n n C34 C35 U10 sing 619 n n C34 C36 U10 sing 620 n n C35 H351 U10 sing 621 n n C35 H352 U10 sing 622 n n C35 H353 U10 sing 623 n n C36 C37 U10 sing 624 n n C36 H361 U10 sing 625 n n C36 H362 U10 sing 626 n n C37 C38 U10 sing 627 n n C37 H371 U10 sing 628 n n C37 H372 U10 sing 629 n n C38 C39 U10 doub 630 e n C38 H38 U10 sing 631 n n C39 C40 U10 sing 632 n n C39 C41 U10 sing 633 n n C40 H401 U10 sing 634 n n C40 H402 U10 sing 635 n n C40 H403 U10 sing 636 n n C41 C42 U10 sing 637 n n C41 H411 U10 sing 638 n n C41 H412 U10 sing 639 n n C42 C43 U10 sing 640 n n C42 H421 U10 sing 641 n n C42 H422 U10 sing 642 n n C43 C44 U10 doub 643 e n C43 H43 U10 sing 644 n n C44 C45 U10 sing 645 n n C44 C46 U10 sing 646 n n C45 H451 U10 sing 647 n n C45 H452 U10 sing 648 n n C45 H453 U10 sing 649 n n C46 C47 U10 sing 650 n n C46 H461 U10 sing 651 n n C46 H462 U10 sing 652 n n C47 C48 U10 sing 653 n n C47 H471 U10 sing 654 n n C47 H472 U10 sing 655 n n C48 C49 U10 doub 656 e n C48 H48 U10 sing 657 n n C49 C50 U10 sing 658 n n C49 C51 U10 sing 659 n n C50 H501 U10 sing 660 n n C50 H502 U10 sing 661 n n C50 H503 U10 sing 662 n n C51 C52 U10 sing 663 n n C51 H511 U10 sing 664 n n C51 H512 U10 sing 665 n n C52 C53 U10 sing 666 n n C52 H521 U10 sing 667 n n C52 H522 U10 sing 668 n n C53 C54 U10 doub 669 n n C53 H53 U10 sing 670 n n C54 C55 U10 sing 671 n n C54 C56 U10 sing 672 n n C55 H551 U10 sing 673 n n C55 H552 U10 sing 674 n n C55 H553 U10 sing 675 n n C56 H561 U10 sing 676 n n C56 H562 U10 sing 677 n n C56 H563 U10 sing 678 n n # _atom_sites.entry_id 7RJB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 10 HEM K 1 401 401 HEM HEM . L 10 HEM K 1 402 402 HEM HEM . M 11 U10 K 1 403 408 U10 U10 . N 11 U10 K 1 404 409 U10 U10 . O 12 HEC D 1 301 503 HEC HEC . P 13 FES E 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . N 11 145.684 135.567 140.301 1 79.65 ? C1 U10 404 K 1 HETATM 2 C C2 U10 . . . N 11 144.937 135.181 141.408 1 79.65 ? C2 U10 404 K 1 HETATM 3 C C3 U10 . . . N 11 144.403 133.899 141.496 1 79.65 ? C3 U10 404 K 1 HETATM 4 C C4 U10 . . . N 11 144.666 132.985 140.478 1 79.65 ? C4 U10 404 K 1 HETATM 5 C C5 U10 . . . N 11 145.411 133.374 139.373 1 79.65 ? C5 U10 404 K 1 HETATM 6 C C6 U10 . . . N 11 145.943 134.655 139.281 1 79.65 ? C6 U10 404 K 1 HETATM 7 C C1M U10 . . . N 11 146.223 136.967 140.251 1 79.65 ? C1M U10 404 K 1 HETATM 8 C C3M U10 . . . N 11 143.344 133.729 143.53 1 79.65 ? C3M U10 404 K 1 HETATM 9 C C4M U10 . . . N 11 144.068 130.984 141.457 1 79.65 ? C4M U10 404 K 1 HETATM 10 C C7 U10 . . . N 11 147.099 134.866 138.326 1 79.65 ? C7 U10 404 K 1 HETATM 11 C C8 U10 . . . N 11 146.584 135.51 137.06 1 79.65 ? C8 U10 404 K 1 HETATM 12 C C9 U10 . . . N 11 147.405 135.561 135.841 1 79.65 ? C9 U10 404 K 1 HETATM 13 C C10 U10 . . . N 11 148.854 135.17 135.89 1 79.65 ? C10 U10 404 K 1 HETATM 14 C C11 U10 . . . N 11 146.722 135.951 134.548 1 79.65 ? C11 U10 404 K 1 HETATM 15 C C12 U10 . . . N 11 147.499 136.941 133.687 1 79.65 ? C12 U10 404 K 1 HETATM 16 C C13 U10 . . . N 11 147.605 138.291 134.347 1 79.65 ? C13 U10 404 K 1 HETATM 17 C C14 U10 . . . N 11 147.996 139.463 133.542 1 79.65 ? C14 U10 404 K 1 HETATM 18 C C15 U10 . . . N 11 148.129 139.358 132.051 1 79.65 ? C15 U10 404 K 1 HETATM 19 C C16 U10 . . . N 11 148.259 140.789 134.216 1 79.65 ? C16 U10 404 K 1 HETATM 20 O O2 U10 . . . N 11 144.943 135.897 142.407 1 79.65 ? O2 U10 404 K 1 HETATM 21 O O3 U10 . . . N 11 143.35 133.769 142.121 1 79.65 ? O3 U10 404 K 1 HETATM 22 O O4 U10 . . . N 11 144.028 131.933 140.413 1 79.65 ? O4 U10 404 K 1 HETATM 23 O O5 U10 . . . N 11 145.632 132.557 138.482 1 79.65 ? O5 U10 404 K 1 HETATM 24 H H1M1 U10 . . . N 11 147.1 137.047 140.892 1 79.65 ? H1M1 U10 404 K 1 HETATM 25 H H1M2 U10 . . . N 11 145.459 137.65 140.624 1 79.65 ? H1M2 U10 404 K 1 HETATM 26 H H1M3 U10 . . . N 11 146.476 137.243 139.227 1 79.65 ? H1M3 U10 404 K 1 HETATM 27 H H4M1 U10 . . . N 11 144.807 131.283 142.2 1 79.65 ? H4M1 U10 404 K 1 HETATM 28 H H4M2 U10 . . . N 11 144.34 130.009 141.05 1 79.65 ? H4M2 U10 404 K 1 HETATM 29 H H4M3 U10 . . . N 11 143.087 130.917 141.927 1 79.65 ? H4M3 U10 404 K 1 HETATM 30 H H71 U10 . . . N 11 147.564 133.909 138.089 1 79.65 ? H71 U10 404 K 1 HETATM 31 H H72 U10 . . . N 11 147.856 135.5 138.785 1 79.65 ? H72 U10 404 K 1 HETATM 32 H H8 U10 . . . N 11 145.732 136.184 137.136 1 79.65 ? H8 U10 404 K 1 HETATM 33 H H101 U10 . . . N 11 148.942 134.094 135.74 1 79.65 ? H101 U10 404 K 1 HETATM 34 H H102 U10 . . . N 11 149.255 135.416 136.872 1 79.65 ? H102 U10 404 K 1 HETATM 35 H H103 U10 . . . N 11 149.427 135.703 135.133 1 79.65 ? H103 U10 404 K 1 HETATM 36 H H111 U10 . . . N 11 145.749 136.383 134.786 1 79.65 ? H111 U10 404 K 1 HETATM 37 H H112 U10 . . . N 11 146.539 135.049 133.966 1 79.65 ? H112 U10 404 K 1 HETATM 38 H H121 U10 . . . N 11 146.983 137.063 132.737 1 79.65 ? H121 U10 404 K 1 HETATM 39 H H122 U10 . . . N 11 148.493 136.555 133.469 1 79.65 ? H122 U10 404 K 1 HETATM 40 H H13 U10 . . . N 11 147.601 138.361 135.434 1 79.65 ? H13 U10 404 K 1 HETATM 41 H H151 U10 . . . N 11 148.693 140.212 131.676 1 79.65 ? H151 U10 404 K 1 HETATM 42 H H152 U10 . . . N 11 147.138 139.345 131.597 1 79.65 ? H152 U10 404 K 1 HETATM 43 H H153 U10 . . . N 11 148.659 138.441 131.794 1 79.65 ? H153 U10 404 K 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #