data_7RJD # _model_server_result.job_id kPSjYi6M8fkL1tx0flkMIw _model_server_result.datetime_utc '2024-11-21 14:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":301}' # _entry.id 7RJD # _exptl.entry_id 7RJD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 89 H CYS 89 1_555 G SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C NE2 GLN 22 K GLN 22 1_555 O C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 C OE1 GLN 43 K GLN 43 1_555 L C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 D SG CYS 82 D CYS 82 1_555 P CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? covale ? covale4 D SG CYS 85 D CYS 85 1_555 P CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? covale ? covale5 D SG CYS 85 D CYS 85 1_555 P CBC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc1 C NE2 HIS 82 K HIS 82 1_555 L FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 C NE2 HIS 96 K HIS 96 1_555 M FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 C NE2 HIS 183 K HIS 183 1_555 L FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 C NE2 HIS 197 K HIS 197 1_555 M FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 D NE2 HIS 86 D HIS 86 1_555 P FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7RJD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 10 FES E 1 301 4 FES FES . L 11 HEM K 1 401 401 HEM HEM . M 11 HEM K 1 402 402 HEM HEM . N 12 U10 K 1 403 408 U10 U10 . O 12 U10 K 1 404 409 U10 U10 . P 13 HEC D 1 301 503 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . P 13 137.98 123.579 86.56 1 90.62 ? FE HEC 301 D 1 HETATM 2 C CHA HEC . . . P 13 135.623 125.361 88.306 1 90.62 ? CHA HEC 301 D 1 HETATM 3 C CHB HEC . . . P 13 139.406 122.64 89.551 1 90.62 ? CHB HEC 301 D 1 HETATM 4 C CHC HEC . . . P 13 140.18 121.649 84.879 1 90.62 ? CHC HEC 301 D 1 HETATM 5 C CHD HEC . . . P 13 136.824 124.911 83.642 1 90.62 ? CHD HEC 301 D 1 HETATM 6 N NA HEC . . . P 13 137.632 123.982 88.549 1 90.62 ? NA HEC 301 D 1 HETATM 7 C C1A HEC . . . P 13 136.524 124.635 89.038 1 90.62 ? C1A HEC 301 D 1 HETATM 8 C C2A HEC . . . P 13 136.459 124.429 90.465 1 90.62 ? C2A HEC 301 D 1 HETATM 9 C C3A HEC . . . P 13 137.504 123.688 90.818 1 90.62 ? C3A HEC 301 D 1 HETATM 10 C C4A HEC . . . P 13 138.257 123.386 89.623 1 90.62 ? C4A HEC 301 D 1 HETATM 11 C CMA HEC . . . P 13 137.848 123.215 92.241 1 90.62 ? CMA HEC 301 D 1 HETATM 12 C CAA HEC . . . P 13 135.373 125.016 91.391 1 90.62 ? CAA HEC 301 D 1 HETATM 13 C CBA HEC . . . P 13 134.599 123.923 92.111 1 90.62 ? CBA HEC 301 D 1 HETATM 14 C CGA HEC . . . P 13 133.633 124.579 93.057 1 90.62 ? CGA HEC 301 D 1 HETATM 15 O O1A HEC . . . P 13 133.654 125.83 93.159 1 90.62 ? O1A HEC 301 D 1 HETATM 16 O O2A HEC . . . P 13 132.844 123.855 93.711 1 90.62 ? O2A HEC 301 D 1 HETATM 17 N NB HEC . . . P 13 139.539 122.41 87.107 1 90.62 ? NB HEC 301 D 1 HETATM 18 C C1B HEC . . . P 13 139.9 122.086 88.397 1 90.62 ? C1B HEC 301 D 1 HETATM 19 C C2B HEC . . . P 13 140.888 121.041 88.337 1 90.62 ? C2B HEC 301 D 1 HETATM 20 C C3B HEC . . . P 13 141.12 120.754 87.059 1 90.62 ? C3B HEC 301 D 1 HETATM 21 C C4B HEC . . . P 13 140.27 121.612 86.251 1 90.62 ? C4B HEC 301 D 1 HETATM 22 C CMB HEC . . . P 13 141.553 120.397 89.567 1 90.62 ? CMB HEC 301 D 1 HETATM 23 C CAB HEC . . . P 13 142.115 119.674 86.578 1 90.62 ? CAB HEC 301 D 1 HETATM 24 C CBB HEC . . . P 13 142.472 119.577 85.298 1 90.62 ? CBB HEC 301 D 1 HETATM 25 N NC HEC . . . P 13 138.377 123.295 84.618 1 90.62 ? NC HEC 301 D 1 HETATM 26 C C1C HEC . . . P 13 139.413 122.52 84.145 1 90.62 ? C1C HEC 301 D 1 HETATM 27 C C2C HEC . . . P 13 139.548 122.779 82.732 1 90.62 ? C2C HEC 301 D 1 HETATM 28 C C3C HEC . . . P 13 138.637 123.681 82.377 1 90.62 ? C3C HEC 301 D 1 HETATM 29 C C4C HEC . . . P 13 137.872 124.023 83.559 1 90.62 ? C4C HEC 301 D 1 HETATM 30 C CMC HEC . . . P 13 140.591 122.122 81.807 1 90.62 ? CMC HEC 301 D 1 HETATM 31 C CAC HEC . . . P 13 138.453 124.223 80.942 1 90.62 ? CAC HEC 301 D 1 HETATM 32 C CBC HEC . . . P 13 137.683 125.284 80.684 1 90.62 ? CBC HEC 301 D 1 HETATM 33 N ND HEC . . . P 13 136.545 124.944 86.084 1 90.62 ? ND HEC 301 D 1 HETATM 34 C C1D HEC . . . P 13 136.151 125.237 84.797 1 90.62 ? C1D HEC 301 D 1 HETATM 35 C C2D HEC . . . P 13 134.898 125.95 84.862 1 90.62 ? C2D HEC 301 D 1 HETATM 36 C C3D HEC . . . P 13 134.549 126.075 86.141 1 90.62 ? C3D HEC 301 D 1 HETATM 37 C C4D HEC . . . P 13 135.585 125.447 86.937 1 90.62 ? C4D HEC 301 D 1 HETATM 38 C CMD HEC . . . P 13 134.105 126.46 83.643 1 90.62 ? CMD HEC 301 D 1 HETATM 39 C CAD HEC . . . P 13 133.266 126.782 86.639 1 90.62 ? CAD HEC 301 D 1 HETATM 40 C CBD HEC . . . P 13 132.793 126.233 87.982 1 90.62 ? CBD HEC 301 D 1 HETATM 41 C CGD HEC . . . P 13 131.334 126.518 88.173 1 90.62 ? CGD HEC 301 D 1 HETATM 42 O O1D HEC . . . P 13 130.94 126.837 89.32 1 90.62 ? O1D HEC 301 D 1 HETATM 43 O O2D HEC . . . P 13 130.564 126.431 87.186 1 90.62 ? O2D HEC 301 D 1 HETATM 44 H HHA HEC . . . P 13 135.193 126.095 88.789 1 90.62 ? HHA HEC 301 D 1 HETATM 45 H HHB HEC . . . P 13 139.998 122.654 90.332 1 90.62 ? HHB HEC 301 D 1 HETATM 46 H HHC HEC . . . P 13 140.534 120.875 84.395 1 90.62 ? HHC HEC 301 D 1 HETATM 47 H HHD HEC . . . P 13 136.345 125.091 82.807 1 90.62 ? HHD HEC 301 D 1 HETATM 48 H HMA1 HEC . . . P 13 137.572 123.899 92.884 1 90.62 ? HMA1 HEC 301 D 1 HETATM 49 H HMA2 HEC . . . P 13 138.814 123.063 92.313 1 90.62 ? HMA2 HEC 301 D 1 HETATM 50 H HMA3 HEC . . . P 13 137.366 122.383 92.433 1 90.62 ? HMA3 HEC 301 D 1 HETATM 51 H HAA1 HEC . . . P 13 134.755 125.547 90.865 1 90.62 ? HAA1 HEC 301 D 1 HETATM 52 H HAA2 HEC . . . P 13 135.798 125.587 92.049 1 90.62 ? HAA2 HEC 301 D 1 HETATM 53 H HBA1 HEC . . . P 13 135.208 123.358 92.61 1 90.62 ? HBA1 HEC 301 D 1 HETATM 54 H HBA2 HEC . . . P 13 134.111 123.388 91.465 1 90.62 ? HBA2 HEC 301 D 1 HETATM 55 H HMB1 HEC . . . P 13 142.027 119.596 89.301 1 90.62 ? HMB1 HEC 301 D 1 HETATM 56 H HMB2 HEC . . . P 13 140.873 120.171 90.221 1 90.62 ? HMB2 HEC 301 D 1 HETATM 57 H HMB3 HEC . . . P 13 142.176 121.027 89.963 1 90.62 ? HMB3 HEC 301 D 1 HETATM 58 H HAB HEC . . . P 13 142.478 119.051 87.212 1 90.62 ? HAB HEC 301 D 1 HETATM 59 H HBB1 HEC . . . P 13 142.536 118.704 84.883 1 90.62 ? HBB1 HEC 301 D 1 HETATM 60 H HBB2 HEC . . . P 13 142.495 120.372 84.744 1 90.62 ? HBB2 HEC 301 D 1 HETATM 61 H HMC1 HEC . . . P 13 141.47 122.212 82.207 1 90.62 ? HMC1 HEC 301 D 1 HETATM 62 H HMC2 HEC . . . P 13 140.586 122.556 80.94 1 90.62 ? HMC2 HEC 301 D 1 HETATM 63 H HMC3 HEC . . . P 13 140.384 121.18 81.701 1 90.62 ? HMC3 HEC 301 D 1 HETATM 64 H HAC HEC . . . P 13 138.81 123.72 80.206 1 90.62 ? HAC HEC 301 D 1 HETATM 65 H HBC1 HEC . . . P 13 137.238 125.358 79.825 1 90.62 ? HBC1 HEC 301 D 1 HETATM 66 H HBC2 HEC . . . P 13 137.538 125.961 81.361 1 90.62 ? HBC2 HEC 301 D 1 HETATM 67 H HMD1 HEC . . . P 13 134.691 127.01 83.082 1 90.62 ? HMD1 HEC 301 D 1 HETATM 68 H HMD2 HEC . . . P 13 133.344 126.999 83.94 1 90.62 ? HMD2 HEC 301 D 1 HETATM 69 H HMD3 HEC . . . P 13 133.782 125.696 83.121 1 90.62 ? HMD3 HEC 301 D 1 HETATM 70 H HAD1 HEC . . . P 13 132.565 126.657 85.983 1 90.62 ? HAD1 HEC 301 D 1 HETATM 71 H HAD2 HEC . . . P 13 133.445 127.73 86.733 1 90.62 ? HAD2 HEC 301 D 1 HETATM 72 H HBD1 HEC . . . P 13 133.288 126.66 88.697 1 90.62 ? HBD1 HEC 301 D 1 HETATM 73 H HBD2 HEC . . . P 13 132.941 125.275 88.011 1 90.62 ? HBD2 HEC 301 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 73 #