data_7RJD # _model_server_result.job_id 9go-k3rKETENcx8UO77iXw _model_server_result.datetime_utc '2024-11-21 13:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":402}' # _entry.id 7RJD # _exptl.entry_id 7RJD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 L N N ? 11 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 89 H CYS 89 1_555 G SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C NE2 GLN 22 K GLN 22 1_555 O C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 C OE1 GLN 43 K GLN 43 1_555 L C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 D SG CYS 82 D CYS 82 1_555 P CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? covale ? covale4 D SG CYS 85 D CYS 85 1_555 P CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? covale ? covale5 D SG CYS 85 D CYS 85 1_555 P CBC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc1 C NE2 HIS 82 K HIS 82 1_555 L FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 C NE2 HIS 96 K HIS 96 1_555 M FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 C NE2 HIS 183 K HIS 183 1_555 L FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 C NE2 HIS 197 K HIS 197 1_555 M FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 D NE2 HIS 86 D HIS 86 1_555 P FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 7RJD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 10 FES E 1 301 4 FES FES . L 11 HEM K 1 401 401 HEM HEM . M 11 HEM K 1 402 402 HEM HEM . N 12 U10 K 1 403 408 U10 U10 . O 12 U10 K 1 404 409 U10 U10 . P 13 HEC D 1 301 503 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . M 11 138.404 134.462 138.19 1 74.11 ? CHA HEM 402 K 1 HETATM 2 C CHB HEM . . . M 11 141.425 136.524 135.069 1 74.11 ? CHB HEM 402 K 1 HETATM 3 C CHC HEM . . . M 11 137.739 137.092 131.967 1 74.11 ? CHC HEM 402 K 1 HETATM 4 C CHD HEM . . . M 11 134.665 136.096 135.515 1 74.11 ? CHD HEM 402 K 1 HETATM 5 C C1A HEM . . . M 11 139.587 134.863 137.614 1 74.11 ? C1A HEM 402 K 1 HETATM 6 C C2A HEM . . . M 11 140.936 134.535 138.011 1 74.11 ? C2A HEM 402 K 1 HETATM 7 C C3A HEM . . . M 11 141.763 135.106 137.138 1 74.11 ? C3A HEM 402 K 1 HETATM 8 C C4A HEM . . . M 11 140.973 135.806 136.149 1 74.11 ? C4A HEM 402 K 1 HETATM 9 C CMA HEM . . . M 11 143.3 135.034 137.181 1 74.11 ? CMA HEM 402 K 1 HETATM 10 C CAA HEM . . . M 11 141.351 133.683 139.225 1 74.11 ? CAA HEM 402 K 1 HETATM 11 C CBA HEM . . . M 11 141.389 132.226 138.792 1 74.11 ? CBA HEM 402 K 1 HETATM 12 C CGA HEM . . . M 11 139.98 131.735 138.629 1 74.11 ? CGA HEM 402 K 1 HETATM 13 O O1A HEM . . . M 11 139.694 131.037 137.625 1 74.11 ? O1A HEM 402 K 1 HETATM 14 O O2A HEM . . . M 11 139.14 132.052 139.505 1 74.11 ? O2A HEM 402 K 1 HETATM 15 C C1B HEM . . . M 11 140.704 136.711 133.909 1 74.11 ? C1B HEM 402 K 1 HETATM 16 C C2B HEM . . . M 11 141.245 136.88 132.58 1 74.11 ? C2B HEM 402 K 1 HETATM 17 C C3B HEM . . . M 11 140.221 137.029 131.733 1 74.11 ? C3B HEM 402 K 1 HETATM 18 C C4B HEM . . . M 11 139.002 136.969 132.495 1 74.11 ? C4B HEM 402 K 1 HETATM 19 C CMB HEM . . . M 11 142.753 136.868 132.256 1 74.11 ? CMB HEM 402 K 1 HETATM 20 C CAB HEM . . . M 11 140.23 137.255 130.206 1 74.11 ? CAB HEM 402 K 1 HETATM 21 C CBB HEM . . . M 11 141.342 137.586 129.548 1 74.11 ? CBB HEM 402 K 1 HETATM 22 C C1C HEM . . . M 11 136.568 136.906 132.658 1 74.11 ? C1C HEM 402 K 1 HETATM 23 C C2C HEM . . . M 11 135.225 137.069 132.143 1 74.11 ? C2C HEM 402 K 1 HETATM 24 C C3C HEM . . . M 11 134.366 136.788 133.13 1 74.11 ? C3C HEM 402 K 1 HETATM 25 C C4C HEM . . . M 11 135.148 136.466 134.292 1 74.11 ? C4C HEM 402 K 1 HETATM 26 C CMC HEM . . . M 11 134.91 137.482 130.692 1 74.11 ? CMC HEM 402 K 1 HETATM 27 C CAC HEM . . . M 11 132.822 136.806 133.15 1 74.11 ? CAC HEM 402 K 1 HETATM 28 C CBC HEM . . . M 11 132.095 137.342 132.168 1 74.11 ? CBC HEM 402 K 1 HETATM 29 C C1D HEM . . . M 11 135.493 135.664 136.522 1 74.11 ? C1D HEM 402 K 1 HETATM 30 C C2D HEM . . . M 11 135.081 135.657 137.904 1 74.11 ? C2D HEM 402 K 1 HETATM 31 C C3D HEM . . . M 11 136.1 135.22 138.62 1 74.11 ? C3D HEM 402 K 1 HETATM 32 C C4D HEM . . . M 11 137.189 134.918 137.728 1 74.11 ? C4D HEM 402 K 1 HETATM 33 C CMD HEM . . . M 11 133.7 136.09 138.433 1 74.11 ? CMD HEM 402 K 1 HETATM 34 C CAD HEM . . . M 11 136.139 135.009 140.142 1 74.11 ? CAD HEM 402 K 1 HETATM 35 C CBD HEM . . . M 11 135.971 133.503 140.307 1 74.11 ? CBD HEM 402 K 1 HETATM 36 C CGD HEM . . . M 11 135.825 133.112 141.746 1 74.11 ? CGD HEM 402 K 1 HETATM 37 O O1D HEM . . . M 11 136.328 133.849 142.626 1 74.11 ? O1D HEM 402 K 1 HETATM 38 O O2D HEM . . . M 11 135.21 132.05 142.004 1 74.11 ? O2D HEM 402 K 1 HETATM 39 N NA HEM . . . M 11 139.649 135.632 136.47 1 74.11 ? NA HEM 402 K 1 HETATM 40 N NB HEM . . . M 11 139.329 136.773 133.819 1 74.11 ? NB HEM 402 K 1 HETATM 41 N NC HEM . . . M 11 136.485 136.533 133.975 1 74.11 ? NC HEM 402 K 1 HETATM 42 N ND HEM . . . M 11 136.797 135.166 136.407 1 74.11 ? ND HEM 402 K 1 HETATM 43 FE FE HEM . . . M 11 138.078 136.061 135.197 1 74.11 ? FE HEM 402 K 1 HETATM 44 H HHB HEM . . . M 11 142.198 137.109 135.213 1 74.11 ? HHB HEM 402 K 1 HETATM 45 H HHC HEM . . . M 11 137.668 137.49 131.076 1 74.11 ? HHC HEM 402 K 1 HETATM 46 H HHD HEM . . . M 11 133.797 136.464 135.78 1 74.11 ? HHD HEM 402 K 1 HETATM 47 H HMA HEM . . . M 11 143.672 135.497 136.401 1 74.11 ? HMA HEM 402 K 1 HETATM 48 H HMAA HEM . . . M 11 143.584 134.095 137.169 1 74.11 ? HMAA HEM 402 K 1 HETATM 49 H HMAB HEM . . . M 11 143.622 135.463 138.001 1 74.11 ? HMAB HEM 402 K 1 HETATM 50 H HAA HEM . . . M 11 140.704 133.782 139.937 1 74.11 ? HAA HEM 402 K 1 HETATM 51 H HAAA HEM . . . M 11 142.226 133.959 139.537 1 74.11 ? HAAA HEM 402 K 1 HETATM 52 H HBA HEM . . . M 11 141.84 131.697 139.467 1 74.11 ? HBA HEM 402 K 1 HETATM 53 H HBAA HEM . . . M 11 141.862 132.149 137.947 1 74.11 ? HBAA HEM 402 K 1 HETATM 54 H HMB HEM . . . M 11 142.9 136.469 131.385 1 74.11 ? HMB HEM 402 K 1 HETATM 55 H HMBA HEM . . . M 11 143.22 136.345 132.927 1 74.11 ? HMBA HEM 402 K 1 HETATM 56 H HMBB HEM . . . M 11 143.094 137.775 132.266 1 74.11 ? HMBB HEM 402 K 1 HETATM 57 H HAB HEM . . . M 11 139.408 137.169 129.718 1 74.11 ? HAB HEM 402 K 1 HETATM 58 H HBB HEM . . . M 11 141.384 137.468 128.592 1 74.11 ? HBB HEM 402 K 1 HETATM 59 H HBBA HEM . . . M 11 142.108 137.943 130.018 1 74.11 ? HBBA HEM 402 K 1 HETATM 60 H HMC HEM . . . M 11 134.081 137.072 130.402 1 74.11 ? HMC HEM 402 K 1 HETATM 61 H HMCA HEM . . . M 11 135.629 137.182 130.114 1 74.11 ? HMCA HEM 402 K 1 HETATM 62 H HMCB HEM . . . M 11 134.841 138.446 130.635 1 74.11 ? HMCB HEM 402 K 1 HETATM 63 H HAC HEM . . . M 11 132.367 136.408 133.895 1 74.11 ? HAC HEM 402 K 1 HETATM 64 H HBC HEM . . . M 11 131.149 137.135 132.105 1 74.11 ? HBC HEM 402 K 1 HETATM 65 H HBCA HEM . . . M 11 132.49 137.967 131.545 1 74.11 ? HBCA HEM 402 K 1 HETATM 66 H HMD HEM . . . M 11 133.648 135.935 139.398 1 74.11 ? HMD HEM 402 K 1 HETATM 67 H HMDA HEM . . . M 11 133.003 135.569 137.983 1 74.11 ? HMDA HEM 402 K 1 HETATM 68 H HMDB HEM . . . M 11 133.565 137.043 138.247 1 74.11 ? HMDB HEM 402 K 1 HETATM 69 H HAD HEM . . . M 11 135.414 135.483 140.576 1 74.11 ? HAD HEM 402 K 1 HETATM 70 H HADA HEM . . . M 11 136.994 135.296 140.501 1 74.11 ? HADA HEM 402 K 1 HETATM 71 H HBD HEM . . . M 11 136.75 133.057 139.938 1 74.11 ? HBD HEM 402 K 1 HETATM 72 H HBDA HEM . . . M 11 135.184 133.217 139.819 1 74.11 ? HBDA HEM 402 K 1 HETATM 73 H HHA HEM . . . M 11 138.442 134.188 139.13 1 74.11 ? HHA HEM 402 K 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 635 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 73 #