data_7RJD # _model_server_result.job_id JMu7gzGKgCURsCRyGhM8gQ _model_server_result.datetime_utc '2024-11-21 13:53:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":404}' # _entry.id 7RJD # _exptl.entry_id 7RJD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 N N N ? 12 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 G SG CYS 89 H CYS 89 1_555 G SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C NE2 GLN 22 K GLN 22 1_555 O C3M U10 . K U10 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 C OE1 GLN 43 K GLN 43 1_555 L C1B HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale3 D SG CYS 82 D CYS 82 1_555 P CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.714 ? covale ? covale4 D SG CYS 85 D CYS 85 1_555 P CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? covale ? covale5 D SG CYS 85 D CYS 85 1_555 P CBC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc1 C NE2 HIS 82 K HIS 82 1_555 L FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc2 C NE2 HIS 96 K HIS 96 1_555 M FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 C NE2 HIS 183 K HIS 183 1_555 L FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 C NE2 HIS 197 K HIS 197 1_555 M FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 D NE2 HIS 86 D HIS 86 1_555 P FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # _atom_sites.entry_id 7RJD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 10 FES E 1 301 4 FES FES . L 11 HEM K 1 401 401 HEM HEM . M 11 HEM K 1 402 402 HEM HEM . N 12 U10 K 1 403 408 U10 U10 . O 12 U10 K 1 404 409 U10 U10 . P 13 HEC D 1 301 503 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . O 12 145.684 135.567 140.301 1 79.65 ? C1 U10 404 K 1 HETATM 2 C C2 U10 . . . O 12 144.937 135.181 141.408 1 79.65 ? C2 U10 404 K 1 HETATM 3 C C3 U10 . . . O 12 144.403 133.899 141.496 1 79.65 ? C3 U10 404 K 1 HETATM 4 C C4 U10 . . . O 12 144.666 132.985 140.478 1 79.65 ? C4 U10 404 K 1 HETATM 5 C C5 U10 . . . O 12 145.411 133.374 139.373 1 79.65 ? C5 U10 404 K 1 HETATM 6 C C6 U10 . . . O 12 145.943 134.655 139.281 1 79.65 ? C6 U10 404 K 1 HETATM 7 C C1M U10 . . . O 12 146.223 136.967 140.251 1 79.65 ? C1M U10 404 K 1 HETATM 8 C C3M U10 . . . O 12 143.344 133.729 143.53 1 79.65 ? C3M U10 404 K 1 HETATM 9 C C4M U10 . . . O 12 144.068 130.984 141.457 1 79.65 ? C4M U10 404 K 1 HETATM 10 C C7 U10 . . . O 12 147.099 134.866 138.326 1 79.65 ? C7 U10 404 K 1 HETATM 11 C C8 U10 . . . O 12 146.584 135.51 137.06 1 79.65 ? C8 U10 404 K 1 HETATM 12 C C9 U10 . . . O 12 147.405 135.561 135.841 1 79.65 ? C9 U10 404 K 1 HETATM 13 C C10 U10 . . . O 12 148.854 135.17 135.89 1 79.65 ? C10 U10 404 K 1 HETATM 14 C C11 U10 . . . O 12 146.722 135.951 134.548 1 79.65 ? C11 U10 404 K 1 HETATM 15 C C12 U10 . . . O 12 147.499 136.941 133.687 1 79.65 ? C12 U10 404 K 1 HETATM 16 C C13 U10 . . . O 12 147.605 138.291 134.347 1 79.65 ? C13 U10 404 K 1 HETATM 17 C C14 U10 . . . O 12 147.996 139.463 133.542 1 79.65 ? C14 U10 404 K 1 HETATM 18 C C15 U10 . . . O 12 148.129 139.358 132.051 1 79.65 ? C15 U10 404 K 1 HETATM 19 C C16 U10 . . . O 12 148.259 140.789 134.216 1 79.65 ? C16 U10 404 K 1 HETATM 20 O O2 U10 . . . O 12 144.943 135.897 142.407 1 79.65 ? O2 U10 404 K 1 HETATM 21 O O3 U10 . . . O 12 143.35 133.769 142.121 1 79.65 ? O3 U10 404 K 1 HETATM 22 O O4 U10 . . . O 12 144.028 131.933 140.413 1 79.65 ? O4 U10 404 K 1 HETATM 23 O O5 U10 . . . O 12 145.632 132.557 138.482 1 79.65 ? O5 U10 404 K 1 HETATM 24 H H1M1 U10 . . . O 12 147.1 137.047 140.892 1 79.65 ? H1M1 U10 404 K 1 HETATM 25 H H1M2 U10 . . . O 12 145.459 137.65 140.624 1 79.65 ? H1M2 U10 404 K 1 HETATM 26 H H1M3 U10 . . . O 12 146.476 137.243 139.227 1 79.65 ? H1M3 U10 404 K 1 HETATM 27 H H4M1 U10 . . . O 12 144.807 131.283 142.2 1 79.65 ? H4M1 U10 404 K 1 HETATM 28 H H4M2 U10 . . . O 12 144.34 130.009 141.05 1 79.65 ? H4M2 U10 404 K 1 HETATM 29 H H4M3 U10 . . . O 12 143.087 130.917 141.927 1 79.65 ? H4M3 U10 404 K 1 HETATM 30 H H71 U10 . . . O 12 147.564 133.909 138.089 1 79.65 ? H71 U10 404 K 1 HETATM 31 H H72 U10 . . . O 12 147.856 135.5 138.785 1 79.65 ? H72 U10 404 K 1 HETATM 32 H H8 U10 . . . O 12 145.732 136.184 137.136 1 79.65 ? H8 U10 404 K 1 HETATM 33 H H101 U10 . . . O 12 148.942 134.094 135.74 1 79.65 ? H101 U10 404 K 1 HETATM 34 H H102 U10 . . . O 12 149.255 135.416 136.872 1 79.65 ? H102 U10 404 K 1 HETATM 35 H H103 U10 . . . O 12 149.427 135.703 135.133 1 79.65 ? H103 U10 404 K 1 HETATM 36 H H111 U10 . . . O 12 145.749 136.383 134.786 1 79.65 ? H111 U10 404 K 1 HETATM 37 H H112 U10 . . . O 12 146.539 135.049 133.966 1 79.65 ? H112 U10 404 K 1 HETATM 38 H H121 U10 . . . O 12 146.983 137.063 132.737 1 79.65 ? H121 U10 404 K 1 HETATM 39 H H122 U10 . . . O 12 148.493 136.555 133.469 1 79.65 ? H122 U10 404 K 1 HETATM 40 H H13 U10 . . . O 12 147.601 138.361 135.434 1 79.65 ? H13 U10 404 K 1 HETATM 41 H H151 U10 . . . O 12 148.693 140.212 131.676 1 79.65 ? H151 U10 404 K 1 HETATM 42 H H152 U10 . . . O 12 147.138 139.345 131.597 1 79.65 ? H152 U10 404 K 1 HETATM 43 H H153 U10 . . . O 12 148.659 138.441 131.794 1 79.65 ? H153 U10 404 K 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #