data_7RJE # _model_server_result.job_id fhqN4HTg-CO7PBcDG9rlMg _model_server_result.datetime_utc '2025-07-07 22:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":301}' # _entry.id 7RJE # _exptl.entry_id 7RJE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 Y N N ? 12 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E SG CYS 82 D CYS 82 1_555 Y CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 E SG CYS 85 D CYS 85 1_555 Y CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? covale ? covale3 L SG CYS 82 N CYS 82 1_555 Z CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 L SG CYS 85 N CYS 85 1_555 Z CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc1 A NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 A NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 A NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 A NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 B NE2 HIS 82 T HIS 82 1_555 V FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 B NE2 HIS 96 T HIS 96 1_555 W FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 B NE2 HIS 183 T HIS 183 1_555 V FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc8 B NE2 HIS 197 T HIS 197 1_555 W FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 E NE2 HIS 86 D HIS 86 1_555 Y FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc10 L NE2 HIS 86 N HIS 86 1_555 Z FE HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc11 Q O HIS 158 C HIS 158 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc12 R O HIS 158 M HIS 158 1_555 BA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc13 R O HIS 158 M HIS 158 1_555 BA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 133 n n FE NB HEC sing 134 n n FE NC HEC sing 135 n n FE ND HEC sing 136 n n CHA C1A HEC doub 137 n n CHA C4D HEC sing 138 n n CHA HHA HEC sing 139 n n CHB C4A HEC doub 140 n n CHB C1B HEC sing 141 n n CHB HHB HEC sing 142 n n CHC C4B HEC doub 143 n n CHC C1C HEC sing 144 n n CHC HHC HEC sing 145 n n CHD C4C HEC doub 146 n n CHD C1D HEC sing 147 n n CHD HHD HEC sing 148 n n NA C1A HEC sing 149 n y NA C4A HEC sing 150 n y C1A C2A HEC sing 151 n y C2A C3A HEC doub 152 n y C2A CAA HEC sing 153 n n C3A C4A HEC sing 154 n y C3A CMA HEC sing 155 n n CMA HMA1 HEC sing 156 n n CMA HMA2 HEC sing 157 n n CMA HMA3 HEC sing 158 n n CAA CBA HEC sing 159 n n CAA HAA1 HEC sing 160 n n CAA HAA2 HEC sing 161 n n CBA CGA HEC sing 162 n n CBA HBA1 HEC sing 163 n n CBA HBA2 HEC sing 164 n n CGA O1A HEC doub 165 n n CGA O2A HEC sing 166 n n O2A H2A HEC sing 167 n n NB C1B HEC sing 168 n y NB C4B HEC sing 169 n y C1B C2B HEC doub 170 n y C2B C3B HEC sing 171 n y C2B CMB HEC sing 172 n n C3B C4B HEC sing 173 n y C3B CAB HEC doub 174 e n CMB HMB1 HEC sing 175 n n CMB HMB2 HEC sing 176 n n CMB HMB3 HEC sing 177 n n CAB CBB HEC sing 178 n n CAB HAB HEC sing 179 n n CBB HBB1 HEC sing 180 n n CBB HBB2 HEC sing 181 n n CBB HBB3 HEC sing 182 n n NC C1C HEC sing 183 n y NC C4C HEC sing 184 n y C1C C2C HEC doub 185 n y C2C C3C HEC sing 186 n y C2C CMC HEC sing 187 n n C3C C4C HEC sing 188 n y C3C CAC HEC doub 189 e n CMC HMC1 HEC sing 190 n n CMC HMC2 HEC sing 191 n n CMC HMC3 HEC sing 192 n n CAC CBC HEC sing 193 n n CAC HAC HEC sing 194 n n CBC HBC1 HEC sing 195 n n CBC HBC2 HEC sing 196 n n CBC HBC3 HEC sing 197 n n ND C1D HEC sing 198 n y ND C4D HEC sing 199 n y C1D C2D HEC doub 200 n y C2D C3D HEC sing 201 n y C2D CMD HEC sing 202 n n C3D C4D HEC doub 203 n y C3D CAD HEC sing 204 n n CMD HMD1 HEC sing 205 n n CMD HMD2 HEC sing 206 n n CMD HMD3 HEC sing 207 n n CAD CBD HEC sing 208 n n CAD HAD1 HEC sing 209 n n CAD HAD2 HEC sing 210 n n CBD CGD HEC sing 211 n n CBD HBD1 HEC sing 212 n n CBD HBD2 HEC sing 213 n n CGD O1D HEC doub 214 n n CGD O2D HEC sing 215 n n O2D H2D HEC sing 216 n n # _atom_sites.entry_id 7RJE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM K 1 401 401 HEM HEM . T 10 HEM K 1 402 402 HEM HEM . U 11 ZL5 K 1 403 1 ZL5 ZLE . V 10 HEM T 1 401 401 HEM HEM . W 10 HEM T 1 402 402 HEM HEM . X 11 ZL5 T 1 403 1 ZL5 ZLE . Y 12 HEC D 1 301 3 HEC HEC . Z 12 HEC N 1 301 3 HEC HEC . AA 13 FES C 1 301 4 FES FES . BA 13 FES M 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . Z 12 161.466 175.391 87.9 1 108.49 ? FE HEC 301 N 1 HETATM 2 C CHA HEC . . . Z 12 163.968 174.005 89.753 1 108.49 ? CHA HEC 301 N 1 HETATM 3 C CHB HEC . . . Z 12 160.207 176.877 90.712 1 108.49 ? CHB HEC 301 N 1 HETATM 4 C CHC HEC . . . Z 12 159.111 177.021 85.999 1 108.49 ? CHC HEC 301 N 1 HETATM 5 C CHD HEC . . . Z 12 162.511 173.662 85.152 1 108.49 ? CHD HEC 301 N 1 HETATM 6 N NA HEC . . . Z 12 162.051 175.518 89.846 1 108.49 ? NA HEC 301 N 1 HETATM 7 C C1A HEC . . . Z 12 162.994 174.697 90.427 1 108.49 ? C1A HEC 301 N 1 HETATM 8 C C2A HEC . . . Z 12 162.779 174.696 91.858 1 108.49 ? C2A HEC 301 N 1 HETATM 9 C C3A HEC . . . Z 12 161.741 175.491 92.113 1 108.49 ? C3A HEC 301 N 1 HETATM 10 C C4A HEC . . . Z 12 161.265 176.021 90.86 1 108.49 ? C4A HEC 301 N 1 HETATM 11 C CMA HEC . . . Z 12 161.13 175.81 93.489 1 108.49 ? CMA HEC 301 N 1 HETATM 12 C CAA HEC . . . Z 12 163.605 173.908 92.893 1 108.49 ? CAA HEC 301 N 1 HETATM 13 C CBA HEC . . . Z 12 164.633 174.828 93.535 1 108.49 ? CBA HEC 301 N 1 HETATM 14 C CGA HEC . . . Z 12 165.327 174.08 94.639 1 108.49 ? CGA HEC 301 N 1 HETATM 15 O O1A HEC . . . Z 12 166.253 174.656 95.264 1 108.49 ? O1A HEC 301 N 1 HETATM 16 O O2A HEC . . . Z 12 164.952 172.909 94.897 1 108.49 ? O2A HEC 301 N 1 HETATM 17 N NB HEC . . . Z 12 159.917 176.678 88.279 1 108.49 ? NB HEC 301 N 1 HETATM 18 C C1B HEC . . . Z 12 159.624 177.212 89.517 1 108.49 ? C1B HEC 301 N 1 HETATM 19 C C2B HEC . . . Z 12 158.592 178.203 89.351 1 108.49 ? C2B HEC 301 N 1 HETATM 20 C C3B HEC . . . Z 12 158.273 178.263 88.061 1 108.49 ? C3B HEC 301 N 1 HETATM 21 C C4B HEC . . . Z 12 159.105 177.3 87.349 1 108.49 ? C4B HEC 301 N 1 HETATM 22 C CMB HEC . . . Z 12 157.974 179.035 90.493 1 108.49 ? CMB HEC 301 N 1 HETATM 23 C CAB HEC . . . Z 12 157.197 179.215 87.499 1 108.49 ? CAB HEC 301 N 1 HETATM 24 C CBB HEC . . . Z 12 156.928 179.278 86.197 1 108.49 ? CBB HEC 301 N 1 HETATM 25 N NC HEC . . . Z 12 160.845 175.27 85.947 1 108.49 ? NC HEC 301 N 1 HETATM 26 C C1C HEC . . . Z 12 160.002 176.188 85.354 1 108.49 ? C1C HEC 301 N 1 HETATM 27 C C2C HEC . . . Z 12 160.211 176.124 83.924 1 108.49 ? C2C HEC 301 N 1 HETATM 28 C C3C HEC . . . Z 12 161.148 175.207 83.671 1 108.49 ? C3C HEC 301 N 1 HETATM 29 C C4C HEC . . . Z 12 161.568 174.647 84.946 1 108.49 ? C4C HEC 301 N 1 HETATM 30 C CMC HEC . . . Z 12 159.472 176.987 82.881 1 108.49 ? CMC HEC 301 N 1 HETATM 31 C CAC HEC . . . Z 12 161.657 174.839 82.256 1 108.49 ? CAC HEC 301 N 1 HETATM 32 C CBC HEC . . . Z 12 162.728 174.059 82.071 1 108.49 ? CBC HEC 301 N 1 HETATM 33 N ND HEC . . . Z 12 163.009 174.129 87.505 1 108.49 ? ND HEC 301 N 1 HETATM 34 C C1D HEC . . . Z 12 163.169 173.415 86.336 1 108.49 ? C1D HEC 301 N 1 HETATM 35 C C2D HEC . . . Z 12 164.148 172.374 86.58 1 108.49 ? C2D HEC 301 N 1 HETATM 36 C C3D HEC . . . Z 12 164.551 172.473 87.848 1 108.49 ? C3D HEC 301 N 1 HETATM 37 C C4D HEC . . . Z 12 163.842 173.575 88.455 1 108.49 ? C4D HEC 301 N 1 HETATM 38 C CMD HEC . . . Z 12 164.639 171.335 85.552 1 108.49 ? CMD HEC 301 N 1 HETATM 39 C CAD HEC . . . Z 12 165.583 171.574 88.563 1 108.49 ? CAD HEC 301 N 1 HETATM 40 C CBD HEC . . . Z 12 166.81 172.401 88.934 1 108.49 ? CBD HEC 301 N 1 HETATM 41 C CGD HEC . . . Z 12 167.74 171.577 89.781 1 108.49 ? CGD HEC 301 N 1 HETATM 42 O O1D HEC . . . Z 12 167.322 170.489 90.252 1 108.49 ? O1D HEC 301 N 1 HETATM 43 O O2D HEC . . . Z 12 168.899 172.015 89.99 1 108.49 ? O2D HEC 301 N 1 HETATM 44 H HHA HEC . . . Z 12 164.88 174.094 90.099 1 108.49 ? HHA HEC 301 N 1 HETATM 45 H HHB HEC . . . Z 12 159.957 177.413 91.493 1 108.49 ? HHB HEC 301 N 1 HETATM 46 H HHC HEC . . . Z 12 158.273 177.192 85.522 1 108.49 ? HHC HEC 301 N 1 HETATM 47 H HHD HEC . . . Z 12 162.581 172.97 84.461 1 108.49 ? HHD HEC 301 N 1 HETATM 48 H HMA1 HEC . . . Z 12 161.099 176.781 93.616 1 108.49 ? HMA1 HEC 301 N 1 HETATM 49 H HMA2 HEC . . . Z 12 161.677 175.404 94.194 1 108.49 ? HMA2 HEC 301 N 1 HETATM 50 H HMA3 HEC . . . Z 12 160.22 175.448 93.526 1 108.49 ? HMA3 HEC 301 N 1 HETATM 51 H HAA1 HEC . . . Z 12 164.059 173.174 92.452 1 108.49 ? HAA1 HEC 301 N 1 HETATM 52 H HAA2 HEC . . . Z 12 163.012 173.558 93.576 1 108.49 ? HAA2 HEC 301 N 1 HETATM 53 H HBA1 HEC . . . Z 12 164.189 175.61 93.899 1 108.49 ? HBA1 HEC 301 N 1 HETATM 54 H HBA2 HEC . . . Z 12 165.283 175.103 92.87 1 108.49 ? HBA2 HEC 301 N 1 HETATM 55 H HMB1 HEC . . . Z 12 157.53 179.817 90.132 1 108.49 ? HMB1 HEC 301 N 1 HETATM 56 H HMB2 HEC . . . Z 12 158.677 179.314 91.1 1 108.49 ? HMB2 HEC 301 N 1 HETATM 57 H HMB3 HEC . . . Z 12 157.335 178.49 90.978 1 108.49 ? HMB3 HEC 301 N 1 HETATM 58 H HAB HEC . . . Z 12 156.647 179.712 88.109 1 108.49 ? HAB HEC 301 N 1 HETATM 59 H HBB1 HEC . . . Z 12 156.004 179.276 85.916 1 108.49 ? HBB1 HEC 301 N 1 HETATM 60 H HBB2 HEC . . . Z 12 157.624 179.106 85.547 1 108.49 ? HBB2 HEC 301 N 1 HETATM 61 H HMC1 HEC . . . Z 12 159.882 176.878 82.009 1 108.49 ? HMC1 HEC 301 N 1 HETATM 62 H HMC2 HEC . . . Z 12 159.521 177.919 83.143 1 108.49 ? HMC2 HEC 301 N 1 HETATM 63 H HMC3 HEC . . . Z 12 158.542 176.714 82.838 1 108.49 ? HMC3 HEC 301 N 1 HETATM 64 H HAC HEC . . . Z 12 161.264 175.265 81.491 1 108.49 ? HAC HEC 301 N 1 HETATM 65 H HBC1 HEC . . . Z 12 162.877 173.645 81.207 1 108.49 ? HBC1 HEC 301 N 1 HETATM 66 H HBC2 HEC . . . Z 12 163.403 173.98 82.762 1 108.49 ? HBC2 HEC 301 N 1 HETATM 67 H HMD1 HEC . . . Z 12 165.59 171.156 85.701 1 108.49 ? HMD1 HEC 301 N 1 HETATM 68 H HMD2 HEC . . . Z 12 164.511 171.686 84.646 1 108.49 ? HMD2 HEC 301 N 1 HETATM 69 H HMD3 HEC . . . Z 12 164.129 170.505 85.654 1 108.49 ? HMD3 HEC 301 N 1 HETATM 70 H HAD1 HEC . . . Z 12 165.847 170.849 87.975 1 108.49 ? HAD1 HEC 301 N 1 HETATM 71 H HAD2 HEC . . . Z 12 165.185 171.208 89.368 1 108.49 ? HAD2 HEC 301 N 1 HETATM 72 H HBD1 HEC . . . Z 12 166.539 173.187 89.43 1 108.49 ? HBD1 HEC 301 N 1 HETATM 73 H HBD2 HEC . . . Z 12 167.272 172.674 88.127 1 108.49 ? HBD2 HEC 301 N 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 290 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 73 #