data_7RJE # _model_server_result.job_id QkZp6LeDm4wm1ni2lqMojA _model_server_result.datetime_utc '2025-07-05 13:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 7RJE # _exptl.entry_id 7RJE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 V N N ? 10 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E SG CYS 82 D CYS 82 1_555 Y CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 E SG CYS 85 D CYS 85 1_555 Y CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? covale ? covale3 L SG CYS 82 N CYS 82 1_555 Z CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 L SG CYS 85 N CYS 85 1_555 Z CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc1 A NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 A NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 A NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 A NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 B NE2 HIS 82 T HIS 82 1_555 V FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 B NE2 HIS 96 T HIS 96 1_555 W FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 B NE2 HIS 183 T HIS 183 1_555 V FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc8 B NE2 HIS 197 T HIS 197 1_555 W FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 E NE2 HIS 86 D HIS 86 1_555 Y FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc10 L NE2 HIS 86 N HIS 86 1_555 Z FE HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc11 Q O HIS 158 C HIS 158 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc12 R O HIS 158 M HIS 158 1_555 BA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc13 R O HIS 158 M HIS 158 1_555 BA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 217 n n CHA C4D HEM doub 218 n n CHA HHA HEM sing 219 n n CHB C4A HEM sing 220 n n CHB C1B HEM doub 221 n n CHB HHB HEM sing 222 n n CHC C4B HEM sing 223 n n CHC C1C HEM doub 224 n n CHC HHC HEM sing 225 n n CHD C4C HEM doub 226 n n CHD C1D HEM sing 227 n n CHD HHD HEM sing 228 n n C1A C2A HEM doub 229 n y C1A NA HEM sing 230 n y C2A C3A HEM sing 231 n y C2A CAA HEM sing 232 n n C3A C4A HEM doub 233 n y C3A CMA HEM sing 234 n n C4A NA HEM sing 235 n y CMA HMA HEM sing 236 n n CMA HMAA HEM sing 237 n n CMA HMAB HEM sing 238 n n CAA CBA HEM sing 239 n n CAA HAA HEM sing 240 n n CAA HAAA HEM sing 241 n n CBA CGA HEM sing 242 n n CBA HBA HEM sing 243 n n CBA HBAA HEM sing 244 n n CGA O1A HEM doub 245 n n CGA O2A HEM sing 246 n n C1B C2B HEM sing 247 n n C1B NB HEM sing 248 n n C2B C3B HEM doub 249 n n C2B CMB HEM sing 250 n n C3B C4B HEM sing 251 n n C3B CAB HEM sing 252 n n C4B NB HEM doub 253 n n CMB HMB HEM sing 254 n n CMB HMBA HEM sing 255 n n CMB HMBB HEM sing 256 n n CAB CBB HEM doub 257 n n CAB HAB HEM sing 258 n n CBB HBB HEM sing 259 n n CBB HBBA HEM sing 260 n n C1C C2C HEM sing 261 n y C1C NC HEM sing 262 n y C2C C3C HEM doub 263 n y C2C CMC HEM sing 264 n n C3C C4C HEM sing 265 n y C3C CAC HEM sing 266 n n C4C NC HEM sing 267 n y CMC HMC HEM sing 268 n n CMC HMCA HEM sing 269 n n CMC HMCB HEM sing 270 n n CAC CBC HEM doub 271 n n CAC HAC HEM sing 272 n n CBC HBC HEM sing 273 n n CBC HBCA HEM sing 274 n n C1D C2D HEM sing 275 n n C1D ND HEM doub 276 n n C2D C3D HEM doub 277 n n C2D CMD HEM sing 278 n n C3D C4D HEM sing 279 n n C3D CAD HEM sing 280 n n C4D ND HEM sing 281 n n CMD HMD HEM sing 282 n n CMD HMDA HEM sing 283 n n CMD HMDB HEM sing 284 n n CAD CBD HEM sing 285 n n CAD HAD HEM sing 286 n n CAD HADA HEM sing 287 n n CBD CGD HEM sing 288 n n CBD HBD HEM sing 289 n n CBD HBDA HEM sing 290 n n CGD O1D HEM doub 291 n n CGD O2D HEM sing 292 n n O2A H2A HEM sing 293 n n O2D H2D HEM sing 294 n n FE NA HEM sing 295 n n FE NB HEM sing 296 n n FE NC HEM sing 297 n n FE ND HEM sing 298 n n # _atom_sites.entry_id 7RJE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM K 1 401 401 HEM HEM . T 10 HEM K 1 402 402 HEM HEM . U 11 ZL5 K 1 403 1 ZL5 ZLE . V 10 HEM T 1 401 401 HEM HEM . W 10 HEM T 1 402 402 HEM HEM . X 11 ZL5 T 1 403 1 ZL5 ZLE . Y 12 HEC D 1 301 3 HEC HEC . Z 12 HEC N 1 301 3 HEC HEC . AA 13 FES C 1 301 4 FES FES . BA 13 FES M 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . S 10 142.956 138.856 112.504 1 93.61 ? CHA HEM 401 K 1 HETATM 2 C CHB HEM . . . S 10 141.011 138.273 116.918 1 93.61 ? CHB HEM 401 K 1 HETATM 3 C CHC HEM . . . S 10 144.391 141.148 118.815 1 93.61 ? CHC HEM 401 K 1 HETATM 4 C CHD HEM . . . S 10 145.982 142.14 114.355 1 93.61 ? CHD HEM 401 K 1 HETATM 5 C C1A HEM . . . S 10 142.15 138.431 113.536 1 93.61 ? C1A HEM 401 K 1 HETATM 6 C C2A HEM . . . S 10 141.041 137.511 113.426 1 93.61 ? C2A HEM 401 K 1 HETATM 7 C C3A HEM . . . S 10 140.509 137.352 114.639 1 93.61 ? C3A HEM 401 K 1 HETATM 8 C C4A HEM . . . S 10 141.256 138.167 115.567 1 93.61 ? C4A HEM 401 K 1 HETATM 9 C CMA HEM . . . S 10 139.305 136.455 114.999 1 93.61 ? CMA HEM 401 K 1 HETATM 10 C CAA HEM . . . S 10 140.561 136.819 112.134 1 93.61 ? CAA HEM 401 K 1 HETATM 11 C CBA HEM . . . S 10 141.697 136.002 111.539 1 93.61 ? CBA HEM 401 K 1 HETATM 12 C CGA HEM . . . S 10 141.136 135.019 110.549 1 93.61 ? CGA HEM 401 K 1 HETATM 13 O O1A HEM . . . S 10 141.889 134.117 110.107 1 93.61 ? O1A HEM 401 K 1 HETATM 14 O O2A HEM . . . S 10 139.933 135.135 110.205 1 93.61 ? O2A HEM 401 K 1 HETATM 15 C C1B HEM . . . S 10 141.776 138.967 117.827 1 93.61 ? C1B HEM 401 K 1 HETATM 16 C C2B HEM . . . S 10 141.61 138.971 119.267 1 93.61 ? C2B HEM 401 K 1 HETATM 17 C C3B HEM . . . S 10 142.553 139.765 119.787 1 93.61 ? C3B HEM 401 K 1 HETATM 18 C C4B HEM . . . S 10 143.333 140.288 118.692 1 93.61 ? C4B HEM 401 K 1 HETATM 19 C CMB HEM . . . S 10 140.527 138.176 120.026 1 93.61 ? CMB HEM 401 K 1 HETATM 20 C CAB HEM . . . S 10 142.831 140.131 121.262 1 93.61 ? CAB HEM 401 K 1 HETATM 21 C CBB HEM . . . S 10 141.986 139.82 122.248 1 93.61 ? CBB HEM 401 K 1 HETATM 22 C C1C HEM . . . S 10 145.142 141.618 117.772 1 93.61 ? C1C HEM 401 K 1 HETATM 23 C C2C HEM . . . S 10 146.372 142.357 117.905 1 93.61 ? C2C HEM 401 K 1 HETATM 24 C C3C HEM . . . S 10 146.8 142.642 116.671 1 93.61 ? C3C HEM 401 K 1 HETATM 25 C C4C HEM . . . S 10 145.875 142.069 115.724 1 93.61 ? C4C HEM 401 K 1 HETATM 26 C CMC HEM . . . S 10 147.007 142.747 119.259 1 93.61 ? CMC HEM 401 K 1 HETATM 27 C CAC HEM . . . S 10 148.072 143.399 116.254 1 93.61 ? CAC HEM 401 K 1 HETATM 28 C CBC HEM . . . S 10 149.014 143.696 117.147 1 93.61 ? CBC HEM 401 K 1 HETATM 29 C C1D HEM . . . S 10 145.348 141.307 113.467 1 93.61 ? C1D HEM 401 K 1 HETATM 30 C C2D HEM . . . S 10 145.652 141.171 112.061 1 93.61 ? C2D HEM 401 K 1 HETATM 31 C C3D HEM . . . S 10 144.815 140.267 111.546 1 93.61 ? C3D HEM 401 K 1 HETATM 32 C C4D HEM . . . S 10 143.955 139.795 112.613 1 93.61 ? C4D HEM 401 K 1 HETATM 33 C CMD HEM . . . S 10 146.753 141.949 111.313 1 93.61 ? CMD HEM 401 K 1 HETATM 34 C CAD HEM . . . S 10 144.761 139.781 110.083 1 93.61 ? CAD HEM 401 K 1 HETATM 35 C CBD HEM . . . S 10 146.146 139.319 109.641 1 93.61 ? CBD HEM 401 K 1 HETATM 36 C CGD HEM . . . S 10 146.075 137.985 108.945 1 93.61 ? CGD HEM 401 K 1 HETATM 37 O O1D HEM . . . S 10 146.979 137.703 108.119 1 93.61 ? O1D HEM 401 K 1 HETATM 38 O O2D HEM . . . S 10 145.126 137.2 109.204 1 93.61 ? O2D HEM 401 K 1 HETATM 39 N NA HEM . . . S 10 142.25 138.814 114.859 1 93.61 ? NA HEM 401 K 1 HETATM 40 N NB HEM . . . S 10 142.84 139.782 117.51 1 93.61 ? NB HEM 401 K 1 HETATM 41 N NC HEM . . . S 10 144.866 141.449 116.43 1 93.61 ? NC HEM 401 K 1 HETATM 42 N ND HEM . . . S 10 144.308 140.453 113.772 1 93.61 ? ND HEM 401 K 1 HETATM 43 FE FE HEM . . . S 10 143.68 139.977 115.659 1 93.61 ? FE HEM 401 K 1 HETATM 44 H HHB HEM . . . S 10 140.27 137.742 117.276 1 93.61 ? HHB HEM 401 K 1 HETATM 45 H HHC HEM . . . S 10 144.532 141.563 119.692 1 93.61 ? HHC HEM 401 K 1 HETATM 46 H HHD HEM . . . S 10 146.444 142.92 113.98 1 93.61 ? HHD HEM 401 K 1 HETATM 47 H HMA HEM . . . S 10 138.547 136.677 114.42 1 93.61 ? HMA HEM 401 K 1 HETATM 48 H HMAA HEM . . . S 10 139.053 136.602 115.934 1 93.61 ? HMAA HEM 401 K 1 HETATM 49 H HMAB HEM . . . S 10 139.549 135.515 114.869 1 93.61 ? HMAB HEM 401 K 1 HETATM 50 H HAA HEM . . . S 10 140.29 137.487 111.489 1 93.61 ? HAA HEM 401 K 1 HETATM 51 H HAAA HEM . . . S 10 139.816 136.234 112.337 1 93.61 ? HAAA HEM 401 K 1 HETATM 52 H HBA HEM . . . S 10 142.158 135.525 112.247 1 93.61 ? HBA HEM 401 K 1 HETATM 53 H HBAA HEM . . . S 10 142.315 136.595 111.085 1 93.61 ? HBAA HEM 401 K 1 HETATM 54 H HMB HEM . . . S 10 140.893 137.83 120.854 1 93.61 ? HMB HEM 401 K 1 HETATM 55 H HMBA HEM . . . S 10 140.227 137.436 119.475 1 93.61 ? HMBA HEM 401 K 1 HETATM 56 H HMBB HEM . . . S 10 139.774 138.757 120.216 1 93.61 ? HMBB HEM 401 K 1 HETATM 57 H HAB HEM . . . S 10 143.644 140.592 121.479 1 93.61 ? HAB HEM 401 K 1 HETATM 58 H HBB HEM . . . S 10 142.327 139.679 123.145 1 93.61 ? HBB HEM 401 K 1 HETATM 59 H HBBA HEM . . . S 10 141.038 139.721 122.07 1 93.61 ? HBBA HEM 401 K 1 HETATM 60 H HMC HEM . . . S 10 147.943 142.493 119.267 1 93.61 ? HMC HEM 401 K 1 HETATM 61 H HMCA HEM . . . S 10 146.546 142.29 119.979 1 93.61 ? HMCA HEM 401 K 1 HETATM 62 H HMCB HEM . . . S 10 146.929 143.706 119.387 1 93.61 ? HMCB HEM 401 K 1 HETATM 63 H HAC HEM . . . S 10 148.222 143.593 115.327 1 93.61 ? HAC HEM 401 K 1 HETATM 64 H HBC HEM . . . S 10 149.916 143.859 116.831 1 93.61 ? HBC HEM 401 K 1 HETATM 65 H HBCA HEM . . . S 10 148.755 144.062 118.004 1 93.61 ? HBCA HEM 401 K 1 HETATM 66 H HMD HEM . . . S 10 146.716 142.892 111.577 1 93.61 ? HMD HEM 401 K 1 HETATM 67 H HMDA HEM . . . S 10 146.614 141.876 110.346 1 93.61 ? HMDA HEM 401 K 1 HETATM 68 H HMDB HEM . . . S 10 147.63 141.581 111.55 1 93.61 ? HMDB HEM 401 K 1 HETATM 69 H HAD HEM . . . S 10 144.475 140.514 109.516 1 93.61 ? HAD HEM 401 K 1 HETATM 70 H HADA HEM . . . S 10 144.123 139.056 110.011 1 93.61 ? HADA HEM 401 K 1 HETATM 71 H HBD HEM . . . S 10 146.721 139.243 110.417 1 93.61 ? HBD HEM 401 K 1 HETATM 72 H HBDA HEM . . . S 10 146.52 139.974 109.031 1 93.61 ? HBDA HEM 401 K 1 HETATM 73 H HHA HEM . . . S 10 142.66 138.634 111.596 1 93.61 ? HHA HEM 401 K 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #