data_7RJE # _model_server_result.job_id 5VRtD7KZHQ8rdE1RYA3WxQ _model_server_result.datetime_utc '2025-07-04 18:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":401}' # _entry.id 7RJE # _exptl.entry_id 7RJE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 V N N ? 10 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E SG CYS 82 D CYS 82 1_555 Y CAB HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 E SG CYS 85 D CYS 85 1_555 Y CAC HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? covale ? covale3 L SG CYS 82 N CYS 82 1_555 Z CAB HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 L SG CYS 85 N CYS 85 1_555 Z CAC HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc1 A NE2 HIS 82 K HIS 82 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 A NE2 HIS 96 K HIS 96 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 A NE2 HIS 183 K HIS 183 1_555 S FE HEM . K HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 A NE2 HIS 197 K HIS 197 1_555 T FE HEM . K HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 B NE2 HIS 82 T HIS 82 1_555 V FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 B NE2 HIS 96 T HIS 96 1_555 W FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc7 B NE2 HIS 183 T HIS 183 1_555 V FE HEM . T HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc8 B NE2 HIS 197 T HIS 197 1_555 W FE HEM . T HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 E NE2 HIS 86 D HIS 86 1_555 Y FE HEC . D HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc10 L NE2 HIS 86 N HIS 86 1_555 Z FE HEC . N HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc11 Q O HIS 158 C HIS 158 1_555 AA FE2 FES . C FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc12 R O HIS 158 M HIS 158 1_555 BA FE1 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc13 R O HIS 158 M HIS 158 1_555 BA FE2 FES . M FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 217 n n CHA C4D HEM doub 218 n n CHA HHA HEM sing 219 n n CHB C4A HEM sing 220 n n CHB C1B HEM doub 221 n n CHB HHB HEM sing 222 n n CHC C4B HEM sing 223 n n CHC C1C HEM doub 224 n n CHC HHC HEM sing 225 n n CHD C4C HEM doub 226 n n CHD C1D HEM sing 227 n n CHD HHD HEM sing 228 n n C1A C2A HEM doub 229 n y C1A NA HEM sing 230 n y C2A C3A HEM sing 231 n y C2A CAA HEM sing 232 n n C3A C4A HEM doub 233 n y C3A CMA HEM sing 234 n n C4A NA HEM sing 235 n y CMA HMA HEM sing 236 n n CMA HMAA HEM sing 237 n n CMA HMAB HEM sing 238 n n CAA CBA HEM sing 239 n n CAA HAA HEM sing 240 n n CAA HAAA HEM sing 241 n n CBA CGA HEM sing 242 n n CBA HBA HEM sing 243 n n CBA HBAA HEM sing 244 n n CGA O1A HEM doub 245 n n CGA O2A HEM sing 246 n n C1B C2B HEM sing 247 n n C1B NB HEM sing 248 n n C2B C3B HEM doub 249 n n C2B CMB HEM sing 250 n n C3B C4B HEM sing 251 n n C3B CAB HEM sing 252 n n C4B NB HEM doub 253 n n CMB HMB HEM sing 254 n n CMB HMBA HEM sing 255 n n CMB HMBB HEM sing 256 n n CAB CBB HEM doub 257 n n CAB HAB HEM sing 258 n n CBB HBB HEM sing 259 n n CBB HBBA HEM sing 260 n n C1C C2C HEM sing 261 n y C1C NC HEM sing 262 n y C2C C3C HEM doub 263 n y C2C CMC HEM sing 264 n n C3C C4C HEM sing 265 n y C3C CAC HEM sing 266 n n C4C NC HEM sing 267 n y CMC HMC HEM sing 268 n n CMC HMCA HEM sing 269 n n CMC HMCB HEM sing 270 n n CAC CBC HEM doub 271 n n CAC HAC HEM sing 272 n n CBC HBC HEM sing 273 n n CBC HBCA HEM sing 274 n n C1D C2D HEM sing 275 n n C1D ND HEM doub 276 n n C2D C3D HEM doub 277 n n C2D CMD HEM sing 278 n n C3D C4D HEM sing 279 n n C3D CAD HEM sing 280 n n C4D ND HEM sing 281 n n CMD HMD HEM sing 282 n n CMD HMDA HEM sing 283 n n CMD HMDB HEM sing 284 n n CAD CBD HEM sing 285 n n CAD HAD HEM sing 286 n n CAD HADA HEM sing 287 n n CBD CGD HEM sing 288 n n CBD HBD HEM sing 289 n n CBD HBDA HEM sing 290 n n CGD O1D HEM doub 291 n n CGD O2D HEM sing 292 n n O2A H2A HEM sing 293 n n O2D H2D HEM sing 294 n n FE NA HEM sing 295 n n FE NB HEM sing 296 n n FE NC HEM sing 297 n n FE ND HEM sing 298 n n # _atom_sites.entry_id 7RJE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM K 1 401 401 HEM HEM . T 10 HEM K 1 402 402 HEM HEM . U 11 ZL5 K 1 403 1 ZL5 ZLE . V 10 HEM T 1 401 401 HEM HEM . W 10 HEM T 1 402 402 HEM HEM . X 11 ZL5 T 1 403 1 ZL5 ZLE . Y 12 HEC D 1 301 3 HEC HEC . Z 12 HEC N 1 301 3 HEC HEC . AA 13 FES C 1 301 4 FES FES . BA 13 FES M 1 301 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . V 10 155.402 160.421 113.402 1 91.33 ? CHA HEM 401 T 1 HETATM 2 C CHB HEM . . . V 10 157.151 160.76 117.919 1 91.33 ? CHB HEM 401 T 1 HETATM 3 C CHC HEM . . . V 10 153.71 157.762 119.497 1 91.33 ? CHC HEM 401 T 1 HETATM 4 C CHD HEM . . . V 10 152.254 157.067 114.936 1 91.33 ? CHD HEM 401 T 1 HETATM 5 C C1A HEM . . . V 10 156.153 160.796 114.491 1 91.33 ? C1A HEM 401 T 1 HETATM 6 C C2A HEM . . . V 10 157.242 161.748 114.487 1 91.33 ? C2A HEM 401 T 1 HETATM 7 C C3A HEM . . . V 10 157.72 161.839 115.729 1 91.33 ? C3A HEM 401 T 1 HETATM 8 C C4A HEM . . . V 10 156.957 160.947 116.57 1 91.33 ? C4A HEM 401 T 1 HETATM 9 C CMA HEM . . . V 10 158.884 162.738 116.198 1 91.33 ? CMA HEM 401 T 1 HETATM 10 C CAA HEM . . . V 10 157.756 162.534 113.264 1 91.33 ? CAA HEM 401 T 1 HETATM 11 C CBA HEM . . . V 10 156.63 163.371 112.677 1 91.33 ? CBA HEM 401 T 1 HETATM 12 C CGA HEM . . . V 10 157.213 164.384 111.732 1 91.33 ? CGA HEM 401 T 1 HETATM 13 O O1A HEM . . . V 10 156.473 165.309 111.314 1 91.33 ? O1A HEM 401 T 1 HETATM 14 O O2A HEM . . . V 10 158.419 164.271 111.4 1 91.33 ? O2A HEM 401 T 1 HETATM 15 C C1B HEM . . . V 10 156.357 160.003 118.748 1 91.33 ? C1B HEM 401 T 1 HETATM 16 C C2B HEM . . . V 10 156.48 159.895 120.187 1 91.33 ? C2B HEM 401 T 1 HETATM 17 C C3B HEM . . . V 10 155.521 159.069 120.618 1 91.33 ? C3B HEM 401 T 1 HETATM 18 C C4B HEM . . . V 10 154.773 158.626 119.466 1 91.33 ? C4B HEM 401 T 1 HETATM 19 C CMB HEM . . . V 10 157.54 160.633 121.032 1 91.33 ? CMB HEM 401 T 1 HETATM 20 C CAB HEM . . . V 10 155.208 158.603 122.058 1 91.33 ? CAB HEM 401 T 1 HETATM 21 C CBB HEM . . . V 10 156.042 158.83 123.075 1 91.33 ? CBB HEM 401 T 1 HETATM 22 C C1C HEM . . . V 10 152.987 157.36 118.404 1 91.33 ? C1C HEM 401 T 1 HETATM 23 C C2C HEM . . . V 10 151.757 156.608 118.451 1 91.33 ? C2C HEM 401 T 1 HETATM 24 C C3C HEM . . . V 10 151.355 156.407 117.191 1 91.33 ? C3C HEM 401 T 1 HETATM 25 C C4C HEM . . . V 10 152.312 157.042 116.31 1 91.33 ? C4C HEM 401 T 1 HETATM 26 C CMC HEM . . . V 10 151.085 156.135 119.759 1 91.33 ? CMC HEM 401 T 1 HETATM 27 C CAC HEM . . . V 10 150.094 155.663 116.708 1 91.33 ? CAC HEM 401 T 1 HETATM 28 C CBC HEM . . . V 10 149.221 155.151 117.577 1 91.33 ? CBC HEM 401 T 1 HETATM 29 C C1D HEM . . . V 10 152.935 157.95 114.13 1 91.33 ? C1D HEM 401 T 1 HETATM 30 C C2D HEM . . . V 10 152.684 158.187 112.726 1 91.33 ? C2D HEM 401 T 1 HETATM 31 C C3D HEM . . . V 10 153.553 159.108 112.3 1 91.33 ? C3D HEM 401 T 1 HETATM 32 C C4D HEM . . . V 10 154.384 159.493 113.422 1 91.33 ? C4D HEM 401 T 1 HETATM 33 C CMD HEM . . . V 10 151.598 157.483 111.889 1 91.33 ? CMD HEM 401 T 1 HETATM 34 C CAD HEM . . . V 10 153.665 159.689 110.875 1 91.33 ? CAD HEM 401 T 1 HETATM 35 C CBD HEM . . . V 10 152.305 160.219 110.432 1 91.33 ? CBD HEM 401 T 1 HETATM 36 C CGD HEM . . . V 10 152.428 161.609 109.864 1 91.33 ? CGD HEM 401 T 1 HETATM 37 O O1D HEM . . . V 10 151.608 161.959 108.979 1 91.33 ? O1D HEM 401 T 1 HETATM 38 O O2D HEM . . . V 10 153.338 162.37 110.284 1 91.33 ? O2D HEM 401 T 1 HETATM 39 N NA HEM . . . V 10 156.009 160.325 115.781 1 91.33 ? NA HEM 401 T 1 HETATM 40 N NB HEM . . . V 10 155.303 159.215 118.34 1 91.33 ? NB HEM 401 T 1 HETATM 41 N NC HEM . . . V 10 153.298 157.616 117.084 1 91.33 ? NC HEM 401 T 1 HETATM 42 N ND HEM . . . V 10 153.98 158.764 114.523 1 91.33 ? ND HEM 401 T 1 HETATM 43 FE FE HEM . . . V 10 154.538 159.116 116.452 1 91.33 ? FE HEM 401 T 1 HETATM 44 H HHB HEM . . . V 10 157.866 161.279 118.341 1 91.33 ? HHB HEM 401 T 1 HETATM 45 H HHC HEM . . . V 10 153.547 157.287 120.339 1 91.33 ? HHC HEM 401 T 1 HETATM 46 H HHD HEM . . . V 10 151.851 156.29 114.495 1 91.33 ? HHD HEM 401 T 1 HETATM 47 H HMA HEM . . . V 10 159.671 162.571 115.639 1 91.33 ? HMA HEM 401 T 1 HETATM 48 H HMAA HEM . . . V 10 159.101 162.534 117.132 1 91.33 ? HMAA HEM 401 T 1 HETATM 49 H HMAB HEM . . . V 10 158.622 163.678 116.12 1 91.33 ? HMAB HEM 401 T 1 HETATM 50 H HAA HEM . . . V 10 158.064 161.915 112.587 1 91.33 ? HAA HEM 401 T 1 HETATM 51 H HAAA HEM . . . V 10 158.482 163.117 113.534 1 91.33 ? HAAA HEM 401 T 1 HETATM 52 H HBA HEM . . . V 10 156.157 163.825 113.392 1 91.33 ? HBA HEM 401 T 1 HETATM 53 H HBAA HEM . . . V 10 156.022 162.794 112.192 1 91.33 ? HBAA HEM 401 T 1 HETATM 54 H HMB HEM . . . V 10 157.152 160.914 121.875 1 91.33 ? HMB HEM 401 T 1 HETATM 55 H HMBA HEM . . . V 10 157.848 161.414 120.547 1 91.33 ? HMBA HEM 401 T 1 HETATM 56 H HMBB HEM . . . V 10 158.291 160.041 121.196 1 91.33 ? HMBB HEM 401 T 1 HETATM 57 H HAB HEM . . . V 10 154.382 158.143 122.228 1 91.33 ? HAB HEM 401 T 1 HETATM 58 H HBB HEM . . . V 10 155.687 158.964 123.967 1 91.33 ? HBB HEM 401 T 1 HETATM 59 H HBBA HEM . . . V 10 156.994 158.914 122.917 1 91.33 ? HBBA HEM 401 T 1 HETATM 60 H HMC HEM . . . V 10 150.141 156.353 119.735 1 91.33 ? HMC HEM 401 T 1 HETATM 61 H HMCA HEM . . . V 10 151.496 156.582 120.515 1 91.33 ? HMCA HEM 401 T 1 HETATM 62 H HMCB HEM . . . V 10 151.197 155.177 119.854 1 91.33 ? HMCB HEM 401 T 1 HETATM 63 H HAC HEM . . . V 10 149.92 155.592 115.766 1 91.33 ? HAC HEM 401 T 1 HETATM 64 H HBC HEM . . . V 10 148.271 155.179 117.382 1 91.33 ? HBC HEM 401 T 1 HETATM 65 H HBCA HEM . . . V 10 149.532 154.68 118.364 1 91.33 ? HBCA HEM 401 T 1 HETATM 66 H HMD HEM . . . V 10 151.622 156.521 112.075 1 91.33 ? HMD HEM 401 T 1 HETATM 67 H HMDA HEM . . . V 10 151.764 157.633 110.936 1 91.33 ? HMDA HEM 401 T 1 HETATM 68 H HMDB HEM . . . V 10 150.717 157.837 112.131 1 91.33 ? HMDB HEM 401 T 1 HETATM 69 H HAD HEM . . . V 10 153.947 158.99 110.266 1 91.33 ? HAD HEM 401 T 1 HETATM 70 H HADA HEM . . . V 10 154.322 160.401 110.868 1 91.33 ? HADA HEM 401 T 1 HETATM 71 H HBD HEM . . . V 10 151.705 160.238 111.192 1 91.33 ? HBD HEM 401 T 1 HETATM 72 H HBDA HEM . . . V 10 151.94 159.631 109.752 1 91.33 ? HBDA HEM 401 T 1 HETATM 73 H HHA HEM . . . V 10 155.754 160.668 112.521 1 91.33 ? HHA HEM 401 T 1 # _model_server_stats.io_time_ms 436 _model_server_stats.parse_time_ms 83 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 73 #