data_7RJK # _model_server_result.job_id OUio8jIlb7lTScx3qH7AAw _model_server_result.datetime_utc '2024-11-18 13:40:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7RJK # _exptl.entry_id 7RJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RJK _cell.length_a 49.658 _cell.length_b 49.658 _cell.length_c 255.611 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,K,M 1 1 B,D,G,H,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 3 C GLY 56 1_555 C N ALY 4 C ALY 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 C C ALY 4 C ALY 57 1_555 C N GLY 5 C GLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 C C GLY 6 C GLY 59 1_555 C N ALY 7 C ALY 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 C C ALY 7 C ALY 60 1_555 C N ASN 8 C ASN 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 D C GLY 3 D GLY 56 1_555 D N ALY 4 D ALY 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 D C ALY 4 D ALY 57 1_555 D N GLY 5 D GLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 D C GLY 6 D GLY 59 1_555 D N ALY 7 D ALY 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 D C ALY 7 D ALY 60 1_555 D N ASN 8 D ASN 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 111 n n C1 C2 EDO sing 112 n n C1 H11 EDO sing 113 n n C1 H12 EDO sing 114 n n O1 HO1 EDO sing 115 n n C2 O2 EDO sing 116 n n C2 H21 EDO sing 117 n n C2 H22 EDO sing 118 n n O2 HO2 EDO sing 119 n n # _atom_sites.entry_id 7RJK _atom_sites.fract_transf_matrix[1][1] 0.020138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 201 1 EDO EDO . F 3 EDO A 1 202 2 EDO EDO . G 4 SO4 B 1 201 1 SO4 SO4 . H 4 SO4 B 1 202 2 SO4 SO4 . I 3 EDO B 1 203 3 EDO EDO . J 5 GOL B 1 204 1 GOL GOL . K 6 HOH A 1 301 214 HOH HOH . K 6 HOH A 2 302 196 HOH HOH . K 6 HOH A 3 303 88 HOH HOH . K 6 HOH A 4 304 215 HOH HOH . K 6 HOH A 5 305 200 HOH HOH . K 6 HOH A 6 306 252 HOH HOH . K 6 HOH A 7 307 190 HOH HOH . K 6 HOH A 8 308 69 HOH HOH . K 6 HOH A 9 309 165 HOH HOH . K 6 HOH A 10 310 241 HOH HOH . K 6 HOH A 11 311 125 HOH HOH . K 6 HOH A 12 312 245 HOH HOH . K 6 HOH A 13 313 57 HOH HOH . K 6 HOH A 14 314 4 HOH HOH . K 6 HOH A 15 315 114 HOH HOH . K 6 HOH A 16 316 142 HOH HOH . K 6 HOH A 17 317 244 HOH HOH . K 6 HOH A 18 318 162 HOH HOH . K 6 HOH A 19 319 141 HOH HOH . K 6 HOH A 20 320 23 HOH HOH . K 6 HOH A 21 321 133 HOH HOH . K 6 HOH A 22 322 249 HOH HOH . K 6 HOH A 23 323 79 HOH HOH . K 6 HOH A 24 324 140 HOH HOH . K 6 HOH A 25 325 38 HOH HOH . K 6 HOH A 26 326 74 HOH HOH . K 6 HOH A 27 327 62 HOH HOH . K 6 HOH A 28 328 132 HOH HOH . K 6 HOH A 29 329 20 HOH HOH . K 6 HOH A 30 330 219 HOH HOH . K 6 HOH A 31 331 36 HOH HOH . K 6 HOH A 32 332 56 HOH HOH . K 6 HOH A 33 333 147 HOH HOH . K 6 HOH A 34 334 103 HOH HOH . K 6 HOH A 35 335 102 HOH HOH . K 6 HOH A 36 336 6 HOH HOH . K 6 HOH A 37 337 135 HOH HOH . K 6 HOH A 38 338 43 HOH HOH . K 6 HOH A 39 339 39 HOH HOH . K 6 HOH A 40 340 24 HOH HOH . K 6 HOH A 41 341 60 HOH HOH . K 6 HOH A 42 342 101 HOH HOH . K 6 HOH A 43 343 8 HOH HOH . K 6 HOH A 44 344 80 HOH HOH . K 6 HOH A 45 345 139 HOH HOH . K 6 HOH A 46 346 161 HOH HOH . K 6 HOH A 47 347 46 HOH HOH . K 6 HOH A 48 348 203 HOH HOH . K 6 HOH A 49 349 180 HOH HOH . K 6 HOH A 50 350 115 HOH HOH . K 6 HOH A 51 351 129 HOH HOH . K 6 HOH A 52 352 51 HOH HOH . K 6 HOH A 53 353 209 HOH HOH . K 6 HOH A 54 354 131 HOH HOH . K 6 HOH A 55 355 93 HOH HOH . K 6 HOH A 56 356 95 HOH HOH . K 6 HOH A 57 357 59 HOH HOH . K 6 HOH A 58 358 154 HOH HOH . K 6 HOH A 59 359 11 HOH HOH . K 6 HOH A 60 360 238 HOH HOH . K 6 HOH A 61 361 28 HOH HOH . K 6 HOH A 62 362 52 HOH HOH . K 6 HOH A 63 363 47 HOH HOH . K 6 HOH A 64 364 63 HOH HOH . K 6 HOH A 65 365 71 HOH HOH . K 6 HOH A 66 366 237 HOH HOH . K 6 HOH A 67 367 250 HOH HOH . K 6 HOH A 68 368 9 HOH HOH . K 6 HOH A 69 369 67 HOH HOH . K 6 HOH A 70 370 157 HOH HOH . K 6 HOH A 71 371 97 HOH HOH . K 6 HOH A 72 372 116 HOH HOH . K 6 HOH A 73 373 213 HOH HOH . K 6 HOH A 74 374 17 HOH HOH . K 6 HOH A 75 375 58 HOH HOH . K 6 HOH A 76 376 85 HOH HOH . K 6 HOH A 77 377 199 HOH HOH . K 6 HOH A 78 378 34 HOH HOH . K 6 HOH A 79 379 236 HOH HOH . K 6 HOH A 80 380 212 HOH HOH . K 6 HOH A 81 381 205 HOH HOH . K 6 HOH A 82 382 122 HOH HOH . K 6 HOH A 83 383 111 HOH HOH . K 6 HOH A 84 384 145 HOH HOH . K 6 HOH A 85 385 158 HOH HOH . K 6 HOH A 86 386 179 HOH HOH . K 6 HOH A 87 387 159 HOH HOH . K 6 HOH A 88 388 255 HOH HOH . K 6 HOH A 89 389 185 HOH HOH . K 6 HOH A 90 390 217 HOH HOH . K 6 HOH A 91 391 170 HOH HOH . K 6 HOH A 92 392 112 HOH HOH . K 6 HOH A 93 393 202 HOH HOH . K 6 HOH A 94 394 240 HOH HOH . K 6 HOH A 95 395 118 HOH HOH . K 6 HOH A 96 396 221 HOH HOH . K 6 HOH A 97 397 176 HOH HOH . K 6 HOH A 98 398 218 HOH HOH . K 6 HOH A 99 399 119 HOH HOH . K 6 HOH A 100 400 242 HOH HOH . K 6 HOH A 101 401 106 HOH HOH . K 6 HOH A 102 402 216 HOH HOH . K 6 HOH A 103 403 223 HOH HOH . K 6 HOH A 104 404 226 HOH HOH . K 6 HOH A 105 405 220 HOH HOH . K 6 HOH A 106 406 81 HOH HOH . K 6 HOH A 107 407 227 HOH HOH . K 6 HOH A 108 408 174 HOH HOH . L 6 HOH B 1 301 207 HOH HOH . L 6 HOH B 2 302 222 HOH HOH . L 6 HOH B 3 303 188 HOH HOH . L 6 HOH B 4 304 73 HOH HOH . L 6 HOH B 5 305 75 HOH HOH . L 6 HOH B 6 306 231 HOH HOH . L 6 HOH B 7 307 155 HOH HOH . L 6 HOH B 8 308 160 HOH HOH . L 6 HOH B 9 309 192 HOH HOH . L 6 HOH B 10 310 87 HOH HOH . L 6 HOH B 11 311 186 HOH HOH . L 6 HOH B 12 312 156 HOH HOH . L 6 HOH B 13 313 86 HOH HOH . L 6 HOH B 14 314 76 HOH HOH . L 6 HOH B 15 315 55 HOH HOH . L 6 HOH B 16 316 7 HOH HOH . L 6 HOH B 17 317 152 HOH HOH . L 6 HOH B 18 318 105 HOH HOH . L 6 HOH B 19 319 109 HOH HOH . L 6 HOH B 20 320 83 HOH HOH . L 6 HOH B 21 321 29 HOH HOH . L 6 HOH B 22 322 230 HOH HOH . L 6 HOH B 23 323 195 HOH HOH . L 6 HOH B 24 324 26 HOH HOH . L 6 HOH B 25 325 14 HOH HOH . L 6 HOH B 26 326 45 HOH HOH . L 6 HOH B 27 327 61 HOH HOH . L 6 HOH B 28 328 68 HOH HOH . L 6 HOH B 29 329 82 HOH HOH . L 6 HOH B 30 330 25 HOH HOH . L 6 HOH B 31 331 210 HOH HOH . L 6 HOH B 32 332 149 HOH HOH . L 6 HOH B 33 333 175 HOH HOH . L 6 HOH B 34 334 18 HOH HOH . L 6 HOH B 35 335 64 HOH HOH . L 6 HOH B 36 336 104 HOH HOH . L 6 HOH B 37 337 130 HOH HOH . L 6 HOH B 38 338 5 HOH HOH . L 6 HOH B 39 339 191 HOH HOH . L 6 HOH B 40 340 53 HOH HOH . L 6 HOH B 41 341 248 HOH HOH . L 6 HOH B 42 342 22 HOH HOH . L 6 HOH B 43 343 2 HOH HOH . L 6 HOH B 44 344 94 HOH HOH . L 6 HOH B 45 345 13 HOH HOH . L 6 HOH B 46 346 41 HOH HOH . L 6 HOH B 47 347 251 HOH HOH . L 6 HOH B 48 348 19 HOH HOH . L 6 HOH B 49 349 15 HOH HOH . L 6 HOH B 50 350 123 HOH HOH . L 6 HOH B 51 351 37 HOH HOH . L 6 HOH B 52 352 40 HOH HOH . L 6 HOH B 53 353 42 HOH HOH . L 6 HOH B 54 354 108 HOH HOH . L 6 HOH B 55 355 113 HOH HOH . L 6 HOH B 56 356 16 HOH HOH . L 6 HOH B 57 357 12 HOH HOH . L 6 HOH B 58 358 84 HOH HOH . L 6 HOH B 59 359 124 HOH HOH . L 6 HOH B 60 360 100 HOH HOH . L 6 HOH B 61 361 194 HOH HOH . L 6 HOH B 62 362 92 HOH HOH . L 6 HOH B 63 363 225 HOH HOH . L 6 HOH B 64 364 211 HOH HOH . L 6 HOH B 65 365 206 HOH HOH . L 6 HOH B 66 366 110 HOH HOH . L 6 HOH B 67 367 163 HOH HOH . L 6 HOH B 68 368 32 HOH HOH . L 6 HOH B 69 369 107 HOH HOH . L 6 HOH B 70 370 49 HOH HOH . L 6 HOH B 71 371 189 HOH HOH . L 6 HOH B 72 372 78 HOH HOH . L 6 HOH B 73 373 232 HOH HOH . L 6 HOH B 74 374 27 HOH HOH . L 6 HOH B 75 375 91 HOH HOH . L 6 HOH B 76 376 10 HOH HOH . L 6 HOH B 77 377 126 HOH HOH . L 6 HOH B 78 378 33 HOH HOH . L 6 HOH B 79 379 90 HOH HOH . L 6 HOH B 80 380 144 HOH HOH . L 6 HOH B 81 381 35 HOH HOH . L 6 HOH B 82 382 99 HOH HOH . L 6 HOH B 83 383 66 HOH HOH . L 6 HOH B 84 384 138 HOH HOH . L 6 HOH B 85 385 1 HOH HOH . L 6 HOH B 86 386 247 HOH HOH . L 6 HOH B 87 387 253 HOH HOH . L 6 HOH B 88 388 30 HOH HOH . L 6 HOH B 89 389 21 HOH HOH . L 6 HOH B 90 390 134 HOH HOH . L 6 HOH B 91 391 151 HOH HOH . L 6 HOH B 92 392 54 HOH HOH . L 6 HOH B 93 393 3 HOH HOH . L 6 HOH B 94 394 150 HOH HOH . L 6 HOH B 95 395 229 HOH HOH . L 6 HOH B 96 396 143 HOH HOH . L 6 HOH B 97 397 187 HOH HOH . L 6 HOH B 98 398 65 HOH HOH . L 6 HOH B 99 399 178 HOH HOH . L 6 HOH B 100 400 96 HOH HOH . L 6 HOH B 101 401 146 HOH HOH . L 6 HOH B 102 402 153 HOH HOH . L 6 HOH B 103 403 184 HOH HOH . L 6 HOH B 104 404 72 HOH HOH . L 6 HOH B 105 405 208 HOH HOH . L 6 HOH B 106 406 128 HOH HOH . L 6 HOH B 107 407 136 HOH HOH . L 6 HOH B 108 408 228 HOH HOH . L 6 HOH B 109 409 243 HOH HOH . L 6 HOH B 110 410 254 HOH HOH . L 6 HOH B 111 411 169 HOH HOH . L 6 HOH B 112 412 181 HOH HOH . L 6 HOH B 113 413 182 HOH HOH . L 6 HOH B 114 414 201 HOH HOH . L 6 HOH B 115 415 246 HOH HOH . L 6 HOH B 116 416 167 HOH HOH . L 6 HOH B 117 417 98 HOH HOH . L 6 HOH B 118 418 120 HOH HOH . L 6 HOH B 119 419 168 HOH HOH . L 6 HOH B 120 420 197 HOH HOH . L 6 HOH B 121 421 239 HOH HOH . L 6 HOH B 122 422 235 HOH HOH . L 6 HOH B 123 423 173 HOH HOH . L 6 HOH B 124 424 183 HOH HOH . L 6 HOH B 125 425 177 HOH HOH . L 6 HOH B 126 426 198 HOH HOH . L 6 HOH B 127 427 256 HOH HOH . L 6 HOH B 128 428 172 HOH HOH . L 6 HOH B 129 429 166 HOH HOH . L 6 HOH B 130 430 117 HOH HOH . L 6 HOH B 131 431 44 HOH HOH . L 6 HOH B 132 432 193 HOH HOH . L 6 HOH B 133 433 121 HOH HOH . L 6 HOH B 134 434 77 HOH HOH . L 6 HOH B 135 435 70 HOH HOH . L 6 HOH B 136 436 171 HOH HOH . M 6 HOH C 1 101 233 HOH HOH . M 6 HOH C 2 102 137 HOH HOH . M 6 HOH C 3 103 89 HOH HOH . M 6 HOH C 4 104 224 HOH HOH . M 6 HOH C 5 105 31 HOH HOH . M 6 HOH C 6 106 164 HOH HOH . M 6 HOH C 7 107 48 HOH HOH . M 6 HOH C 8 108 234 HOH HOH . N 6 HOH D 1 101 257 HOH HOH . N 6 HOH D 2 102 50 HOH HOH . N 6 HOH D 3 103 204 HOH HOH . N 6 HOH D 4 104 127 HOH HOH . N 6 HOH D 5 105 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -9.919 21.35 -4.105 1 38.1 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . F 3 -10.071 22.227 -2.981 1 40.31 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . F 3 -10.64 21.959 -5.299 1 38.88 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . F 3 -10.341 23.365 -5.355 1 36.68 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 4 #