data_7RJO # _model_server_result.job_id lMyuds-TuABWbACQ-NfsEw _model_server_result.datetime_utc '2024-10-19 03:56:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7RJO # _exptl.entry_id 7RJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RJO _cell.length_a 48.454 _cell.length_b 52.08 _cell.length_c 53.325 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 3 B GLY 59 1_555 B N ALY 4 B ALY 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale2 B C ALY 4 B ALY 60 1_555 B N GLY 5 B GLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale3 B C GLY 6 B GLY 62 1_555 B N ALY 7 B ALY 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C ALY 7 B ALY 63 1_555 B N ASN 8 B ASN 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O MET 91 A MET 132 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc2 C NA NA . A NA 201 1_555 H O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc3 C NA NA . A NA 201 1_555 H O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 7RJO _atom_sites.fract_transf_matrix[1][1] 0.020638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 201 201 NA NA . D 4 GOL A 1 202 1 GOL GOL . E 4 GOL A 1 203 2 GOL GOL . F 5 ACT A 1 204 1 ACT ACT . G 5 ACT A 1 205 3 ACT ACT . H 6 HOH A 1 301 68 HOH HOH . H 6 HOH A 2 302 51 HOH HOH . H 6 HOH A 3 303 152 HOH HOH . H 6 HOH A 4 304 137 HOH HOH . H 6 HOH A 5 305 89 HOH HOH . H 6 HOH A 6 306 105 HOH HOH . H 6 HOH A 7 307 58 HOH HOH . H 6 HOH A 8 308 111 HOH HOH . H 6 HOH A 9 309 28 HOH HOH . H 6 HOH A 10 310 42 HOH HOH . H 6 HOH A 11 311 104 HOH HOH . H 6 HOH A 12 312 97 HOH HOH . H 6 HOH A 13 313 143 HOH HOH . H 6 HOH A 14 314 57 HOH HOH . H 6 HOH A 15 315 98 HOH HOH . H 6 HOH A 16 316 1 HOH HOH . H 6 HOH A 17 317 93 HOH HOH . H 6 HOH A 18 318 151 HOH HOH . H 6 HOH A 19 319 62 HOH HOH . H 6 HOH A 20 320 90 HOH HOH . H 6 HOH A 21 321 43 HOH HOH . H 6 HOH A 22 322 4 HOH HOH . H 6 HOH A 23 323 74 HOH HOH . H 6 HOH A 24 324 123 HOH HOH . H 6 HOH A 25 325 103 HOH HOH . H 6 HOH A 26 326 76 HOH HOH . H 6 HOH A 27 327 36 HOH HOH . H 6 HOH A 28 328 60 HOH HOH . H 6 HOH A 29 329 86 HOH HOH . H 6 HOH A 30 330 88 HOH HOH . H 6 HOH A 31 331 56 HOH HOH . H 6 HOH A 32 332 23 HOH HOH . H 6 HOH A 33 333 7 HOH HOH . H 6 HOH A 34 334 73 HOH HOH . H 6 HOH A 35 335 29 HOH HOH . H 6 HOH A 36 336 19 HOH HOH . H 6 HOH A 37 337 12 HOH HOH . H 6 HOH A 38 338 64 HOH HOH . H 6 HOH A 39 339 20 HOH HOH . H 6 HOH A 40 340 52 HOH HOH . H 6 HOH A 41 341 55 HOH HOH . H 6 HOH A 42 342 126 HOH HOH . H 6 HOH A 43 343 3 HOH HOH . H 6 HOH A 44 344 83 HOH HOH . H 6 HOH A 45 345 122 HOH HOH . H 6 HOH A 46 346 119 HOH HOH . H 6 HOH A 47 347 5 HOH HOH . H 6 HOH A 48 348 72 HOH HOH . H 6 HOH A 49 349 80 HOH HOH . H 6 HOH A 50 350 87 HOH HOH . H 6 HOH A 51 351 140 HOH HOH . H 6 HOH A 52 352 17 HOH HOH . H 6 HOH A 53 353 21 HOH HOH . H 6 HOH A 54 354 37 HOH HOH . H 6 HOH A 55 355 106 HOH HOH . H 6 HOH A 56 356 48 HOH HOH . H 6 HOH A 57 357 82 HOH HOH . H 6 HOH A 58 358 134 HOH HOH . H 6 HOH A 59 359 92 HOH HOH . H 6 HOH A 60 360 69 HOH HOH . H 6 HOH A 61 361 10 HOH HOH . H 6 HOH A 62 362 18 HOH HOH . H 6 HOH A 63 363 11 HOH HOH . H 6 HOH A 64 364 32 HOH HOH . H 6 HOH A 65 365 79 HOH HOH . H 6 HOH A 66 366 6 HOH HOH . H 6 HOH A 67 367 38 HOH HOH . H 6 HOH A 68 368 95 HOH HOH . H 6 HOH A 69 369 67 HOH HOH . H 6 HOH A 70 370 13 HOH HOH . H 6 HOH A 71 371 77 HOH HOH . H 6 HOH A 72 372 78 HOH HOH . H 6 HOH A 73 373 50 HOH HOH . H 6 HOH A 74 374 96 HOH HOH . H 6 HOH A 75 375 129 HOH HOH . H 6 HOH A 76 376 131 HOH HOH . H 6 HOH A 77 377 144 HOH HOH . H 6 HOH A 78 378 41 HOH HOH . H 6 HOH A 79 379 33 HOH HOH . H 6 HOH A 80 380 14 HOH HOH . H 6 HOH A 81 381 25 HOH HOH . H 6 HOH A 82 382 30 HOH HOH . H 6 HOH A 83 383 16 HOH HOH . H 6 HOH A 84 384 49 HOH HOH . H 6 HOH A 85 385 141 HOH HOH . H 6 HOH A 86 386 39 HOH HOH . H 6 HOH A 87 387 114 HOH HOH . H 6 HOH A 88 388 84 HOH HOH . H 6 HOH A 89 389 70 HOH HOH . H 6 HOH A 90 390 110 HOH HOH . H 6 HOH A 91 391 40 HOH HOH . H 6 HOH A 92 392 132 HOH HOH . H 6 HOH A 93 393 118 HOH HOH . H 6 HOH A 94 394 44 HOH HOH . H 6 HOH A 95 395 91 HOH HOH . H 6 HOH A 96 396 35 HOH HOH . H 6 HOH A 97 397 63 HOH HOH . H 6 HOH A 98 398 22 HOH HOH . H 6 HOH A 99 399 108 HOH HOH . H 6 HOH A 100 400 128 HOH HOH . H 6 HOH A 101 401 15 HOH HOH . H 6 HOH A 102 402 46 HOH HOH . H 6 HOH A 103 403 34 HOH HOH . H 6 HOH A 104 404 115 HOH HOH . H 6 HOH A 105 405 47 HOH HOH . H 6 HOH A 106 406 27 HOH HOH . H 6 HOH A 107 407 135 HOH HOH . H 6 HOH A 108 408 148 HOH HOH . H 6 HOH A 109 409 75 HOH HOH . H 6 HOH A 110 410 125 HOH HOH . H 6 HOH A 111 411 45 HOH HOH . H 6 HOH A 112 412 94 HOH HOH . H 6 HOH A 113 413 112 HOH HOH . H 6 HOH A 114 414 109 HOH HOH . H 6 HOH A 115 415 116 HOH HOH . H 6 HOH A 116 416 117 HOH HOH . H 6 HOH A 117 417 153 HOH HOH . H 6 HOH A 118 418 124 HOH HOH . H 6 HOH A 119 419 85 HOH HOH . H 6 HOH A 120 420 138 HOH HOH . H 6 HOH A 121 421 120 HOH HOH . H 6 HOH A 122 422 139 HOH HOH . H 6 HOH A 123 423 136 HOH HOH . H 6 HOH A 124 424 107 HOH HOH . H 6 HOH A 125 425 102 HOH HOH . H 6 HOH A 126 426 24 HOH HOH . H 6 HOH A 127 427 101 HOH HOH . H 6 HOH A 128 428 31 HOH HOH . H 6 HOH A 129 429 147 HOH HOH . H 6 HOH A 130 430 26 HOH HOH . H 6 HOH A 131 431 142 HOH HOH . H 6 HOH A 132 432 130 HOH HOH . H 6 HOH A 133 433 113 HOH HOH . H 6 HOH A 134 434 66 HOH HOH . H 6 HOH A 135 435 146 HOH HOH . H 6 HOH A 136 436 145 HOH HOH . H 6 HOH A 137 437 71 HOH HOH . H 6 HOH A 138 438 133 HOH HOH . I 6 HOH B 1 101 65 HOH HOH . I 6 HOH B 2 102 9 HOH HOH . I 6 HOH B 3 103 54 HOH HOH . I 6 HOH B 4 104 8 HOH HOH . I 6 HOH B 5 105 121 HOH HOH . I 6 HOH B 6 106 61 HOH HOH . I 6 HOH B 7 107 53 HOH HOH . I 6 HOH B 8 108 2 HOH HOH . I 6 HOH B 9 109 99 HOH HOH . I 6 HOH B 10 110 59 HOH HOH . I 6 HOH B 11 111 150 HOH HOH . I 6 HOH B 12 112 149 HOH HOH . I 6 HOH B 13 113 81 HOH HOH . I 6 HOH B 14 114 127 HOH HOH . I 6 HOH B 15 115 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -15.579 0.03 -2.986 1 34.8 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 4 -14.713 -0.602 -3.923 1 42.62 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 4 -16.475 1.068 -3.73 1 34.15 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 4 -17.187 0.547 -4.806 1 46.21 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 4 -17.479 1.593 -2.654 1 34.16 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 4 -16.744 2.184 -1.629 1 34.78 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . D 4 -15.088 0.489 -2.286 1 41.78 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . D 4 -16.154 -0.607 -2.533 1 41.78 ? H12 GOL 202 A 1 HETATM 9 H HO1 GOL . . . D 4 -15.106 -0.567 -4.676 1 51.17 ? HO1 GOL 202 A 1 HETATM 10 H H2 GOL . . . D 4 -15.894 1.756 -4.089 1 41.01 ? H2 GOL 202 A 1 HETATM 11 H HO2 GOL . . . D 4 -17.608 1.186 -5.183 1 55.49 ? HO2 GOL 202 A 1 HETATM 12 H H31 GOL . . . D 4 -18.024 0.85 -2.353 1 41.01 ? H31 GOL 202 A 1 HETATM 13 H H32 GOL . . . D 4 -18.096 2.206 -3.083 1 41.01 ? H32 GOL 202 A 1 HETATM 14 H HO3 GOL . . . D 4 -16.959 2.999 -1.606 1 41.76 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #