data_7RJP # _model_server_result.job_id hNWuRrrm8YkcGESerKz3kg _model_server_result.datetime_utc '2024-10-19 03:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7RJP # _exptl.entry_id 7RJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RJP _cell.length_a 43.043 _cell.length_b 51.56 _cell.length_c 57.384 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 1 B ARG 270 1_555 B N ALY 2 B ALY 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C ALY 2 B ALY 271 1_555 B N GLY 3 B GLY 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale3 B C VAL 4 B VAL 273 1_555 B N ALY 5 B ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C ALY 5 B ALY 274 1_555 B N SER 6 B SER 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O LEU 22 A LEU 63 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A O ARG 27 A ARG 68 1_555 J NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc3 A OH TYR 56 A TYR 97 1_555 I NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc4 A OH TYR 57 A TYR 98 1_555 H NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc5 A O MET 64 A MET 105 1_555 I NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc6 A O ASN 76 A ASN 117 1_555 G NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc7 A O TYR 78 A TYR 119 1_555 G NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc8 A OG1 THR 93 A THR 134 1_555 J NA NA . A NA 208 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc9 A O PRO 101 A PRO 142 1_555 F NA NA . A NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc10 A O ASP 103 A ASP 144 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc11 D NA NA . A NA 202 1_555 Q O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc12 E NA NA . A NA 203 1_555 Q O HOH . A HOH 406 4_445 ? ? ? ? A ? ? ? ? ? ? ? 2.711 ? metalc ? metalc13 E NA NA . A NA 203 1_555 Q O HOH . A HOH 406 4_445 ? ? ? ? B ? ? ? ? ? ? ? 2.962 ? metalc ? metalc14 E NA NA . A NA 203 1_555 Q O HOH . A HOH 411 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc15 E NA NA . A NA 203 1_555 Q O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc16 F NA NA . A NA 204 1_555 Q O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc17 H NA NA . A NA 206 1_555 Q O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc18 I NA NA . A NA 207 1_555 Q O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc19 J NA NA . A NA 208 1_555 Q O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7RJP _atom_sites.fract_transf_matrix[1][1] 0.023233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 201 EDO EDO . D 4 NA A 1 202 1 NA NA . E 4 NA A 1 203 2 NA NA . F 4 NA A 1 204 3 NA NA . G 4 NA A 1 205 6 NA NA . H 4 NA A 1 206 7 NA NA . I 4 NA A 1 207 9 NA NA . J 4 NA A 1 208 10 NA NA . K 4 NA A 1 209 11 NA NA . L 5 CL A 1 210 2 CL CL . M 5 CL A 1 211 5 CL CL . N 5 CL A 1 212 6 CL CL . O 6 GOL A 1 213 1 GOL GOL . P 5 CL B 1 301 3 CL CL . Q 7 HOH A 1 301 185 HOH HOH . Q 7 HOH A 2 302 138 HOH HOH . Q 7 HOH A 3 303 154 HOH HOH . Q 7 HOH A 4 304 156 HOH HOH . Q 7 HOH A 5 305 173 HOH HOH . Q 7 HOH A 6 306 93 HOH HOH . Q 7 HOH A 7 307 150 HOH HOH . Q 7 HOH A 8 308 155 HOH HOH . Q 7 HOH A 9 309 146 HOH HOH . Q 7 HOH A 10 310 200 HOH HOH . Q 7 HOH A 11 311 206 HOH HOH . Q 7 HOH A 12 312 166 HOH HOH . Q 7 HOH A 13 313 162 HOH HOH . Q 7 HOH A 14 314 44 HOH HOH . Q 7 HOH A 15 315 20 HOH HOH . Q 7 HOH A 16 316 190 HOH HOH . Q 7 HOH A 17 317 126 HOH HOH . Q 7 HOH A 18 318 131 HOH HOH . Q 7 HOH A 19 319 143 HOH HOH . Q 7 HOH A 20 320 65 HOH HOH . Q 7 HOH A 21 321 63 HOH HOH . Q 7 HOH A 22 322 90 HOH HOH . Q 7 HOH A 23 323 180 HOH HOH . Q 7 HOH A 24 324 139 HOH HOH . Q 7 HOH A 25 325 130 HOH HOH . Q 7 HOH A 26 326 3 HOH HOH . Q 7 HOH A 27 327 189 HOH HOH . Q 7 HOH A 28 328 107 HOH HOH . Q 7 HOH A 29 329 38 HOH HOH . Q 7 HOH A 30 330 109 HOH HOH . Q 7 HOH A 31 331 101 HOH HOH . Q 7 HOH A 32 332 171 HOH HOH . Q 7 HOH A 33 333 72 HOH HOH . Q 7 HOH A 34 334 134 HOH HOH . Q 7 HOH A 35 335 89 HOH HOH . Q 7 HOH A 36 336 47 HOH HOH . Q 7 HOH A 37 337 179 HOH HOH . Q 7 HOH A 38 338 28 HOH HOH . Q 7 HOH A 39 339 151 HOH HOH . Q 7 HOH A 40 340 182 HOH HOH . Q 7 HOH A 41 341 26 HOH HOH . Q 7 HOH A 42 342 205 HOH HOH . Q 7 HOH A 43 343 9 HOH HOH . Q 7 HOH A 44 344 78 HOH HOH . Q 7 HOH A 45 345 187 HOH HOH . Q 7 HOH A 46 346 135 HOH HOH . Q 7 HOH A 47 347 58 HOH HOH . Q 7 HOH A 48 348 41 HOH HOH . Q 7 HOH A 49 349 18 HOH HOH . Q 7 HOH A 50 350 25 HOH HOH . Q 7 HOH A 51 351 163 HOH HOH . Q 7 HOH A 52 352 144 HOH HOH . Q 7 HOH A 53 353 80 HOH HOH . Q 7 HOH A 54 354 159 HOH HOH . Q 7 HOH A 55 355 14 HOH HOH . Q 7 HOH A 56 356 31 HOH HOH . Q 7 HOH A 57 357 197 HOH HOH . Q 7 HOH A 58 358 10 HOH HOH . Q 7 HOH A 59 359 24 HOH HOH . Q 7 HOH A 60 360 125 HOH HOH . Q 7 HOH A 61 361 76 HOH HOH . Q 7 HOH A 62 362 66 HOH HOH . Q 7 HOH A 63 363 19 HOH HOH . Q 7 HOH A 64 364 21 HOH HOH . Q 7 HOH A 65 365 148 HOH HOH . Q 7 HOH A 66 366 127 HOH HOH . Q 7 HOH A 67 367 7 HOH HOH . Q 7 HOH A 68 368 87 HOH HOH . Q 7 HOH A 69 369 88 HOH HOH . Q 7 HOH A 70 370 43 HOH HOH . Q 7 HOH A 71 371 124 HOH HOH . Q 7 HOH A 72 372 184 HOH HOH . Q 7 HOH A 73 373 60 HOH HOH . Q 7 HOH A 74 374 56 HOH HOH . Q 7 HOH A 75 375 208 HOH HOH . Q 7 HOH A 76 376 62 HOH HOH . Q 7 HOH A 77 377 98 HOH HOH . Q 7 HOH A 78 378 132 HOH HOH . Q 7 HOH A 79 379 70 HOH HOH . Q 7 HOH A 80 380 16 HOH HOH . Q 7 HOH A 81 381 1 HOH HOH . Q 7 HOH A 82 382 57 HOH HOH . Q 7 HOH A 83 383 59 HOH HOH . Q 7 HOH A 84 384 121 HOH HOH . Q 7 HOH A 85 385 36 HOH HOH . Q 7 HOH A 86 386 105 HOH HOH . Q 7 HOH A 87 387 79 HOH HOH . Q 7 HOH A 88 388 52 HOH HOH . Q 7 HOH A 89 389 12 HOH HOH . Q 7 HOH A 90 390 176 HOH HOH . Q 7 HOH A 91 391 122 HOH HOH . Q 7 HOH A 92 392 178 HOH HOH . Q 7 HOH A 93 393 6 HOH HOH . Q 7 HOH A 94 394 116 HOH HOH . Q 7 HOH A 95 395 195 HOH HOH . Q 7 HOH A 96 396 61 HOH HOH . Q 7 HOH A 97 397 118 HOH HOH . Q 7 HOH A 98 398 55 HOH HOH . Q 7 HOH A 99 399 67 HOH HOH . Q 7 HOH A 100 400 170 HOH HOH . Q 7 HOH A 101 401 103 HOH HOH . Q 7 HOH A 102 402 4 HOH HOH . Q 7 HOH A 103 403 37 HOH HOH . Q 7 HOH A 104 404 117 HOH HOH . Q 7 HOH A 105 405 2 HOH HOH . Q 7 HOH A 106 406 194 HOH HOH . Q 7 HOH A 107 407 22 HOH HOH . Q 7 HOH A 108 408 95 HOH HOH . Q 7 HOH A 109 409 64 HOH HOH . Q 7 HOH A 110 410 46 HOH HOH . Q 7 HOH A 111 411 211 HOH HOH . Q 7 HOH A 112 412 29 HOH HOH . Q 7 HOH A 113 413 71 HOH HOH . Q 7 HOH A 114 414 27 HOH HOH . Q 7 HOH A 115 415 17 HOH HOH . Q 7 HOH A 116 416 48 HOH HOH . Q 7 HOH A 117 417 92 HOH HOH . Q 7 HOH A 118 418 193 HOH HOH . Q 7 HOH A 119 419 8 HOH HOH . Q 7 HOH A 120 420 5 HOH HOH . Q 7 HOH A 121 421 167 HOH HOH . Q 7 HOH A 122 422 129 HOH HOH . Q 7 HOH A 123 423 13 HOH HOH . Q 7 HOH A 124 424 198 HOH HOH . Q 7 HOH A 125 425 53 HOH HOH . Q 7 HOH A 126 426 33 HOH HOH . Q 7 HOH A 127 427 120 HOH HOH . Q 7 HOH A 128 428 161 HOH HOH . Q 7 HOH A 129 429 106 HOH HOH . Q 7 HOH A 130 430 183 HOH HOH . Q 7 HOH A 131 431 94 HOH HOH . Q 7 HOH A 132 432 74 HOH HOH . Q 7 HOH A 133 433 81 HOH HOH . Q 7 HOH A 134 434 49 HOH HOH . Q 7 HOH A 135 435 15 HOH HOH . Q 7 HOH A 136 436 40 HOH HOH . Q 7 HOH A 137 437 39 HOH HOH . Q 7 HOH A 138 438 188 HOH HOH . Q 7 HOH A 139 439 51 HOH HOH . Q 7 HOH A 140 440 75 HOH HOH . Q 7 HOH A 141 441 199 HOH HOH . Q 7 HOH A 142 442 45 HOH HOH . Q 7 HOH A 143 443 23 HOH HOH . Q 7 HOH A 144 444 91 HOH HOH . Q 7 HOH A 145 445 169 HOH HOH . Q 7 HOH A 146 446 136 HOH HOH . Q 7 HOH A 147 447 202 HOH HOH . Q 7 HOH A 148 448 137 HOH HOH . Q 7 HOH A 149 449 73 HOH HOH . Q 7 HOH A 150 450 128 HOH HOH . Q 7 HOH A 151 451 192 HOH HOH . Q 7 HOH A 152 452 54 HOH HOH . Q 7 HOH A 153 453 123 HOH HOH . Q 7 HOH A 154 454 68 HOH HOH . Q 7 HOH A 155 455 110 HOH HOH . Q 7 HOH A 156 456 149 HOH HOH . Q 7 HOH A 157 457 119 HOH HOH . Q 7 HOH A 158 458 174 HOH HOH . Q 7 HOH A 159 459 112 HOH HOH . Q 7 HOH A 160 460 99 HOH HOH . Q 7 HOH A 161 461 160 HOH HOH . Q 7 HOH A 162 462 145 HOH HOH . Q 7 HOH A 163 463 201 HOH HOH . Q 7 HOH A 164 464 175 HOH HOH . Q 7 HOH A 165 465 85 HOH HOH . Q 7 HOH A 166 466 34 HOH HOH . Q 7 HOH A 167 467 191 HOH HOH . Q 7 HOH A 168 468 142 HOH HOH . Q 7 HOH A 169 469 172 HOH HOH . Q 7 HOH A 170 470 115 HOH HOH . Q 7 HOH A 171 471 165 HOH HOH . Q 7 HOH A 172 472 100 HOH HOH . Q 7 HOH A 173 473 35 HOH HOH . Q 7 HOH A 174 474 50 HOH HOH . Q 7 HOH A 175 475 133 HOH HOH . Q 7 HOH A 176 476 77 HOH HOH . Q 7 HOH A 177 477 181 HOH HOH . Q 7 HOH A 178 478 140 HOH HOH . Q 7 HOH A 179 479 141 HOH HOH . Q 7 HOH A 180 480 158 HOH HOH . Q 7 HOH A 181 481 84 HOH HOH . Q 7 HOH A 182 482 210 HOH HOH . Q 7 HOH A 183 483 108 HOH HOH . Q 7 HOH A 184 484 164 HOH HOH . Q 7 HOH A 185 485 209 HOH HOH . Q 7 HOH A 186 486 97 HOH HOH . Q 7 HOH A 187 487 204 HOH HOH . Q 7 HOH A 188 488 153 HOH HOH . Q 7 HOH A 189 489 30 HOH HOH . Q 7 HOH A 190 490 11 HOH HOH . Q 7 HOH A 191 491 152 HOH HOH . Q 7 HOH A 192 492 86 HOH HOH . Q 7 HOH A 193 493 69 HOH HOH . Q 7 HOH A 194 494 102 HOH HOH . Q 7 HOH A 195 495 157 HOH HOH . Q 7 HOH A 196 496 83 HOH HOH . Q 7 HOH A 197 497 114 HOH HOH . Q 7 HOH A 198 498 82 HOH HOH . Q 7 HOH A 199 499 177 HOH HOH . Q 7 HOH A 200 500 96 HOH HOH . Q 7 HOH A 201 501 111 HOH HOH . Q 7 HOH A 202 502 113 HOH HOH . R 7 HOH B 1 401 207 HOH HOH . R 7 HOH B 2 402 147 HOH HOH . R 7 HOH B 3 403 186 HOH HOH . R 7 HOH B 4 404 32 HOH HOH . R 7 HOH B 5 405 42 HOH HOH . R 7 HOH B 6 406 196 HOH HOH . R 7 HOH B 7 407 203 HOH HOH . R 7 HOH B 8 408 104 HOH HOH . R 7 HOH B 9 409 168 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 0.952 _atom_site.Cartn_y -23.612 _atom_site.Cartn_z 4.481 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 544 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #