data_7RKB # _model_server_result.job_id XQDCxl91YjR1IaFnzzdATw _model_server_result.datetime_utc '2025-06-26 10:31:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7RKB # _exptl.entry_id 7RKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-NEOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RKB _cell.length_a 83.521 _cell.length_b 83.521 _cell.length_c 45.884 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 23 A ASN 43 1_555 A N MSE 24 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MSE 24 A MSE 44 1_555 A N ASN 25 A ASN 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C ALA 35 A ALA 55 1_555 A N MSE 36 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MSE 36 A MSE 56 1_555 A N LEU 37 A LEU 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C GLY 41 A GLY 61 1_555 A N MSE 42 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 42 A MSE 62 1_555 A N LYS 43 A LYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C LEU 66 A LEU 86 1_555 A N MSE 67 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 A C MSE 67 A MSE 87 1_555 A N ASP 68 A ASP 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C ILE 100 A ILE 120 1_555 A N MSE 101 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 A C MSE 101 A MSE 121 1_555 A N ALA 102 A ALA 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 A C LYS 104 A LYS 124 1_555 A N MSE 105 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 A C MSE 105 A MSE 125 1_555 A N ASN 106 A ASN 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale13 A C TYR 109 A TYR 129 1_555 A N MSE 110 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C MSE 110 A MSE 130 1_555 A N ARG 111 A ARG 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C LYS 145 A LYS 165 1_555 A N MSE 146 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale16 A C MSE 146 A MSE 166 1_555 A N ILE 147 A ILE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C9 H11 N5 O4' _chem_comp.formula_weight 253.215 _chem_comp.id NEU _chem_comp.mon_nstd_flag . _chem_comp.name L-NEOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-AMINO-6-((1S,2R)-1,2,3-TRIHYDROXYPROPYL)PTERIDIN-4(3H)-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 NEU sing 203 n y N2 C3 NEU sing 204 n y N2 HN2 NEU sing 205 n n C1 C10 NEU sing 206 n y C1 O11 NEU doub 207 n n C10 N9 NEU sing 208 n y C10 C5 NEU doub 209 n y N9 C8 NEU doub 210 n y C8 C7 NEU sing 211 n y C8 C16 NEU sing 212 n n C7 N6 NEU doub 213 n y C7 H7 NEU sing 214 n n N6 C5 NEU sing 215 n y C5 N4 NEU sing 216 n y N4 C3 NEU doub 217 n y C3 N13 NEU sing 218 n n N13 H131 NEU sing 219 n n N13 H132 NEU sing 220 n n C16 O21 NEU sing 221 n n C16 C26 NEU sing 222 n n C16 H16 NEU sing 223 n n O21 H21 NEU sing 224 n n C26 O22 NEU sing 225 n n C26 C28 NEU sing 226 n n C26 H26 NEU sing 227 n n O22 H22 NEU sing 228 n n C28 O24 NEU sing 229 n n C28 H281 NEU sing 230 n n C28 H282 NEU sing 231 n n O24 H24 NEU sing 232 n n # _atom_sites.entry_id 7RKB _atom_sites.fract_transf_matrix[1][1] 0.011973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NEU A 1 201 1 NEU NE0 . C 3 CL A 1 202 2 CL CL . D 3 CL A 1 203 3 CL CL . E 3 CL A 1 204 4 CL CL . F 3 CL A 1 205 5 CL CL . G 3 CL A 1 206 6 CL CL . H 4 SO4 A 1 207 7 SO4 SO4 . I 4 SO4 A 1 208 8 SO4 SO4 . J 4 SO4 A 1 209 9 SO4 SO4 . K 4 SO4 A 1 210 10 SO4 SO4 . L 5 HOH A 1 301 24 HOH HOH . L 5 HOH A 2 302 28 HOH HOH . L 5 HOH A 3 303 16 HOH HOH . L 5 HOH A 4 304 11 HOH HOH . L 5 HOH A 5 305 15 HOH HOH . L 5 HOH A 6 306 30 HOH HOH . L 5 HOH A 7 307 12 HOH HOH . L 5 HOH A 8 308 26 HOH HOH . L 5 HOH A 9 309 18 HOH HOH . L 5 HOH A 10 310 22 HOH HOH . L 5 HOH A 11 311 19 HOH HOH . L 5 HOH A 12 312 14 HOH HOH . L 5 HOH A 13 313 13 HOH HOH . L 5 HOH A 14 314 21 HOH HOH . L 5 HOH A 15 315 23 HOH HOH . L 5 HOH A 16 316 25 HOH HOH . L 5 HOH A 17 317 29 HOH HOH . L 5 HOH A 18 318 20 HOH HOH . L 5 HOH A 19 319 17 HOH HOH . L 5 HOH A 20 320 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 NEU . . . B 2 18.496 30.521 23.276 1 65.15 ? N2 NEU 201 A 1 HETATM 2 C C1 NEU . . . B 2 17.393 29.811 23.686 1 59.51 ? C1 NEU 201 A 1 HETATM 3 C C10 NEU . . . B 2 16.526 30.443 24.675 1 60.1 ? C10 NEU 201 A 1 HETATM 4 N N9 NEU . . . B 2 15.406 29.812 25.143 1 68.27 ? N9 NEU 201 A 1 HETATM 5 C C8 NEU . . . B 2 14.67 30.442 26.034 1 77.91 ? C8 NEU 201 A 1 HETATM 6 C C7 NEU . . . B 2 15.033 31.73 26.495 1 74.29 ? C7 NEU 201 A 1 HETATM 7 N N6 NEU . . . B 2 16.111 32.36 26.066 1 64.33 ? N6 NEU 201 A 1 HETATM 8 C C5 NEU . . . B 2 16.878 31.724 25.138 1 61.66 ? C5 NEU 201 A 1 HETATM 9 N N4 NEU . . . B 2 18.008 32.367 24.671 1 62.09 ? N4 NEU 201 A 1 HETATM 10 C C3 NEU . . . B 2 18.778 31.772 23.767 1 61.15 ? C3 NEU 201 A 1 HETATM 11 N N13 NEU . . . B 2 19.875 32.382 23.31 1 55.95 ? N13 NEU 201 A 1 HETATM 12 C C16 NEU . . . B 2 13.418 29.77 26.559 1 98.18 ? C16 NEU 201 A 1 HETATM 13 O O21 NEU . . . B 2 13.522 29.58 27.968 1 98.21 ? O21 NEU 201 A 1 HETATM 14 C C26 NEU . . . B 2 13.13 28.417 25.894 1 112.52 ? C26 NEU 201 A 1 HETATM 15 O O22 NEU . . . B 2 14.294 27.593 26.009 1 125.72 ? O22 NEU 201 A 1 HETATM 16 C C28 NEU . . . B 2 12.733 28.508 24.428 1 104.8 ? C28 NEU 201 A 1 HETATM 17 O O24 NEU . . . B 2 11.636 29.396 24.223 1 82.61 ? O24 NEU 201 A 1 HETATM 18 O O11 NEU . . . B 2 17.184 28.705 23.211 1 56.84 ? O11 NEU 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #