data_7RKG # _model_server_result.job_id Iw8llLQjJbHTX2QTUQDa9g _model_server_result.datetime_utc '2024-11-16 19:00:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7RKG # _exptl.entry_id 7RKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7RKG _cell.length_a 55.708 _cell.length_b 55.708 _cell.length_c 183.035 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 205 n n C1 O1 MAN sing 206 n n C1 O5 MAN sing 207 n n C1 H1 MAN sing 208 n n C2 C3 MAN sing 209 n n C2 O2 MAN sing 210 n n C2 H2 MAN sing 211 n n C3 C4 MAN sing 212 n n C3 O3 MAN sing 213 n n C3 H3 MAN sing 214 n n C4 C5 MAN sing 215 n n C4 O4 MAN sing 216 n n C4 H4 MAN sing 217 n n C5 C6 MAN sing 218 n n C5 O5 MAN sing 219 n n C5 H5 MAN sing 220 n n C6 O6 MAN sing 221 n n C6 H61 MAN sing 222 n n C6 H62 MAN sing 223 n n O1 HO1 MAN sing 224 n n O2 HO2 MAN sing 225 n n O3 HO3 MAN sing 226 n n O4 HO4 MAN sing 227 n n O6 HO6 MAN sing 228 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7RKG _atom_sites.fract_transf_matrix[1][1] 0.017951 _atom_sites.fract_transf_matrix[1][2] 0.010364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MAN A 1 201 124 MAN MAN . D 2 MAN B 1 201 125 MAN MAN . E 3 HOH A 1 301 234 HOH HOH . E 3 HOH A 2 302 181 HOH HOH . E 3 HOH A 3 303 111 HOH HOH . E 3 HOH A 4 304 25 HOH HOH . E 3 HOH A 5 305 54 HOH HOH . E 3 HOH A 6 306 266 HOH HOH . E 3 HOH A 7 307 90 HOH HOH . E 3 HOH A 8 308 84 HOH HOH . E 3 HOH A 9 309 107 HOH HOH . E 3 HOH A 10 310 96 HOH HOH . E 3 HOH A 11 311 56 HOH HOH . E 3 HOH A 12 312 20 HOH HOH . E 3 HOH A 13 313 68 HOH HOH . E 3 HOH A 14 314 80 HOH HOH . E 3 HOH A 15 315 17 HOH HOH . E 3 HOH A 16 316 44 HOH HOH . E 3 HOH A 17 317 206 HOH HOH . E 3 HOH A 18 318 221 HOH HOH . E 3 HOH A 19 319 71 HOH HOH . E 3 HOH A 20 320 5 HOH HOH . E 3 HOH A 21 321 170 HOH HOH . E 3 HOH A 22 322 8 HOH HOH . E 3 HOH A 23 323 160 HOH HOH . E 3 HOH A 24 324 211 HOH HOH . E 3 HOH A 25 325 9 HOH HOH . E 3 HOH A 26 326 78 HOH HOH . E 3 HOH A 27 327 73 HOH HOH . E 3 HOH A 28 328 136 HOH HOH . E 3 HOH A 29 329 61 HOH HOH . E 3 HOH A 30 330 87 HOH HOH . E 3 HOH A 31 331 150 HOH HOH . E 3 HOH A 32 332 192 HOH HOH . E 3 HOH A 33 333 11 HOH HOH . E 3 HOH A 34 334 16 HOH HOH . E 3 HOH A 35 335 51 HOH HOH . E 3 HOH A 36 336 178 HOH HOH . E 3 HOH A 37 337 31 HOH HOH . E 3 HOH A 38 338 3 HOH HOH . E 3 HOH A 39 339 208 HOH HOH . E 3 HOH A 40 340 225 HOH HOH . E 3 HOH A 41 341 46 HOH HOH . E 3 HOH A 42 342 102 HOH HOH . E 3 HOH A 43 343 165 HOH HOH . E 3 HOH A 44 344 88 HOH HOH . E 3 HOH A 45 345 19 HOH HOH . E 3 HOH A 46 346 76 HOH HOH . E 3 HOH A 47 347 15 HOH HOH . E 3 HOH A 48 348 23 HOH HOH . E 3 HOH A 49 349 138 HOH HOH . E 3 HOH A 50 350 55 HOH HOH . E 3 HOH A 51 351 249 HOH HOH . E 3 HOH A 52 352 194 HOH HOH . E 3 HOH A 53 353 65 HOH HOH . E 3 HOH A 54 354 260 HOH HOH . E 3 HOH A 55 355 168 HOH HOH . E 3 HOH A 56 356 152 HOH HOH . E 3 HOH A 57 357 12 HOH HOH . E 3 HOH A 58 358 172 HOH HOH . E 3 HOH A 59 359 129 HOH HOH . E 3 HOH A 60 360 230 HOH HOH . E 3 HOH A 61 361 191 HOH HOH . E 3 HOH A 62 362 109 HOH HOH . E 3 HOH A 63 363 235 HOH HOH . E 3 HOH A 64 364 47 HOH HOH . E 3 HOH A 65 365 171 HOH HOH . E 3 HOH A 66 366 158 HOH HOH . E 3 HOH A 67 367 69 HOH HOH . E 3 HOH A 68 368 141 HOH HOH . E 3 HOH A 69 369 116 HOH HOH . E 3 HOH A 70 370 162 HOH HOH . E 3 HOH A 71 371 81 HOH HOH . E 3 HOH A 72 372 241 HOH HOH . E 3 HOH A 73 373 14 HOH HOH . E 3 HOH A 74 374 236 HOH HOH . E 3 HOH A 75 375 182 HOH HOH . E 3 HOH A 76 376 210 HOH HOH . E 3 HOH A 77 377 246 HOH HOH . E 3 HOH A 78 378 218 HOH HOH . E 3 HOH A 79 379 62 HOH HOH . E 3 HOH A 80 380 183 HOH HOH . E 3 HOH A 81 381 37 HOH HOH . E 3 HOH A 82 382 248 HOH HOH . E 3 HOH A 83 383 224 HOH HOH . E 3 HOH A 84 384 140 HOH HOH . E 3 HOH A 85 385 195 HOH HOH . E 3 HOH A 86 386 105 HOH HOH . E 3 HOH A 87 387 247 HOH HOH . E 3 HOH A 88 388 203 HOH HOH . E 3 HOH A 89 389 143 HOH HOH . E 3 HOH A 90 390 173 HOH HOH . E 3 HOH A 91 391 149 HOH HOH . E 3 HOH A 92 392 18 HOH HOH . E 3 HOH A 93 393 145 HOH HOH . E 3 HOH A 94 394 213 HOH HOH . E 3 HOH A 95 395 166 HOH HOH . E 3 HOH A 96 396 1 HOH HOH . E 3 HOH A 97 397 262 HOH HOH . E 3 HOH A 98 398 163 HOH HOH . E 3 HOH A 99 399 193 HOH HOH . E 3 HOH A 100 400 164 HOH HOH . E 3 HOH A 101 401 180 HOH HOH . E 3 HOH A 102 402 184 HOH HOH . E 3 HOH A 103 403 120 HOH HOH . E 3 HOH A 104 404 147 HOH HOH . E 3 HOH A 105 405 75 HOH HOH . E 3 HOH A 106 406 104 HOH HOH . E 3 HOH A 107 407 67 HOH HOH . E 3 HOH A 108 408 267 HOH HOH . E 3 HOH A 109 409 89 HOH HOH . E 3 HOH A 110 410 110 HOH HOH . E 3 HOH A 111 411 156 HOH HOH . E 3 HOH A 112 412 175 HOH HOH . E 3 HOH A 113 413 130 HOH HOH . E 3 HOH A 114 414 154 HOH HOH . E 3 HOH A 115 415 100 HOH HOH . E 3 HOH A 116 416 199 HOH HOH . E 3 HOH A 117 417 137 HOH HOH . E 3 HOH A 118 418 134 HOH HOH . E 3 HOH A 119 419 126 HOH HOH . E 3 HOH A 120 420 93 HOH HOH . E 3 HOH A 121 421 117 HOH HOH . E 3 HOH A 122 422 35 HOH HOH . E 3 HOH A 123 423 114 HOH HOH . E 3 HOH A 124 424 231 HOH HOH . E 3 HOH A 125 425 245 HOH HOH . E 3 HOH A 126 426 92 HOH HOH . E 3 HOH A 127 427 251 HOH HOH . E 3 HOH A 128 428 196 HOH HOH . E 3 HOH A 129 429 220 HOH HOH . E 3 HOH A 130 430 146 HOH HOH . E 3 HOH A 131 431 94 HOH HOH . E 3 HOH A 132 432 198 HOH HOH . E 3 HOH A 133 433 252 HOH HOH . F 3 HOH B 1 301 214 HOH HOH . F 3 HOH B 2 302 201 HOH HOH . F 3 HOH B 3 303 212 HOH HOH . F 3 HOH B 4 304 72 HOH HOH . F 3 HOH B 5 305 48 HOH HOH . F 3 HOH B 6 306 53 HOH HOH . F 3 HOH B 7 307 58 HOH HOH . F 3 HOH B 8 308 27 HOH HOH . F 3 HOH B 9 309 34 HOH HOH . F 3 HOH B 10 310 232 HOH HOH . F 3 HOH B 11 311 60 HOH HOH . F 3 HOH B 12 312 176 HOH HOH . F 3 HOH B 13 313 98 HOH HOH . F 3 HOH B 14 314 39 HOH HOH . F 3 HOH B 15 315 79 HOH HOH . F 3 HOH B 16 316 41 HOH HOH . F 3 HOH B 17 317 59 HOH HOH . F 3 HOH B 18 318 10 HOH HOH . F 3 HOH B 19 319 250 HOH HOH . F 3 HOH B 20 320 91 HOH HOH . F 3 HOH B 21 321 97 HOH HOH . F 3 HOH B 22 322 85 HOH HOH . F 3 HOH B 23 323 33 HOH HOH . F 3 HOH B 24 324 43 HOH HOH . F 3 HOH B 25 325 13 HOH HOH . F 3 HOH B 26 326 244 HOH HOH . F 3 HOH B 27 327 103 HOH HOH . F 3 HOH B 28 328 209 HOH HOH . F 3 HOH B 29 329 95 HOH HOH . F 3 HOH B 30 330 74 HOH HOH . F 3 HOH B 31 331 151 HOH HOH . F 3 HOH B 32 332 36 HOH HOH . F 3 HOH B 33 333 45 HOH HOH . F 3 HOH B 34 334 49 HOH HOH . F 3 HOH B 35 335 177 HOH HOH . F 3 HOH B 36 336 29 HOH HOH . F 3 HOH B 37 337 205 HOH HOH . F 3 HOH B 38 338 21 HOH HOH . F 3 HOH B 39 339 22 HOH HOH . F 3 HOH B 40 340 215 HOH HOH . F 3 HOH B 41 341 6 HOH HOH . F 3 HOH B 42 342 200 HOH HOH . F 3 HOH B 43 343 186 HOH HOH . F 3 HOH B 44 344 66 HOH HOH . F 3 HOH B 45 345 40 HOH HOH . F 3 HOH B 46 346 216 HOH HOH . F 3 HOH B 47 347 70 HOH HOH . F 3 HOH B 48 348 24 HOH HOH . F 3 HOH B 49 349 101 HOH HOH . F 3 HOH B 50 350 52 HOH HOH . F 3 HOH B 51 351 50 HOH HOH . F 3 HOH B 52 352 263 HOH HOH . F 3 HOH B 53 353 64 HOH HOH . F 3 HOH B 54 354 4 HOH HOH . F 3 HOH B 55 355 42 HOH HOH . F 3 HOH B 56 356 108 HOH HOH . F 3 HOH B 57 357 207 HOH HOH . F 3 HOH B 58 358 83 HOH HOH . F 3 HOH B 59 359 30 HOH HOH . F 3 HOH B 60 360 237 HOH HOH . F 3 HOH B 61 361 217 HOH HOH . F 3 HOH B 62 362 153 HOH HOH . F 3 HOH B 63 363 26 HOH HOH . F 3 HOH B 64 364 190 HOH HOH . F 3 HOH B 65 365 155 HOH HOH . F 3 HOH B 66 366 127 HOH HOH . F 3 HOH B 67 367 82 HOH HOH . F 3 HOH B 68 368 63 HOH HOH . F 3 HOH B 69 369 115 HOH HOH . F 3 HOH B 70 370 144 HOH HOH . F 3 HOH B 71 371 202 HOH HOH . F 3 HOH B 72 372 197 HOH HOH . F 3 HOH B 73 373 265 HOH HOH . F 3 HOH B 74 374 239 HOH HOH . F 3 HOH B 75 375 32 HOH HOH . F 3 HOH B 76 376 261 HOH HOH . F 3 HOH B 77 377 238 HOH HOH . F 3 HOH B 78 378 38 HOH HOH . F 3 HOH B 79 379 161 HOH HOH . F 3 HOH B 80 380 227 HOH HOH . F 3 HOH B 81 381 131 HOH HOH . F 3 HOH B 82 382 2 HOH HOH . F 3 HOH B 83 383 233 HOH HOH . F 3 HOH B 84 384 125 HOH HOH . F 3 HOH B 85 385 169 HOH HOH . F 3 HOH B 86 386 135 HOH HOH . F 3 HOH B 87 387 264 HOH HOH . F 3 HOH B 88 388 229 HOH HOH . F 3 HOH B 89 389 174 HOH HOH . F 3 HOH B 90 390 112 HOH HOH . F 3 HOH B 91 391 157 HOH HOH . F 3 HOH B 92 392 57 HOH HOH . F 3 HOH B 93 393 167 HOH HOH . F 3 HOH B 94 394 240 HOH HOH . F 3 HOH B 95 395 204 HOH HOH . F 3 HOH B 96 396 7 HOH HOH . F 3 HOH B 97 397 123 HOH HOH . F 3 HOH B 98 398 133 HOH HOH . F 3 HOH B 99 399 219 HOH HOH . F 3 HOH B 100 400 258 HOH HOH . F 3 HOH B 101 401 148 HOH HOH . F 3 HOH B 102 402 28 HOH HOH . F 3 HOH B 103 403 119 HOH HOH . F 3 HOH B 104 404 257 HOH HOH . F 3 HOH B 105 405 113 HOH HOH . F 3 HOH B 106 406 222 HOH HOH . F 3 HOH B 107 407 223 HOH HOH . F 3 HOH B 108 408 187 HOH HOH . F 3 HOH B 109 409 99 HOH HOH . F 3 HOH B 110 410 124 HOH HOH . F 3 HOH B 111 411 243 HOH HOH . F 3 HOH B 112 412 226 HOH HOH . F 3 HOH B 113 413 118 HOH HOH . F 3 HOH B 114 414 253 HOH HOH . F 3 HOH B 115 415 255 HOH HOH . F 3 HOH B 116 416 256 HOH HOH . F 3 HOH B 117 417 159 HOH HOH . F 3 HOH B 118 418 242 HOH HOH . F 3 HOH B 119 419 128 HOH HOH . F 3 HOH B 120 420 228 HOH HOH . F 3 HOH B 121 421 77 HOH HOH . F 3 HOH B 122 422 122 HOH HOH . F 3 HOH B 123 423 259 HOH HOH . F 3 HOH B 124 424 179 HOH HOH . F 3 HOH B 125 425 254 HOH HOH . F 3 HOH B 126 426 185 HOH HOH . F 3 HOH B 127 427 189 HOH HOH . F 3 HOH B 128 428 121 HOH HOH . F 3 HOH B 129 429 132 HOH HOH . F 3 HOH B 130 430 188 HOH HOH . F 3 HOH B 131 431 106 HOH HOH . F 3 HOH B 132 432 86 HOH HOH . F 3 HOH B 133 433 139 HOH HOH . F 3 HOH B 134 434 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . C 2 -33.433 12.374 -5.487 1 76.77 ? C1 MAN 201 A 1 HETATM 2 C C2 MAN . . . C 2 -34.771 12.046 -4.726 1 71.36 ? C2 MAN 201 A 1 HETATM 3 C C3 MAN . . . C 2 -34.759 12.654 -3.296 1 61.86 ? C3 MAN 201 A 1 HETATM 4 C C4 MAN . . . C 2 -33.425 12.363 -2.573 1 45.01 ? C4 MAN 201 A 1 HETATM 5 C C5 MAN . . . C 2 -32.233 12.87 -3.411 1 43.96 ? C5 MAN 201 A 1 HETATM 6 C C6 MAN . . . C 2 -30.925 12.543 -2.751 1 34.14 ? C6 MAN 201 A 1 HETATM 7 O O1 MAN . . . C 2 -33.583 13.684 -6.016 1 75.59 ? O1 MAN 201 A 1 HETATM 8 O O2 MAN . . . C 2 -34.991 10.623 -4.587 1 61.39 ? O2 MAN 201 A 1 HETATM 9 O O3 MAN . . . C 2 -35.891 12.238 -2.483 1 65.04 ? O3 MAN 201 A 1 HETATM 10 O O4 MAN . . . C 2 -33.414 13.008 -1.315 1 42.4 ? O4 MAN 201 A 1 HETATM 11 O O5 MAN . . . C 2 -32.234 12.22 -4.715 1 44.54 ? O5 MAN 201 A 1 HETATM 12 O O6 MAN . . . C 2 -30.78 11.121 -2.726 1 31.64 ? O6 MAN 201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #