data_7RKH
#
_model_server_result.job_id            o8SciKu_Isb9drvn6Ux08g 
_model_server_result.datetime_utc      '2025-07-07 17:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    7RKH 
#
_exptl.entry_id    7RKH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RKH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 O N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 70 D ASP 70 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc2 A OD2 ASP 70 D ASP 70 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc3 E O2B UTP . D UTP 601 1_555 Q MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc4 F O3G ATP . D ATP 602 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? 
metalc ? metalc5 F O1B ATP . D ATP 602 1_555 G MG MG . D MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc6 H MG MG . D MG 604 1_555 R O1B UTP . C UTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc7 B OD1 ASP 70 A ASP 70 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc8 B OD2 ASP 70 A ASP 70 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc9 I O1B UTP . A UTP 601 1_555 M MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? 
metalc ? metalc10 J O3G ATP . A ATP 602 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? 
metalc ? metalc11 J O1B ATP . A ATP 602 1_555 K MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc12 L MG MG . A MG 604 1_555 N O2B UTP . B UTP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
metalc ? metalc13 C OD1 ASP 70 B ASP 70 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc14 C OD2 ASP 70 B ASP 70 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc15 O O3G ATP . B ATP 603 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? 
metalc ? metalc16 O O1B ATP . B ATP 603 1_555 P MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc17 D OD1 ASP 70 C ASP 70 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc18 D OD2 ASP 70 C ASP 70 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc19 S O3G ATP . C ATP 603 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? 
metalc ? metalc20 S O1B ATP . C ATP 603 1_555 T MG MG . C MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7RKH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 UTP D 1 601 602 UTP UTP . 
F 3 ATP D 1 602 601 ATP ATP . 
G 4 MG D 1 603 603 MG MG . 
H 4 MG D 1 604 604 MG MG . 
I 2 UTP A 1 601 602 UTP UTP . 
J 3 ATP A 1 602 601 ATP ATP . 
K 4 MG A 1 603 603 MG MG . 
L 4 MG A 1 604 604 MG MG . 
M 4 MG B 1 601 604 MG MG . 
N 2 UTP B 1 602 602 UTP UTP . 
O 3 ATP B 1 603 601 ATP ATP . 
P 4 MG B 1 604 603 MG MG . 
Q 4 MG C 1 601 604 MG MG . 
R 2 UTP C 1 602 602 UTP UTP . 
S 3 ATP C 1 603 601 ATP ATP . 
T 4 MG C 1 604 603 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 3 147.437 172.576 152.958 1 43.49 ? PG ATP 602 D 1 
HETATM 2 O O1G ATP . . . F 3 148.169 171.319 152.976 1 43.49 ? O1G ATP 602 D 1 
HETATM 3 O O2G ATP . . . F 3 145.978 172.364 153.028 1 43.49 ? O2G ATP 602 D 1 
HETATM 4 O O3G ATP . . . F 3 147.817 173.422 151.82 1 43.49 ? O3G ATP 602 D 1 
HETATM 5 P PB ATP . . . F 3 147.572 174.478 155.392 1 43.49 ? PB ATP 602 D 1 
HETATM 6 O O1B ATP . . . F 3 147.89 175.64 154.798 1 43.49 ? O1B ATP 602 D 1 
HETATM 7 O O2B ATP . . . F 3 148.13 174.232 156.67 1 43.49 ? O2B ATP 602 D 1 
HETATM 8 O O3B ATP . . . F 3 147.871 173.339 154.314 1 43.49 ? O3B ATP 602 D 1 
HETATM 9 P PA ATP . . . F 3 145.003 175.59 154.499 1 43.49 ? PA ATP 602 D 1 
HETATM 10 O O1A ATP . . . F 3 145.15 177.026 154.621 1 43.49 ? O1A ATP 602 D 1 
HETATM 11 O O2A ATP . . . F 3 145.023 175.117 153.108 1 43.49 ? O2A ATP 602 D 1 
HETATM 12 O O3A ATP . . . F 3 146.017 174.695 155.351 1 43.49 ? O3A ATP 602 D 1 
HETATM 13 O O5' ATP . . . F 3 143.712 175.132 155.304 1 43.49 ? O5' ATP 602 D 1 
HETATM 14 C C5' ATP . . . F 3 142.788 174.142 154.821 1 43.49 ? C5' ATP 602 D 1 
HETATM 15 C C4' ATP . . . F 3 141.51 174.844 154.464 1 43.49 ? C4' ATP 602 D 1 
HETATM 16 O O4' ATP . . . F 3 140.934 175.28 155.705 1 43.49 ? O4' ATP 602 D 1 
HETATM 17 C C3' ATP . . . F 3 141.619 176.142 153.662 1 43.49 ? C3' ATP 602 D 1 
HETATM 18 O O3' ATP . . . F 3 141.721 175.845 152.273 1 43.49 ? O3' ATP 602 D 1 
HETATM 19 C C2' ATP . . . F 3 140.373 176.911 154.11 1 43.49 ? C2' ATP 602 D 1 
HETATM 20 O O2' ATP . . . F 3 139.327 176.739 153.187 1 43.49 ? O2' ATP 602 D 1 
HETATM 21 C C1' ATP . . . F 3 140.082 176.369 155.515 1 43.49 ? C1' ATP 602 D 1 
HETATM 22 N N9 ATP . . . F 3 140.291 177.198 156.725 1 43.49 ? N9 ATP 602 D 1 
HETATM 23 C C8 ATP . . . F 3 141.445 177.639 157.244 1 43.49 ? C8 ATP 602 D 1 
HETATM 24 N N7 ATP . . . F 3 141.306 178.32 158.353 1 43.49 ? N7 ATP 602 D 1 
HETATM 25 C C5 ATP . . . F 3 139.959 178.267 158.605 1 43.49 ? C5 ATP 602 D 1 
HETATM 26 C C6 ATP . . . F 3 139.171 178.772 159.638 1 43.49 ? C6 ATP 602 D 1 
HETATM 27 N N6 ATP . . . F 3 139.636 179.449 160.67 1 43.49 ? N6 ATP 602 D 1 
HETATM 28 N N1 ATP . . . F 3 137.857 178.531 159.588 1 43.49 ? N1 ATP 602 D 1 
HETATM 29 C C2 ATP . . . F 3 137.367 177.848 158.554 1 43.49 ? C2 ATP 602 D 1 
HETATM 30 N N3 ATP . . . F 3 138.006 177.326 157.519 1 43.49 ? N3 ATP 602 D 1 
HETATM 31 C C4 ATP . . . F 3 139.322 177.571 157.612 1 43.49 ? C4 ATP 602 D 1 
HETATM 32 H "H5'1" ATP . . . F 3 142.614 173.472 155.528 1 43.49 ? "H5'1" ATP 602 D 1 
HETATM 33 H "H5'2" ATP . . . F 3 143.15 173.676 154.032 1 43.49 ? "H5'2" ATP 602 D 1 
HETATM 34 H H4' ATP . . . F 3 140.906 174.21 154.023 1 43.49 ? H4' ATP 602 D 1 
HETATM 35 H H3' ATP . . . F 3 142.402 176.673 153.925 1 43.49 ? H3' ATP 602 D 1 
HETATM 36 H HO3' ATP . . . F 3 142.543 175.802 152.063 1 43.49 ? HO3' ATP 602 D 1 
HETATM 37 H H2' ATP . . . F 3 140.556 177.848 154.146 1 43.49 ? H2' ATP 602 D 1 
HETATM 38 H HO2' ATP . . . F 3 139.438 177.281 152.543 1 43.49 ? HO2' ATP 602 D 1 
HETATM 39 H H1' ATP . . . F 3 139.156 176.043 155.52 1 43.49 ? H1' ATP 602 D 1 
HETATM 40 H H8 ATP . . . F 3 142.273 177.519 156.821 1 43.49 ? H8 ATP 602 D 1 
HETATM 41 H HN61 ATP . . . F 3 139.277 179.336 161.463 1 43.49 ? HN61 ATP 602 D 1 
HETATM 42 H HN62 ATP . . . F 3 140.3 180.008 160.556 1 43.49 ? HN62 ATP 602 D 1 
HETATM 43 H H2 ATP . . . F 3 136.434 177.711 158.566 1 43.49 ? H2 ATP 602 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#